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The publication data currently available has been vetted by Vanderbilt faculty, staff, administrators and trainees. The data itself is retrieved directly from NCBI's PubMed and is automatically updated on a weekly basis to ensure accuracy and completeness.

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Results: 11 to 20 of 34

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De novo RNA sequence assembly during in vivo inflammatory stress reveals hundreds of unannotated lincRNAs in human blood CD14 monocytes and in adipose tissue.
Xue C, Zhang X, Zhang H, Ferguson JF, Wang Y, Hinkle CC, Li M, Reilly MP
(2017) Physiol Genomics 49: 287-305
MeSH Terms: Adipose Tissue, Adolescent, Adult, DNA Transposable Elements, Endotoxemia, Gene Expression Profiling, Genome-Wide Association Study, Humans, Inflammation, Lipopolysaccharide Receptors, Male, Middle Aged, Monocytes, Polymorphism, Single Nucleotide, RNA, Long Noncoding, Young Adult
Added June 6, 2017
0 Communities
1 Members
0 Resources
16 MeSH Terms
Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles.
Farshidfar F, Zheng S, Gingras MC, Newton Y, Shih J, Robertson AG, Hinoue T, Hoadley KA, Gibb EA, Roszik J, Covington KR, Wu CC, Shinbrot E, Stransky N, Hegde A, Yang JD, Reznik E, Sadeghi S, Pedamallu CS, Ojesina AI, Hess JM, Auman JT, Rhie SK, Bowlby R, Borad MJ, Cancer Genome Atlas Network, Zhu AX, Stuart JM, Sander C, Akbani R, Cherniack AD, Deshpande V, Mounajjed T, Foo WC, Torbenson MS, Kleiner DE, Laird PW, Wheeler DA, McRee AJ, Bathe OF, Andersen JB, Bardeesy N, Roberts LR, Kwong LN
(2017) Cell Rep 18: 2780-2794
MeSH Terms: Adult, Aged, Aged, 80 and over, Bile Duct Neoplasms, Cholangiocarcinoma, Chromatin, DNA Methylation, DNA-Binding Proteins, Female, Gene Expression Regulation, Neoplastic, Genomics, Humans, Isocitrate Dehydrogenase, Liver, Liver Neoplasms, Male, Middle Aged, Mitochondria, Mutation, Nuclear Proteins, Pancreatic Neoplasms, Promoter Regions, Genetic, RNA, Long Noncoding, RNA, Messenger, Transcription Factors
Added October 30, 2019
0 Communities
1 Members
0 Resources
25 MeSH Terms
Untangling ccRCC prognosis with SLINKY.
Reinfeld BI, Rathmell WK
(2017) Oncotarget 8: 18620-18621
MeSH Terms: Biomarkers, Tumor, Carcinoma, Renal Cell, Humans, Kidney Neoplasms, Prognosis, RNA, Long Noncoding
Added October 30, 2019
0 Communities
1 Members
0 Resources
MeSH Terms
Integrated genomic and molecular characterization of cervical cancer.
Cancer Genome Atlas Research Network, Albert Einstein College of Medicine, Analytical Biological Services, Barretos Cancer Hospital, Baylor College of Medicine, Beckman Research Institute of City of Hope, Buck Institute for Research on Aging, Canada's Michael Smith Genome Sciences Centre, Harvard Medical School, Helen F. Graham Cancer Center &Research Institute at Christiana Care Health Services, HudsonAlpha Institute for Biotechnology, ILSbio, LLC, Indiana University School of Medicine, Institute of Human Virology, Institute for Systems Biology, International Genomics Consortium, Leidos Biomedical, Massachusetts General Hospital, McDonnell Genome Institute at Washington University, Medical College of Wisconsin, Medical University of South Carolina, Memorial Sloan Kettering Cancer Center, Montefiore Medical Center, NantOmics, National Cancer Institute, National Hospital, Abuja, Nigeria, National Human Genome Research Institute, National Institute of Environmental Health Sciences, National Institute on Deafness &Other Communication Disorders, Ontario Tumour Bank, London Health Sciences Centre, Ontario Tumour Bank, Ontario Institute for Cancer Research, Ontario Tumour Bank, The Ottawa Hospital, Oregon Health &Science University, Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, SRA International, St Joseph's Candler Health System, Eli &Edythe L. Broad Institute of Massachusetts Institute of Technology &Harvard University, Research Institute at Nationwide Children's Hospital, Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins University, University of Bergen, University of Texas MD Anderson Cancer Center, University of Abuja Teaching Hospital, University of Alabama at Birmingham, University of California, Irvine, University of California Santa Cruz, University of Kansas Medical Center, University of Lausanne, University of New Mexico Health Sciences Center, University of North Carolina at Chapel Hill, University of Oklahoma Health Sciences Center, University of Pittsburgh, University of São Paulo, Ribeir ão Preto Medical School, University of Southern California, University of Washington, University of Wisconsin School of Medicine &Public Health, Van Andel Research Institute, Washington University in St Louis
(2017) Nature 543: 378-384
MeSH Terms: APOBEC-1 Deaminase, Adenocarcinoma, B7-H1 Antigen, Carcinoma, Squamous Cell, Caspase 8, DNA-Binding Proteins, Female, Genomics, HLA-A Antigens, Human papillomavirus 16, Humans, Keratins, Mitogen-Activated Protein Kinase Kinases, Molecular Targeted Therapy, Mutation, Nuclear Proteins, PTEN Phosphohydrolase, Phosphatidylinositol 3-Kinases, Programmed Cell Death 1 Ligand 2 Protein, Protein-Serine-Threonine Kinases, Proteomics, Proto-Oncogene Proteins p21(ras), RNA, Long Noncoding, Receptor, ErbB-3, Receptor, Transforming Growth Factor-beta Type II, Receptors, Transforming Growth Factor beta, Signal Transduction, Transcription Factors, Uterine Cervical Neoplasms, Virus Integration
Added October 30, 2019
0 Communities
1 Members
0 Resources
30 MeSH Terms
Long intergenic non-coding RNA expression signature in human breast cancer.
Zhang Y, Wagner EK, Guo X, May I, Cai Q, Zheng W, He C, Long J
(2016) Sci Rep 6: 37821
MeSH Terms: Adult, Aged, Breast Neoplasms, Case-Control Studies, Female, Gene Expression Profiling, Gene Expression Regulation, Neoplastic, Humans, MCF-7 Cells, Middle Aged, Protein Interaction Maps, RNA, Long Noncoding, Sequence Analysis, RNA, Survival Analysis, Transcription Factors
Added April 3, 2018
0 Communities
2 Members
0 Resources
15 MeSH Terms
lncRNA expression in the auditory forebrain during postnatal development.
Guo Y, Zhang P, Sheng Q, Zhao S, Hackett TA
(2016) Gene 593: 201-216
MeSH Terms: Animals, Auditory Cortex, Female, Gene Expression Regulation, Male, Mice, RNA, Long Noncoding
Added April 6, 2017
0 Communities
1 Members
0 Resources
7 MeSH Terms
The functional characterization of long noncoding RNA SPRY4-IT1 in human melanoma cells.
Mazar J, Zhao W, Khalil AM, Lee B, Shelley J, Govindarajan SS, Yamamoto F, Ratnam M, Aftab MN, Collins S, Finck BN, Han X, Mattick JS, Dinger ME, Perera RJ
(2014) Oncotarget 5: 8959-69
MeSH Terms: Apoptosis, Carnitine, Cell Line, Tumor, Cell Proliferation, Diacylglycerol O-Acyltransferase, Humans, Intracellular Signaling Peptides and Proteins, Lipid Metabolism, Melanoma, Neoplasm Invasiveness, Nerve Tissue Proteins, Nuclear Proteins, RNA Interference, RNA, Long Noncoding, RNA, Small Interfering, Triglycerides
Added July 22, 2020
0 Communities
1 Members
0 Resources
MeSH Terms
Genetic variation in the HLA region is associated with susceptibility to herpes zoster.
Crosslin DR, Carrell DS, Burt A, Kim DS, Underwood JG, Hanna DS, Comstock BA, Baldwin E, de Andrade M, Kullo IJ, Tromp G, Kuivaniemi H, Borthwick KM, McCarty CA, Peissig PL, Doheny KF, Pugh E, Kho A, Pacheco J, Hayes MG, Ritchie MD, Verma SS, Armstrong G, Stallings S, Denny JC, Carroll RJ, Crawford DC, Crane PK, Mukherjee S, Bottinger E, Li R, Keating B, Mirel DB, Carlson CS, Harley JB, Larson EB, Jarvik GP
(2015) Genes Immun 16: 1-7
MeSH Terms: Age of Onset, Aged, Algorithms, Cohort Studies, Electronic Health Records, Female, Genetic Predisposition to Disease, Genome-Wide Association Study, Herpes Zoster, Herpesvirus 3, Human, Humans, Male, Middle Aged, RNA, Long Noncoding, RNA, Untranslated, Retrospective Studies, United States
Added March 14, 2018
0 Communities
1 Members
0 Resources
17 MeSH Terms
Regulation of the Th1 genomic locus from Ifng through Tmevpg1 by T-bet.
Collier SP, Henderson MA, Tossberg JT, Aune TM
(2014) J Immunol 193: 3959-65
MeSH Terms: Animals, Cell Lineage, Enhancer Elements, Genetic, Epigenesis, Genetic, Genetic Loci, Interferon-gamma, Mice, Mice, Inbred BALB C, Proto-Oncogene Protein c-ets-1, RNA, Long Noncoding, Regulatory Sequences, Nucleic Acid, T-Box Domain Proteins, Th1 Cells, Transcription Factor RelA
Added December 8, 2014
1 Communities
2 Members
0 Resources
14 MeSH Terms
Methotrexate inhibits NF-κB activity via long intergenic (noncoding) RNA-p21 induction.
Spurlock CF, Tossberg JT, Matlock BK, Olsen NJ, Aune TM
(2014) Arthritis Rheumatol 66: 2947-57
MeSH Terms: Adult, Antirheumatic Agents, Arthritis, Rheumatoid, Cell Line, Cells, Cultured, Cyclin-Dependent Kinase Inhibitor p21, DNA-Activated Protein Kinase, Dose-Response Relationship, Drug, Female, Humans, Male, Methotrexate, Middle Aged, Monocytes, NF-kappa B, Nuclear Proteins, RNA, Long Noncoding, T-Lymphocytes, Tumor Suppressor Protein p53, eIF-2 Kinase
Added January 21, 2015
0 Communities
1 Members
0 Resources
20 MeSH Terms