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The publication data currently available has been vetted by Vanderbilt faculty, staff, administrators and trainees. The data itself is retrieved directly from NCBI's PubMed and is automatically updated on a weekly basis to ensure accuracy and completeness.

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Results: 1 to 10 of 17

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Isotopically nonstationary C flux analysis of cyanobacterial isobutyraldehyde production.
Jazmin LJ, Xu Y, Cheah YE, Adebiyi AO, Johnson CH, Young JD
(2017) Metab Eng 42: 9-18
MeSH Terms: Aldehydes, Bacterial Proteins, Carbon Isotopes, Malate Dehydrogenase, Phosphoenolpyruvate Carboxylase, Pyruvate Kinase, Staining and Labeling, Synechococcus
Added September 11, 2017
0 Communities
1 Members
0 Resources
8 MeSH Terms
An arginine tetrad as mediator of input-dependent and input-independent ATPases in the clock protein KaiC.
Pattanayek R, Xu Y, Lamichhane A, Johnson CH, Egli M
(2014) Acta Crystallogr D Biol Crystallogr 70: 1375-90
MeSH Terms: Adenosine Triphosphatases, Arginine, Bacterial Proteins, Binding Sites, Circadian Rhythm Signaling Peptides and Proteins, Crystallography, X-Ray, Models, Molecular, Mutagenesis, Site-Directed, Phosphorylation, Protein Structure, Tertiary, Synechococcus
Added May 27, 2014
0 Communities
2 Members
0 Resources
11 MeSH Terms
Circadian yin-yang regulation and its manipulation to globally reprogram gene expression.
Xu Y, Weyman PD, Umetani M, Xiong J, Qin X, Xu Q, Iwasaki H, Johnson CH
(2013) Curr Biol 23: 2365-74
MeSH Terms: Bacterial Proteins, CLOCK Proteins, Circadian Rhythm, Circadian Rhythm Signaling Peptides and Proteins, Gene Expression, Gene Expression Profiling, Gene Expression Regulation, Bacterial, Hydrogen, Hydrogenase, Multigene Family, Phosphorylation, Promoter Regions, Genetic, Synechococcus, Transcription, Genetic
Added February 12, 2015
0 Communities
1 Members
0 Resources
14 MeSH Terms
CryoEM and molecular dynamics of the circadian KaiB-KaiC complex indicates that KaiB monomers interact with KaiC and block ATP binding clefts.
Villarreal SA, Pattanayek R, Williams DR, Mori T, Qin X, Johnson CH, Egli M, Stewart PL
(2013) J Mol Biol 425: 3311-24
MeSH Terms: Adenosine Triphosphate, Bacterial Proteins, Binding Sites, Circadian Rhythm Signaling Peptides and Proteins, Cryoelectron Microscopy, Crystallography, X-Ray, Models, Molecular, Molecular Dynamics Simulation, Multiprotein Complexes, Phosphorylation, Protein Binding, Protein Multimerization, Protein Structure, Quaternary, Synechococcus
Added March 7, 2014
0 Communities
1 Members
0 Resources
14 MeSH Terms
Non-optimal codon usage is a mechanism to achieve circadian clock conditionality.
Xu Y, Ma P, Shah P, Rokas A, Liu Y, Johnson CH
(2013) Nature 495: 116-20
MeSH Terms: Bacterial Proteins, Circadian Clocks, Circadian Rhythm, Circadian Rhythm Signaling Peptides and Proteins, Codon, Gene Expression Regulation, Bacterial, Genes, Bacterial, Multigene Family, Phenotype, Selection, Genetic, Synechococcus, Temperature
Added May 30, 2014
0 Communities
2 Members
0 Resources
12 MeSH Terms
Nature of KaiB-KaiC binding in the cyanobacterial circadian oscillator.
Pattanayek R, Yadagiri KK, Ohi MD, Egli M
(2013) Cell Cycle 12: 810-7
MeSH Terms: Bacterial Proteins, Circadian Clocks, Circadian Rhythm Signaling Peptides and Proteins, Histidine, Models, Molecular, Nanostructures, Negative Staining, Oligopeptides, Protein Binding, Scattering, Small Angle, Static Electricity, Synechococcus, X-Ray Diffraction
Added March 7, 2014
0 Communities
3 Members
0 Resources
13 MeSH Terms
Loop-loop interactions regulate KaiA-stimulated KaiC phosphorylation in the cyanobacterial KaiABC circadian clock.
Egli M, Pattanayek R, Sheehan JH, Xu Y, Mori T, Smith JA, Johnson CH
(2013) Biochemistry 52: 1208-20
MeSH Terms: Bacterial Proteins, Circadian Clocks, Circadian Rhythm Signaling Peptides and Proteins, Crystallography, X-Ray, Models, Molecular, Molecular Dynamics Simulation, Mutation, Phosphorylation, Protein Conformation, Protein Multimerization, Synechococcus, Thermodynamics, Valine
Added May 30, 2013
0 Communities
3 Members
0 Resources
13 MeSH Terms
Combined SAXS/EM based models of the S. elongatus post-translational circadian oscillator and its interactions with the output His-kinase SasA.
Pattanayek R, Williams DR, Rossi G, Weigand S, Mori T, Johnson CH, Stewart PL, Egli M
(2011) PLoS One 6: e23697
MeSH Terms: Bacterial Proteins, Binding Sites, Circadian Clocks, Circadian Rhythm Signaling Peptides and Proteins, Crystallography, X-Ray, Histidine Kinase, Microscopy, Electron, Phosphotransferases, Protein Conformation, Protein Interaction Domains and Motifs, Protein Kinases, Scattering, Small Angle, Synechococcus, X-Ray Diffraction
Added March 7, 2014
0 Communities
2 Members
0 Resources
14 MeSH Terms
Intermolecular associations determine the dynamics of the circadian KaiABC oscillator.
Qin X, Byrne M, Mori T, Zou P, Williams DR, McHaourab H, Johnson CH
(2010) Proc Natl Acad Sci U S A 107: 14805-10
MeSH Terms: Algorithms, Bacterial Proteins, Circadian Rhythm, Circadian Rhythm Signaling Peptides and Proteins, Electrophoresis, Polyacrylamide Gel, Fluorescence Polarization, Kinetics, Models, Biological, Models, Chemical, Molecular Dynamics Simulation, Mutation, Peptides, Phosphorylation, Protein Binding, Synechococcus
Added February 12, 2015
0 Communities
1 Members
0 Resources
15 MeSH Terms
Structures of KaiC circadian clock mutant proteins: a new phosphorylation site at T426 and mechanisms of kinase, ATPase and phosphatase.
Pattanayek R, Mori T, Xu Y, Pattanayek S, Johnson CH, Egli M
(2009) PLoS One 4: e7529
MeSH Terms: Adenosine Triphosphatases, Adenosine Triphosphate, Bacterial Proteins, Binding Sites, Catalytic Domain, Circadian Rhythm, Circadian Rhythm Signaling Peptides and Proteins, Crystallography, X-Ray, Gene Expression Regulation, Bacterial, Models, Biological, Mutation, Phosphoric Monoester Hydrolases, Phosphorylation, Phosphotransferases, Synechococcus
Added May 27, 2014
0 Communities
2 Members
0 Resources
15 MeSH Terms