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The publication data currently available has been vetted by Vanderbilt faculty, staff, administrators and trainees. The data itself is retrieved directly from NCBI's PubMed and is automatically updated on a weekly basis to ensure accuracy and completeness.

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Results: 1 to 10 of 13

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Integrated genomic and molecular characterization of cervical cancer.
Cancer Genome Atlas Research Network, Albert Einstein College of Medicine, Analytical Biological Services, Barretos Cancer Hospital, Baylor College of Medicine, Beckman Research Institute of City of Hope, Buck Institute for Research on Aging, Canada's Michael Smith Genome Sciences Centre, Harvard Medical School, Helen F. Graham Cancer Center &Research Institute at Christiana Care Health Services, HudsonAlpha Institute for Biotechnology, ILSbio, LLC, Indiana University School of Medicine, Institute of Human Virology, Institute for Systems Biology, International Genomics Consortium, Leidos Biomedical, Massachusetts General Hospital, McDonnell Genome Institute at Washington University, Medical College of Wisconsin, Medical University of South Carolina, Memorial Sloan Kettering Cancer Center, Montefiore Medical Center, NantOmics, National Cancer Institute, National Hospital, Abuja, Nigeria, National Human Genome Research Institute, National Institute of Environmental Health Sciences, National Institute on Deafness &Other Communication Disorders, Ontario Tumour Bank, London Health Sciences Centre, Ontario Tumour Bank, Ontario Institute for Cancer Research, Ontario Tumour Bank, The Ottawa Hospital, Oregon Health &Science University, Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, SRA International, St Joseph's Candler Health System, Eli &Edythe L. Broad Institute of Massachusetts Institute of Technology &Harvard University, Research Institute at Nationwide Children's Hospital, Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins University, University of Bergen, University of Texas MD Anderson Cancer Center, University of Abuja Teaching Hospital, University of Alabama at Birmingham, University of California, Irvine, University of California Santa Cruz, University of Kansas Medical Center, University of Lausanne, University of New Mexico Health Sciences Center, University of North Carolina at Chapel Hill, University of Oklahoma Health Sciences Center, University of Pittsburgh, University of São Paulo, Ribeir ão Preto Medical School, University of Southern California, University of Washington, University of Wisconsin School of Medicine &Public Health, Van Andel Research Institute, Washington University in St Louis
(2017) Nature 543: 378-384
MeSH Terms: APOBEC-1 Deaminase, Adenocarcinoma, B7-H1 Antigen, Carcinoma, Squamous Cell, Caspase 8, DNA-Binding Proteins, Female, Genomics, HLA-A Antigens, Human papillomavirus 16, Humans, Keratins, Mitogen-Activated Protein Kinase Kinases, Molecular Targeted Therapy, Mutation, Nuclear Proteins, PTEN Phosphohydrolase, Phosphatidylinositol 3-Kinases, Programmed Cell Death 1 Ligand 2 Protein, Protein-Serine-Threonine Kinases, Proteomics, Proto-Oncogene Proteins p21(ras), RNA, Long Noncoding, Receptor, ErbB-3, Receptor, Transforming Growth Factor-beta Type II, Receptors, Transforming Growth Factor beta, Signal Transduction, Transcription Factors, Uterine Cervical Neoplasms, Virus Integration
Added October 30, 2019
0 Communities
1 Members
0 Resources
30 MeSH Terms
Identification of HPV integration and gene mutation in HeLa cell line by integrated analysis of RNA-Seq and MS/MS data.
Sun H, Chen C, Lian B, Zhang M, Wang X, Zhang B, Li Y, Yang P, Xie L
(2015) J Proteome Res 14: 1678-86
MeSH Terms: Genetic Variation, HeLa Cells, Humans, Molecular Sequence Annotation, Mutation, Papillomaviridae, Proteomics, Sequence Analysis, RNA, Tandem Mass Spectrometry, Virus Integration
Added February 15, 2016
0 Communities
1 Members
0 Resources
10 MeSH Terms
Characterization of HPV and host genome interactions in primary head and neck cancers.
Parfenov M, Pedamallu CS, Gehlenborg N, Freeman SS, Danilova L, Bristow CA, Lee S, Hadjipanayis AG, Ivanova EV, Wilkerson MD, Protopopov A, Yang L, Seth S, Song X, Tang J, Ren X, Zhang J, Pantazi A, Santoso N, Xu AW, Mahadeshwar H, Wheeler DA, Haddad RI, Jung J, Ojesina AI, Issaeva N, Yarbrough WG, Hayes DN, Grandis JR, El-Naggar AK, Meyerson M, Park PJ, Chin L, Seidman JG, Hammerman PS, Kucherlapati R, Cancer Genome Atlas Network
(2014) Proc Natl Acad Sci U S A 111: 15544-9
MeSH Terms: Base Sequence, DNA Methylation, Gene Expression Regulation, Neoplastic, Genes, Neoplasm, Genome, Human, Head and Neck Neoplasms, Host-Pathogen Interactions, Humans, Molecular Sequence Data, Papillomaviridae, Virus Integration
Added August 8, 2016
0 Communities
1 Members
0 Resources
11 MeSH Terms
HIV-1 uncoating: connection to nuclear entry and regulation by host proteins.
Ambrose Z, Aiken C
(2014) Virology 454-455: 371-9
MeSH Terms: Active Transport, Cell Nucleus, HIV-1, Host-Pathogen Interactions, Reverse Transcription, Virus Integration, Virus Uncoating
Added May 27, 2014
0 Communities
1 Members
0 Resources
6 MeSH Terms
INI1/hSNF5-interaction defective HIV-1 IN mutants exhibit impaired particle morphology, reverse transcription and integration in vivo.
Mathew S, Nguyen M, Wu X, Pal A, Shah VB, Prasad VR, Aiken C, Kalpana GV
(2013) Retrovirology 10: 66
MeSH Terms: Cell Line, Chromosomal Proteins, Non-Histone, DNA-Binding Proteins, HIV Integrase, HIV-1, Host-Pathogen Interactions, Humans, Microscopy, Electron, Transmission, Reverse Transcription, SMARCB1 Protein, Transcription Factors, Virion, Virus Assembly, Virus Integration
Added May 27, 2014
0 Communities
1 Members
0 Resources
14 MeSH Terms
VirusFinder: software for efficient and accurate detection of viruses and their integration sites in host genomes through next generation sequencing data.
Wang Q, Jia P, Zhao Z
(2013) PLoS One 8: e64465
MeSH Terms: Computational Biology, Genome, Genomics, High-Throughput Nucleotide Sequencing, Humans, Software, Virus Integration, Viruses
Added March 7, 2014
0 Communities
1 Members
0 Resources
8 MeSH Terms
PiggyBac transposon-based inducible gene expression in vivo after somatic cell gene transfer.
Saridey SK, Liu L, Doherty JE, Kaja A, Galvan DL, Fletcher BS, Wilson MH
(2009) Mol Ther 17: 2115-20
MeSH Terms: Animals, Blotting, Southern, Cells, Cultured, DNA Transposable Elements, Female, Gene Transfer Techniques, Genetic Vectors, Green Fluorescent Proteins, Humans, Kidney, Liver, Lung, Mice, Mice, Inbred C57BL, Mice, SCID, Transgenes, Virus Integration
Added August 22, 2013
0 Communities
1 Members
0 Resources
17 MeSH Terms
Murine leukemias with retroviral insertions at Lmo2 are predictive of the leukemias induced in SCID-X1 patients following retroviral gene therapy.
Davé UP, Akagi K, Tripathi R, Cleveland SM, Thompson MA, Yi M, Stephens R, Downing JR, Jenkins NA, Copeland NG
(2009) PLoS Genet 5: e1000491
MeSH Terms: Adaptor Proteins, Signal Transducing, Animals, Base Sequence, DNA, Neoplasm, DNA-Binding Proteins, Genetic Therapy, Hematopoietic Stem Cell Transplantation, Humans, Interleukin Receptor Common gamma Subunit, LIM Domain Proteins, Leukemia, Experimental, Leukemia-Lymphoma, Adult T-Cell, Metalloproteins, Mice, Mice, SCID, Models, Genetic, Molecular Sequence Data, Mutagenesis, Insertional, Proto-Oncogene Proteins, Retroviridae, Transplantation, Autologous, Virus Integration, X-Linked Combined Immunodeficiency Diseases
Added March 5, 2014
0 Communities
2 Members
0 Resources
23 MeSH Terms
Evidence for a functional link between uncoating of the human immunodeficiency virus type 1 core and nuclear import of the viral preintegration complex.
Dismuke DJ, Aiken C
(2006) J Virol 80: 3712-20
MeSH Terms: Active Transport, Cell Nucleus, Cell Line, DNA, Viral, HIV Long Terminal Repeat, HIV-1, Humans, Transcription, Genetic, Viral Core Proteins, Viral Regulatory and Accessory Proteins, Virus Integration
Added February 19, 2015
0 Communities
1 Members
0 Resources
10 MeSH Terms
Gene therapy insertional mutagenesis insights.
Davé UP, Jenkins NA, Copeland NG
(2004) Science 303: 333
MeSH Terms: Adaptor Proteins, Signal Transducing, Animals, DNA-Binding Proteins, Gene Expression, Genetic Therapy, Genetic Vectors, Humans, LIM Domain Proteins, Leukemia, T-Cell, Metalloproteins, Mice, Mutagenesis, Insertional, Proto-Oncogene Proteins, Receptors, Interleukin-2, Retroviridae, Severe Combined Immunodeficiency, Virus Integration
Added March 5, 2014
0 Communities
1 Members
0 Resources
17 MeSH Terms