Crystal structure of apo-glycine N-methyltransferase (GNMT).

Pattanayek R, Newcomer ME, Wagner C
Protein Sci. 1998 7 (6): 1326-31

PMID: 9655336 · PMCID: PMC2144038 · DOI:10.1002/pro.5560070608

The crystal structure of the recombinant apo-form of glycine N-methyltransferase (GNMT) has been determined at 2.5 A resolution. GNMT is a tetrameric enzyme (monomer Mr = 32,423Da, 292 amino acids) that catalyzes the transfer of a methyl group from S-adenosylmethionine (AdoMet) to glycine with the formation of S-adenosylhomocysteine (AdoHcy) and sarcosine (N-methylglycine). GNMT is a regulatory enzyme, which is inhibited by 5-methyltetrahydrofolate pentaglutamate and believed to control the ratio of AdoMet to AdoHcy in tissues. The crystals belong to the orthorhombic space group P2(1)2(1)2 (a = 85.39, b = 174.21, c = 44.71 A) and contain one dimer per asymmetric unit. The AdoMet-GNMT structure served as the starting model. The structure was refined to an R-factor of 21.9%. Each monomer is a three-domain structure with a large cavity enclosed by the three domains. The tetramer resembles a square with a central channel about which N-terminal domains are intertwined. Only localized changes of the residues involved in the binding pocket are observed for the apo-GNMT structure when compared to that determined in the presence of substrate and substrate analog.

MeSH Terms (13)

Animals Apoenzymes Crystallization Dimerization Glycine N-Methyltransferase Liver Macromolecular Substances Methyltransferases Models, Molecular Protein Conformation Protein Structure, Secondary Rats Recombinant Proteins

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