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The publication data currently available has been vetted by Vanderbilt faculty, staff, administrators and trainees. The data itself is retrieved directly from NCBI's PubMed and is automatically updated on a weekly basis to ensure accuracy and completeness.

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Results: 1 to 10 of 305

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Contextualizing genetic risk score for disease screening and rare variant discovery.
Zhou D, Yu D, Scharf JM, Mathews CA, McGrath L, Cook E, Lee SH, Davis LK, Gamazon ER
(2021) Nat Commun 12: 4418
MeSH Terms: Clinical Decision-Making, Datasets as Topic, Genetic Predisposition to Disease, Genetic Testing, Genome-Wide Association Study, Humans, Models, Genetic, Multifactorial Inheritance, Polymorphism, Single Nucleotide, Risk Factors, Software, Whole Genome Sequencing
Added July 22, 2021
0 Communities
1 Members
0 Resources
12 MeSH Terms
Comparative modeling and docking of chemokine-receptor interactions with Rosetta.
Wedemeyer MJ, Mueller BK, Bender BJ, Meiler J, Volkman BF
(2020) Biochem Biophys Res Commun 528: 389-397
MeSH Terms: Chemokines, Crystallography, X-Ray, Molecular Docking Simulation, Receptors, Chemokine, Software, Structural Homology, Protein
Added March 21, 2020
0 Communities
1 Members
0 Resources
6 MeSH Terms
Integrative Protein Modeling in RosettaNMR from Sparse Paramagnetic Restraints.
Kuenze G, Bonneau R, Leman JK, Meiler J
(2019) Structure 27: 1721-1734.e5
MeSH Terms: Animals, Humans, Molecular Docking Simulation, Molecular Dynamics Simulation, Nuclear Magnetic Resonance, Biomolecular, Protein Conformation, Software
Added March 21, 2020
0 Communities
1 Members
0 Resources
7 MeSH Terms
scRNABatchQC: multi-samples quality control for single cell RNA-seq data.
Liu Q, Sheng Q, Ping J, Ramirez MA, Lau KS, Coffey RJ, Shyr Y
(2019) Bioinformatics 35: 5306-5308
MeSH Terms: Quality Control, RNA-Seq, Sequence Analysis, RNA, Software, Transcriptome, Whole Exome Sequencing
Added March 3, 2020
0 Communities
1 Members
0 Resources
6 MeSH Terms
Protein structure prediction using sparse NOE and RDC restraints with Rosetta in CASP13.
Kuenze G, Meiler J
(2019) Proteins 87: 1341-1350
MeSH Terms: Computational Biology, Magnetic Resonance Spectroscopy, Models, Molecular, Protein Conformation, Protein Folding, Proteins, Software
Added March 21, 2020
0 Communities
1 Members
0 Resources
7 MeSH Terms
Isomeric and Conformational Analysis of Small Drug and Drug-Like Molecules by Ion Mobility-Mass Spectrometry (IM-MS).
Phillips ST, Dodds JN, May JC, McLean JA
(2019) Methods Mol Biol 1939: 161-178
MeSH Terms: Algorithms, Amino Acids, Carbohydrates, Ion Mobility Spectrometry, Isomerism, Mass Spectrometry, Molecular Conformation, Pharmaceutical Preparations, Small Molecule Libraries, Software
Added August 7, 2019
1 Communities
0 Members
0 Resources
MeSH Terms
Recommendations towards standards for quantitative MRI (qMRI) and outstanding needs.
Keenan KE, Biller JR, Delfino JG, Boss MA, Does MD, Evelhoch JL, Griswold MA, Gunter JL, Hinks RS, Hoffman SW, Kim G, Lattanzi R, Li X, Marinelli L, Metzger GJ, Mukherjee P, Nordstrom RJ, Peskin AP, Perez E, Russek SE, Sahiner B, Serkova N, Shukla-Dave A, Steckner M, Stupic KF, Wilmes LJ, Wu HH, Zhang H, Jackson EF, Sullivan DC
(2019) J Magn Reson Imaging 49: e26-e39
MeSH Terms: Anthropometry, Breast, Decision Making, Deep Learning, Equipment Design, Female, Humans, Image Interpretation, Computer-Assisted, Image Processing, Computer-Assisted, Magnetic Resonance Imaging, Male, Phantoms, Imaging, Precision Medicine, Radiology, Interventional, Reference Standards, Reference Values, Reproducibility of Results, Robotics, Software
Added March 5, 2020
0 Communities
1 Members
0 Resources
19 MeSH Terms
Arrestin-3 scaffolding of the JNK3 cascade suggests a mechanism for signal amplification.
Perry NA, Kaoud TS, Ortega OO, Kaya AI, Marcus DJ, Pleinis JM, Berndt S, Chen Q, Zhan X, Dalby KN, Lopez CF, Iverson TM, Gurevich VV
(2019) Proc Natl Acad Sci U S A 116: 810-815
MeSH Terms: MAP Kinase Kinase 4, MAP Kinase Kinase 7, MAP Kinase Signaling System, Mitogen-Activated Protein Kinase 10, Models, Biological, Phosphorylation, Software, beta-Arrestin 2
Added April 1, 2019
0 Communities
2 Members
0 Resources
MeSH Terms
Quantitative assessment of cell population diversity in single-cell landscapes.
Liu Q, Herring CA, Sheng Q, Ping J, Simmons AJ, Chen B, Banerjee A, Li W, Gu G, Coffey RJ, Shyr Y, Lau KS
(2018) PLoS Biol 16: e2006687
MeSH Terms: Animals, Brain, CD4-Positive T-Lymphocytes, CD8-Positive T-Lymphocytes, Cluster Analysis, Computer Simulation, Databases, Nucleic Acid, Gene Expression Profiling, Humans, Intestinal Mucosa, Mice, Mice, Inbred C57BL, Models, Biological, Neoplasms, Experimental, Oligodendroglia, Sequence Analysis, RNA, Single-Cell Analysis, Software, Workflow
Added December 4, 2020
1 Communities
0 Members
0 Resources
MeSH Terms
Trajectory optimized NUFFT: Faster non-Cartesian MRI reconstruction through prior knowledge and parallel architectures.
Smith DS, Sengupta S, Smith SA, Brian Welch E
(2019) Magn Reson Med 81: 2064-2071
MeSH Terms: Algorithms, Deglutition, Esophagus, Fourier Analysis, Humans, Hypopharynx, Image Processing, Computer-Assisted, Magnetic Resonance Imaging, Male, Mouth, Optic Nerve, Phantoms, Imaging, Programming Languages, Reproducibility of Results, Software, Whole Body Imaging
Added April 10, 2019
0 Communities
1 Members
0 Resources
16 MeSH Terms