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The publication data currently available has been vetted by Vanderbilt faculty, staff, administrators and trainees. The data itself is retrieved directly from NCBI's PubMed and is automatically updated on a weekly basis to ensure accuracy and completeness.

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Results: 1 to 10 of 15

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Sequence Characteristics Distinguish Transcribed Enhancers from Promoters and Predict Their Breadth of Activity.
Colbran LL, Chen L, Capra JA
(2019) Genetics 211: 1205-1217
MeSH Terms: Base Composition, Enhancer Elements, Genetic, Histone Code, Humans, Models, Genetic, Promoter Regions, Genetic, Support Vector Machine, Transcription Factors, Transcriptional Activation
Added March 3, 2020
0 Communities
1 Members
0 Resources
MeSH Terms
Prediction of gene regulatory enhancers across species reveals evolutionarily conserved sequence properties.
Chen L, Fish AE, Capra JA
(2018) PLoS Comput Biol 14: e1006484
MeSH Terms: Animals, Conserved Sequence, Enhancer Elements, Genetic, Evolution, Molecular, Genomics, Humans, Machine Learning, Mammals, Neural Networks, Computer, Sequence Alignment, Sequence Analysis, DNA, Support Vector Machine
Added March 3, 2020
0 Communities
1 Members
0 Resources
MeSH Terms
Development of an automated phenotyping algorithm for hepatorenal syndrome.
Koola JD, Davis SE, Al-Nimri O, Parr SK, Fabbri D, Malin BA, Ho SB, Matheny ME
(2018) J Biomed Inform 80: 87-95
MeSH Terms: Acute Kidney Injury, Aged, Algorithms, Diagnosis, Computer-Assisted, Electronic Health Records, Female, Hepatorenal Syndrome, Humans, Liver Cirrhosis, Male, Middle Aged, Natural Language Processing, Odds Ratio, Phenotype, ROC Curve, Retrospective Studies, Support Vector Machine
Added April 10, 2018
0 Communities
1 Members
0 Resources
17 MeSH Terms
Integrating linear optimization with structural modeling to increase HIV neutralization breadth.
Sevy AM, Panda S, Crowe JE, Meiler J, Vorobeychik Y
(2018) PLoS Comput Biol 14: e1005999
MeSH Terms: Algorithms, Amino Acid Motifs, Antibodies, Neutralizing, Computational Biology, Epitopes, HIV Antibodies, HIV Infections, HIV-1, Humans, Linear Models, Machine Learning, Regression Analysis, Software, Support Vector Machine
Added March 14, 2018
0 Communities
2 Members
0 Resources
14 MeSH Terms
Typical and atypical pathology in primary progressive aphasia variants.
Spinelli EG, Mandelli ML, Miller ZA, Santos-Santos MA, Wilson SM, Agosta F, Grinberg LT, Huang EJ, Trojanowski JQ, Meyer M, Henry ML, Comi G, Rabinovici G, Rosen HJ, Filippi M, Miller BL, Seeley WW, Gorno-Tempini ML
(2017) Ann Neurol 81: 430-443
MeSH Terms: Aged, Aged, 80 and over, Alzheimer Disease, Aphasia, Primary Progressive, Atrophy, Female, Frontotemporal Lobar Degeneration, Gray Matter, Humans, Male, Middle Aged, Pick Disease of the Brain, Primary Progressive Nonfluent Aphasia, Support Vector Machine, White Matter, tau Proteins
Added March 26, 2019
0 Communities
1 Members
0 Resources
MeSH Terms
An adaptive classification model for peptide identification.
Liang X, Xia Z, Jian L, Niu X, Link A
(2015) BMC Genomics 16 Suppl 11: S1
MeSH Terms: Algorithms, Computational Biology, Humans, Peptides, Support Vector Machine
Added February 15, 2016
0 Communities
1 Members
0 Resources
5 MeSH Terms
Machine learning-based prediction of drug-drug interactions by integrating drug phenotypic, therapeutic, chemical, and genomic properties.
Cheng F, Zhao Z
(2014) J Am Med Inform Assoc 21: e278-86
MeSH Terms: Artificial Intelligence, Bayes Theorem, Decision Trees, Drug Interactions, Humans, Logistic Models, Models, Theoretical, Molecular Structure, Pharmaceutical Preparations, Pharmacokinetics, ROC Curve, Support Vector Machine
Added May 27, 2014
0 Communities
1 Members
0 Resources
12 MeSH Terms
Applying active learning to high-throughput phenotyping algorithms for electronic health records data.
Chen Y, Carroll RJ, Hinz ER, Shah A, Eyler AE, Denny JC, Xu H
(2013) J Am Med Inform Assoc 20: e253-9
MeSH Terms: Algorithms, Artificial Intelligence, Electronic Health Records, Genetic Association Studies, Humans, Phenotype, Support Vector Machine
Added May 27, 2014
0 Communities
1 Members
0 Resources
7 MeSH Terms
Molecular signatures mostly associated with NK cells are predictive of relapse free survival in breast cancer patients.
Ascierto ML, Idowu MO, Zhao Y, Khalak H, Payne KK, Wang XY, Dumur CI, Bedognetti D, Tomei S, Ascierto PA, Shanker A, Bear HD, Wang E, Marincola FM, De Maria A, Manjili MH
(2013) J Transl Med 11: 145
MeSH Terms: Antigens, CD1d, Breast Neoplasms, Cell Adhesion Molecules, Cell Count, Disease-Free Survival, Female, Gene Expression Profiling, Gene Expression Regulation, Neoplastic, Humans, Killer Cells, Natural, Lymphocyte Activation, Lymphocyte Function-Associated Antigen-1, Neoplasm Recurrence, Local, Recurrence, Signal Transduction, Support Vector Machine, Treatment Outcome
Added March 7, 2014
0 Communities
1 Members
0 Resources
17 MeSH Terms
Benchmarking ligand-based virtual High-Throughput Screening with the PubChem database.
Butkiewicz M, Lowe EW, Mueller R, Mendenhall JL, Teixeira PL, Weaver CD, Meiler J
(2013) Molecules 18: 735-56
MeSH Terms: Algorithms, Animals, Area Under Curve, Computer Simulation, Databases, Chemical, Decision Trees, Drug Discovery, High-Throughput Screening Assays, Humans, Inhibitory Concentration 50, Ligands, Models, Chemical, Neural Networks, Computer, Quality Improvement, Quantitative Structure-Activity Relationship, ROC Curve, Support Vector Machine
Added January 24, 2015
1 Communities
1 Members
0 Resources
17 MeSH Terms