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Results: 1 to 10 of 11

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Comparative modeling and docking of chemokine-receptor interactions with Rosetta.
Wedemeyer MJ, Mueller BK, Bender BJ, Meiler J, Volkman BF
(2020) Biochem Biophys Res Commun 528: 389-397
MeSH Terms: Chemokines, Crystallography, X-Ray, Molecular Docking Simulation, Receptors, Chemokine, Software, Structural Homology, Protein
Added March 21, 2020
0 Communities
1 Members
0 Resources
6 MeSH Terms
Analysis of DNA binding by human factor xeroderma pigmentosum complementation group A (XPA) provides insight into its interactions with nucleotide excision repair substrates.
Sugitani N, Voehler MW, Roh MS, Topolska-Woś AM, Chazin WJ
(2017) J Biol Chem 292: 16847-16857
MeSH Terms: Amino Acid Substitution, DNA Repair, DNA Repair Enzymes, DNA, Single-Stranded, Humans, Mutation, Missense, Nuclear Magnetic Resonance, Biomolecular, Protein Binding, Saccharomyces cerevisiae, Saccharomyces cerevisiae Proteins, Structural Homology, Protein, Xeroderma Pigmentosum, Xeroderma Pigmentosum Group A Protein
Added March 24, 2018
0 Communities
1 Members
0 Resources
13 MeSH Terms
Structural and biochemical analyses reveal insights into covalent flavinylation of the Complex II homolog quinol:fumarate reductase.
Starbird CA, Maklashina E, Sharma P, Qualls-Histed S, Cecchini G, Iverson TM
(2017) J Biol Chem 292: 12921-12933
MeSH Terms: Amino Acid Substitution, Biocatalysis, Crystallography, X-Ray, Enzyme Stability, Escherichia coli, Escherichia coli Proteins, Flavin-Adenine Dinucleotide, Gene Deletion, Glutamic Acid, Hot Temperature, Models, Molecular, Molecular Docking Simulation, Mutagenesis, Site-Directed, Mutation, Oxidoreductases, Protein Conformation, Protein Denaturation, Protein Interaction Domains and Motifs, Protein Multimerization, Protein Processing, Post-Translational, Protein Subunits, Recombinant Proteins, Structural Homology, Protein, Succinate Dehydrogenase
Added April 1, 2019
0 Communities
1 Members
0 Resources
MeSH Terms
Assessment and challenges of ligand docking into comparative models of G-protein coupled receptors.
Nguyen ED, Norn C, Frimurer TM, Meiler J
(2013) PLoS One 8: e67302
MeSH Terms: Amino Acid Sequence, Binding Sites, Databases, Protein, Humans, Ligands, Molecular Docking Simulation, Molecular Sequence Data, Monte Carlo Method, Protein Binding, Protein Structure, Secondary, Receptors, G-Protein-Coupled, Software, Structural Homology, Protein, Thermodynamics
Added January 24, 2015
1 Communities
1 Members
0 Resources
14 MeSH Terms
Insights into congenital stationary night blindness based on the structure of G90D rhodopsin.
Singhal A, Ostermaier MK, Vishnivetskiy SA, Panneels V, Homan KT, Tesmer JJ, Veprintsev D, Deupi X, Gurevich VV, Schertler GF, Standfuss J
(2013) EMBO Rep 14: 520-6
MeSH Terms: Arrestin, Crystallography, X-Ray, Eye Diseases, Hereditary, Genetic Diseases, X-Linked, HEK293 Cells, Humans, Models, Molecular, Mutation, Missense, Myopia, Night Blindness, Protein Binding, Protein Stability, Protein Structure, Secondary, Protein Structure, Tertiary, Rhodopsin, Schiff Bases, Structural Homology, Protein, Transition Temperature
Added February 12, 2015
0 Communities
1 Members
0 Resources
18 MeSH Terms
Crystal structure of the human collagen XV trimerization domain: a potent trimerizing unit common to multiplexin collagens.
Wirz JA, Boudko SP, Lerch TF, Chapman MS, Bächinger HP
(2011) Matrix Biol 30: 9-15
MeSH Terms: Amino Acid Sequence, Circular Dichroism, Collagen, Crystallography, X-Ray, Humans, Molecular Sequence Data, Protein Denaturation, Protein Structure, Quaternary, Protein Structure, Secondary, Protein Structure, Tertiary, Recombinant Fusion Proteins, Structural Homology, Protein
Added November 2, 2017
0 Communities
1 Members
0 Resources
12 MeSH Terms
Metal-ion dependence of the active-site conformation of the translesion DNA polymerase Dpo4 from Sulfolobus solfataricus.
Irimia A, Loukachevitch LV, Eoff RL, Guengerich FP, Egli M
(2010) Acta Crystallogr Sect F Struct Biol Cryst Commun 66: 1013-8
MeSH Terms: Biocatalysis, Calcium, Catalytic Domain, Cations, Divalent, Crystallography, X-Ray, DNA Polymerase beta, Magnesium, Models, Molecular, Protein Binding, Structural Homology, Protein, Sulfolobus solfataricus
Added March 7, 2014
0 Communities
2 Members
0 Resources
11 MeSH Terms
A new protein architecture for processing alkylation damaged DNA: the crystal structure of DNA glycosylase AlkD.
Rubinson EH, Metz AH, O'Quin J, Eichman BF
(2008) J Mol Biol 381: 13-23
MeSH Terms: Alkylation, Amino Acid Sequence, Bacillus cereus, Binding Sites, Crystallography, X-Ray, DNA, DNA Damage, DNA Glycosylases, Humans, Methylguanidine, Models, Molecular, Molecular Sequence Data, Mutation, Protein Binding, Protein Structure, Tertiary, Sequence Alignment, Structural Homology, Protein
Added March 11, 2014
1 Communities
1 Members
0 Resources
17 MeSH Terms
Function of a conserved checkpoint recruitment domain in ATRIP proteins.
Ball HL, Ehrhardt MR, Mordes DA, Glick GG, Chazin WJ, Cortez D
(2007) Mol Cell Biol 27: 3367-77
MeSH Terms: Adaptor Proteins, Signal Transducing, Amino Acid Sequence, Animals, Binding Sites, Cell Cycle, Cell Cycle Proteins, DNA Damage, DNA, Fungal, DNA-Binding Proteins, Exodeoxyribonucleases, Humans, Magnetic Resonance Imaging, Models, Molecular, Molecular Sequence Data, Phosphoproteins, Protein Binding, Protein Structure, Tertiary, Replication Protein A, Saccharomyces cerevisiae, Saccharomyces cerevisiae Proteins, Sequence Alignment, Structural Homology, Protein, Transcription Factors
Added December 10, 2013
0 Communities
2 Members
0 Resources
23 MeSH Terms
The reovirus sigma1 aspartic acid sandwich: a trimerization motif poised for conformational change.
Schelling P, Guglielmi KM, Kirchner E, Paetzold B, Dermody TS, Stehle T
(2007) J Biol Chem 282: 11582-9
MeSH Terms: Amino Acid Motifs, Aspartic Acid, Capsid Proteins, Cell Adhesion Molecules, Crystallography, X-Ray, Models, Molecular, Mutation, Orthoreovirus, Mammalian, Protein Binding, Protein Structure, Quaternary, Protein Structure, Tertiary, Protein Subunits, Structural Homology, Protein
Added December 10, 2013
0 Communities
1 Members
0 Resources
13 MeSH Terms