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Visualization of protein-nucleic acid interactions in a virus. Refined structure of intact tobacco mosaic virus at 2.9 A resolution by X-ray fiber diffraction.

Namba K, Pattanayek R, Stubbs G
J Mol Biol. 1989 208 (2): 307-25

PMID: 2769760 · DOI:10.1016/0022-2836(89)90391-4

The structure of tobacco mosaic virus (TMV) has been determined by fiber diffraction methods at 2.9 A resolution, and refined by restrained least-squares to an R-factor of 0.096. Protein-nucleic acid interactions are clearly visible. The final model contains all of the non-hydrogen atoms of the RNA and the protein, 71 water molecules, and two calcium-binding sites. Viral disassembly is driven by electrostatic repulsions between the charges in two carboxyl-carboxylate pairs and a phosphate-carboxylate pair. The phosphate-carboxylate pair and at least one of the carboxyl-carboxylate pairs appear to be calcium-binding sites. Nucleotide specificity, enabling TMV to recognize its own RNA by a repeating pattern of guanine residues, is provided by two guanine-specific hydrogen bonds in one of the three base-binding sites.

MeSH Terms (12)

Amino Acids Binding Sites Calcium Hydrogen Bonding Models, Molecular Models, Structural Molecular Conformation RNA, Viral Tobacco Mosaic Virus Viral Proteins Water X-Ray Diffraction

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