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Results: 1 to 10 of 134
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CTDGFinder: A Novel Homology-Based Algorithm for Identifying Closely Spaced Clusters of Tandemly Duplicated Genes.
Ortiz JF, Rokas A
(2017) Mol Biol Evol 34: 215-229
MeSH Terms: Algorithms, Animals, Evolution, Molecular, Genes, Duplicate, Genetic Linkage, Genome, Genomics, Humans, Multigene Family, Phylogeny, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Software, Synteny, Tandem Repeat Sequences
Added April 6, 2017
Ortiz JF, Rokas A
(2017) Mol Biol Evol 34: 215-229
MeSH Terms: Algorithms, Animals, Evolution, Molecular, Genes, Duplicate, Genetic Linkage, Genome, Genomics, Humans, Multigene Family, Phylogeny, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Software, Synteny, Tandem Repeat Sequences
Added April 6, 2017
0 Communities
1 Members
0 Resources
15 MeSH Terms
1 Members
0 Resources
15 MeSH Terms
Helicobacter pylori bab Paralog Distribution and Association with cagA, vacA, and homA/B Genotypes in American and South Korean Clinical Isolates.
Kim A, Servetas SL, Kang J, Kim J, Jang S, Cha HJ, Lee WJ, Kim J, Romero-Gallo J, Peek RM, Merrell DS, Cha JH
(2015) PLoS One 10: e0137078
MeSH Terms: Adult, Aged, Aged, 80 and over, Antigens, Bacterial, Bacterial Outer Membrane Proteins, Bacterial Proteins, Female, Genetic Variation, Genotype, Genotyping Techniques, Helicobacter pylori, Hospitals, Humans, Male, Middle Aged, Phylogeny, Republic of Korea, Sequence Homology, Nucleic Acid, United States
Added February 5, 2016
Kim A, Servetas SL, Kang J, Kim J, Jang S, Cha HJ, Lee WJ, Kim J, Romero-Gallo J, Peek RM, Merrell DS, Cha JH
(2015) PLoS One 10: e0137078
MeSH Terms: Adult, Aged, Aged, 80 and over, Antigens, Bacterial, Bacterial Outer Membrane Proteins, Bacterial Proteins, Female, Genetic Variation, Genotype, Genotyping Techniques, Helicobacter pylori, Hospitals, Humans, Male, Middle Aged, Phylogeny, Republic of Korea, Sequence Homology, Nucleic Acid, United States
Added February 5, 2016
0 Communities
1 Members
0 Resources
19 MeSH Terms
1 Members
0 Resources
19 MeSH Terms
HLTF's Ancient HIRAN Domain Binds 3' DNA Ends to Drive Replication Fork Reversal.
Kile AC, Chavez DA, Bacal J, Eldirany S, Korzhnev DM, Bezsonova I, Eichman BF, Cimprich KA
(2015) Mol Cell 58: 1090-100
MeSH Terms: Amino Acid Sequence, Base Sequence, Binding Sites, Blotting, Western, Cell Line, Tumor, Crystallography, X-Ray, DNA, DNA Replication, DNA, Single-Stranded, DNA-Binding Proteins, Humans, Magnetic Resonance Spectroscopy, Models, Genetic, Models, Molecular, Molecular Sequence Data, Mutation, Nucleic Acid Conformation, Protein Binding, Protein Structure, Tertiary, RNA Interference, Sequence Homology, Amino Acid, Sequence Homology, Nucleic Acid, Transcription Factors
Added November 10, 2015
Kile AC, Chavez DA, Bacal J, Eldirany S, Korzhnev DM, Bezsonova I, Eichman BF, Cimprich KA
(2015) Mol Cell 58: 1090-100
MeSH Terms: Amino Acid Sequence, Base Sequence, Binding Sites, Blotting, Western, Cell Line, Tumor, Crystallography, X-Ray, DNA, DNA Replication, DNA, Single-Stranded, DNA-Binding Proteins, Humans, Magnetic Resonance Spectroscopy, Models, Genetic, Models, Molecular, Molecular Sequence Data, Mutation, Nucleic Acid Conformation, Protein Binding, Protein Structure, Tertiary, RNA Interference, Sequence Homology, Amino Acid, Sequence Homology, Nucleic Acid, Transcription Factors
Added November 10, 2015
1 Communities
1 Members
0 Resources
23 MeSH Terms
1 Members
0 Resources
23 MeSH Terms
Upstream open reading frame in 5'-untranslated region reduces titin mRNA translational efficiency.
Cadar AG, Zhong L, Lin A, Valenzuela MO, Lim CC
(2014) Biochem Biophys Res Commun 453: 185-91
MeSH Terms: 5' Untranslated Regions, Animals, Base Sequence, Cell Line, Connectin, Doxorubicin, Gene Expression Regulation, HEK293 Cells, Half-Life, Humans, Mice, Molecular Sequence Data, Myocytes, Cardiac, Open Reading Frames, Polymorphism, Single Nucleotide, Protein Kinases, RNA Stability, RNA, Messenger, Rats, Sarcomeres, Sequence Homology, Nucleic Acid
Added February 19, 2015
Cadar AG, Zhong L, Lin A, Valenzuela MO, Lim CC
(2014) Biochem Biophys Res Commun 453: 185-91
MeSH Terms: 5' Untranslated Regions, Animals, Base Sequence, Cell Line, Connectin, Doxorubicin, Gene Expression Regulation, HEK293 Cells, Half-Life, Humans, Mice, Molecular Sequence Data, Myocytes, Cardiac, Open Reading Frames, Polymorphism, Single Nucleotide, Protein Kinases, RNA Stability, RNA, Messenger, Rats, Sarcomeres, Sequence Homology, Nucleic Acid
Added February 19, 2015
0 Communities
1 Members
0 Resources
21 MeSH Terms
1 Members
0 Resources
21 MeSH Terms
DNA methyltransferase 3a and mitogen-activated protein kinase signaling regulate the expression of fibroblast growth factor-inducible 14 (Fn14) during denervation-induced skeletal muscle atrophy.
Tajrishi MM, Shin J, Hetman M, Kumar A
(2014) J Biol Chem 289: 19985-99
MeSH Terms: Animals, Base Sequence, Conserved Sequence, CpG Islands, DNA, DNA (Cytosine-5-)-Methyltransferases, DNA Methylation, DNA Methyltransferase 3A, Gene Expression, Gene Knockdown Techniques, MAP Kinase Signaling System, Mice, Mice, Inbred C57BL, Models, Biological, Molecular Sequence Data, Muscle Denervation, Muscle, Skeletal, Muscular Atrophy, Promoter Regions, Genetic, RNA, Small Interfering, Receptors, Tumor Necrosis Factor, Sequence Homology, Nucleic Acid, Sp1 Transcription Factor, TWEAK Receptor, Transcription Factor AP-1
Added October 30, 2014
Tajrishi MM, Shin J, Hetman M, Kumar A
(2014) J Biol Chem 289: 19985-99
MeSH Terms: Animals, Base Sequence, Conserved Sequence, CpG Islands, DNA, DNA (Cytosine-5-)-Methyltransferases, DNA Methylation, DNA Methyltransferase 3A, Gene Expression, Gene Knockdown Techniques, MAP Kinase Signaling System, Mice, Mice, Inbred C57BL, Models, Biological, Molecular Sequence Data, Muscle Denervation, Muscle, Skeletal, Muscular Atrophy, Promoter Regions, Genetic, RNA, Small Interfering, Receptors, Tumor Necrosis Factor, Sequence Homology, Nucleic Acid, Sp1 Transcription Factor, TWEAK Receptor, Transcription Factor AP-1
Added October 30, 2014
0 Communities
1 Members
0 Resources
25 MeSH Terms
1 Members
0 Resources
25 MeSH Terms
Dual selection mechanisms drive efficient single-gene reverse genetics for rotavirus.
Trask SD, Taraporewala ZF, Boehme KW, Dermody TS, Patton JT
(2010) Proc Natl Acad Sci U S A 107: 18652-7
MeSH Terms: Amino Acid Sequence, Base Sequence, Cell Line, DNA, Viral, Genes, Viral, Genetic Engineering, Humans, Molecular Sequence Data, Mutation, RNA Interference, RNA-Binding Proteins, Recombinant Proteins, Recombination, Genetic, Rotavirus, Selection, Genetic, Sequence Homology, Amino Acid, Sequence Homology, Nucleic Acid, Temperature, Viral Nonstructural Proteins
Added December 10, 2013
Trask SD, Taraporewala ZF, Boehme KW, Dermody TS, Patton JT
(2010) Proc Natl Acad Sci U S A 107: 18652-7
MeSH Terms: Amino Acid Sequence, Base Sequence, Cell Line, DNA, Viral, Genes, Viral, Genetic Engineering, Humans, Molecular Sequence Data, Mutation, RNA Interference, RNA-Binding Proteins, Recombinant Proteins, Recombination, Genetic, Rotavirus, Selection, Genetic, Sequence Homology, Amino Acid, Sequence Homology, Nucleic Acid, Temperature, Viral Nonstructural Proteins
Added December 10, 2013
0 Communities
1 Members
0 Resources
19 MeSH Terms
1 Members
0 Resources
19 MeSH Terms
Vkappa polymorphisms in NOD mice are spread throughout the entire immunoglobulin kappa locus and are shared by other autoimmune strains.
Henry RA, Kendall PL, Woodward EJ, Hulbert C, Thomas JW
(2010) Immunogenetics 62: 507-20
MeSH Terms: Amino Acid Substitution, Animals, Autoimmunity, B-Lymphocytes, Base Sequence, DNA Primers, Diabetes Mellitus, Type 1, Genes, Immunoglobulin Heavy Chain, Genes, Immunoglobulin Light Chain, Immunoglobulin Variable Region, Immunoglobulin kappa-Chains, Insulin, Mice, Mice, Inbred NOD, Mice, Transgenic, Molecular Sequence Data, Polymorphism, Genetic, Sequence Homology, Nucleic Acid, Species Specificity, T-Lymphocytes
Added December 10, 2013
Henry RA, Kendall PL, Woodward EJ, Hulbert C, Thomas JW
(2010) Immunogenetics 62: 507-20
MeSH Terms: Amino Acid Substitution, Animals, Autoimmunity, B-Lymphocytes, Base Sequence, DNA Primers, Diabetes Mellitus, Type 1, Genes, Immunoglobulin Heavy Chain, Genes, Immunoglobulin Light Chain, Immunoglobulin Variable Region, Immunoglobulin kappa-Chains, Insulin, Mice, Mice, Inbred NOD, Mice, Transgenic, Molecular Sequence Data, Polymorphism, Genetic, Sequence Homology, Nucleic Acid, Species Specificity, T-Lymphocytes
Added December 10, 2013
2 Communities
2 Members
0 Resources
20 MeSH Terms
2 Members
0 Resources
20 MeSH Terms
Evolutionary flux of canonical microRNAs and mirtrons in Drosophila.
Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC
(2010) Nat Genet 42: 6-9; author reply 9-10
MeSH Terms: Animals, Base Sequence, Conserved Sequence, Drosophila, Evolution, Molecular, Gene Expression Profiling, Genes, Insect, Genome, Insect, MicroRNAs, Molecular Sequence Data, Nucleic Acid Conformation, Phylogeny, Selection, Genetic, Sequence Homology, Nucleic Acid
Added February 15, 2016
Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC
(2010) Nat Genet 42: 6-9; author reply 9-10
MeSH Terms: Animals, Base Sequence, Conserved Sequence, Drosophila, Evolution, Molecular, Gene Expression Profiling, Genes, Insect, Genome, Insect, MicroRNAs, Molecular Sequence Data, Nucleic Acid Conformation, Phylogeny, Selection, Genetic, Sequence Homology, Nucleic Acid
Added February 15, 2016
0 Communities
1 Members
0 Resources
14 MeSH Terms
1 Members
0 Resources
14 MeSH Terms
Benchmarking next-generation transcriptome sequencing for functional and evolutionary genomics.
Gibbons JG, Janson EM, Hittinger CT, Johnston M, Abbot P, Rokas A
(2009) Mol Biol Evol 26: 2731-44
MeSH Terms: Aedes, Alternative Splicing, Amino Acid Substitution, Animals, Anopheles, Contig Mapping, Evolution, Molecular, Female, Gene Expression Profiling, Genomics, INDEL Mutation, Male, Oligonucleotide Array Sequence Analysis, Proteome, RNA, Messenger, Reference Standards, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid
Added May 30, 2014
Gibbons JG, Janson EM, Hittinger CT, Johnston M, Abbot P, Rokas A
(2009) Mol Biol Evol 26: 2731-44
MeSH Terms: Aedes, Alternative Splicing, Amino Acid Substitution, Animals, Anopheles, Contig Mapping, Evolution, Molecular, Female, Gene Expression Profiling, Genomics, INDEL Mutation, Male, Oligonucleotide Array Sequence Analysis, Proteome, RNA, Messenger, Reference Standards, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid
Added May 30, 2014
0 Communities
1 Members
0 Resources
18 MeSH Terms
1 Members
0 Resources
18 MeSH Terms
A novel homozygous SCO2 mutation, p.G193S, causing fatal infantile cardioencephalomyopathy.
Mobley BC, Enns GM, Wong LJ, Vogel H
(2009) Clin Neuropathol 28: 143-9
MeSH Terms: Alkyl and Aryl Transferases, Base Sequence, Cardiomyopathies, Carrier Proteins, Consanguinity, Electron Transport, Electron Transport Complex IV, Fatal Outcome, Female, Humans, Infant, Newborn, Male, Membrane Proteins, Mitochondrial Encephalomyopathies, Mitochondrial Proteins, Molecular Chaperones, Molecular Sequence Data, Muscle, Skeletal, Mutation, Pedigree, Sequence Homology, Nucleic Acid
Added August 14, 2014
Mobley BC, Enns GM, Wong LJ, Vogel H
(2009) Clin Neuropathol 28: 143-9
MeSH Terms: Alkyl and Aryl Transferases, Base Sequence, Cardiomyopathies, Carrier Proteins, Consanguinity, Electron Transport, Electron Transport Complex IV, Fatal Outcome, Female, Humans, Infant, Newborn, Male, Membrane Proteins, Mitochondrial Encephalomyopathies, Mitochondrial Proteins, Molecular Chaperones, Molecular Sequence Data, Muscle, Skeletal, Mutation, Pedigree, Sequence Homology, Nucleic Acid
Added August 14, 2014
0 Communities
1 Members
0 Resources
21 MeSH Terms
1 Members
0 Resources
21 MeSH Terms
