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The publication data currently available has been vetted by Vanderbilt faculty, staff, administrators and trainees. The data itself is retrieved directly from NCBI's PubMed and is automatically updated on a weekly basis to ensure accuracy and completeness.

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Results: 1 to 10 of 91

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The GTEx Consortium atlas of genetic regulatory effects across human tissues.
GTEx Consortium
(2020) Science 369: 1318-1330
MeSH Terms: Datasets as Topic, Disease, Female, Gene Expression Regulation, Genome-Wide Association Study, Humans, Male, Organ Specificity, Quantitative Trait Loci, Sequence Analysis, RNA
Added September 15, 2020
0 Communities
1 Members
0 Resources
10 MeSH Terms
A vast resource of allelic expression data spanning human tissues.
Castel SE, Aguet F, Mohammadi P, GTEx Consortium, Ardlie KG, Lappalainen T
(2020) Genome Biol 21: 234
MeSH Terms: Alleles, Gene Expression, Genome, Human, Haplotypes, Humans, Polymorphism, Single Nucleotide, Sequence Analysis, RNA
Added September 15, 2020
0 Communities
1 Members
0 Resources
7 MeSH Terms
scRNABatchQC: multi-samples quality control for single cell RNA-seq data.
Liu Q, Sheng Q, Ping J, Ramirez MA, Lau KS, Coffey RJ, Shyr Y
(2019) Bioinformatics 35: 5306-5308
MeSH Terms: Quality Control, RNA-Seq, Sequence Analysis, RNA, Software, Transcriptome, Whole Exome Sequencing
Added March 3, 2020
0 Communities
1 Members
0 Resources
6 MeSH Terms
A gene co-expression network-based analysis of multiple brain tissues reveals novel genes and molecular pathways underlying major depression.
Gerring ZF, Gamazon ER, Derks EM, Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium
(2019) PLoS Genet 15: e1008245
MeSH Terms: Brain Chemistry, Complement C4a, Depressive Disorder, Major, Gene Expression Profiling, Gene Expression Regulation, Gene Regulatory Networks, Genome-Wide Association Study, Humans, Organ Specificity, Quantitative Trait Loci, Sequence Analysis, RNA
Added July 17, 2019
0 Communities
1 Members
0 Resources
11 MeSH Terms
Identification of Targetable Recurrent MAP3K8 Rearrangements in Melanomas Lacking Known Driver Mutations.
Lehmann BD, Shaver TM, Johnson DB, Li Z, Gonzalez-Ericsson PI, Sánchez V, Shyr Y, Sanders ME, Pietenpol JA
(2019) Mol Cancer Res 17: 1842-1853
MeSH Terms: Algorithms, Cell Line, Tumor, Databases, Genetic, Female, Gene Amplification, Gene Expression Regulation, Neoplastic, Humans, MAP Kinase Kinase Kinases, Male, Melanoma, Protein Kinase Inhibitors, Proto-Oncogene Proteins, Sequence Analysis, RNA, Sequence Deletion, Survival Analysis, Translocation, Genetic, Up-Regulation
Added March 30, 2020
0 Communities
1 Members
0 Resources
17 MeSH Terms
Deconvoluting Stress-Responsive Proteostasis Signaling Pathways for Pharmacologic Activation Using Targeted RNA Sequencing.
Grandjean JMD, Plate L, Morimoto RI, Bollong MJ, Powers ET, Wiseman RL
(2019) ACS Chem Biol 14: 784-795
MeSH Terms: Animals, HEK293 Cells, Heat Shock Transcription Factors, Humans, Mice, NF-E2 Transcription Factor, Oxidative Stress, Proteostasis, Sequence Analysis, RNA, Signal Transduction, Unfolded Protein Response
Added March 3, 2020
0 Communities
1 Members
0 Resources
MeSH Terms
Tissue-Specific Differential Expression of Novel Genes and Long Intergenic Noncoding RNAs in Humans With Extreme Response to Evoked Endotoxemia.
Ferguson JF, Xue C, Gao Y, Tian T, Shi J, Zhang X, Wang Y, Li YD, Wei Z, Li M, Zhang H, Reilly MP
(2018) Circ Genom Precis Med 11: e001907
MeSH Terms: Adipose Tissue, Animals, Endotoxemia, Female, Gene Expression Regulation, Genome-Wide Association Study, Humans, Immunity, Innate, Inflammation, Male, Mice, Monocytes, RNA, Long Noncoding, RNA, Messenger, Sequence Analysis, RNA
Added April 2, 2019
0 Communities
1 Members
0 Resources
15 MeSH Terms
Toward Cell Type-Specific In Vivo Dual RNA-Seq.
Frönicke L, Bronner DN, Byndloss MX, McLaughlin B, Bäumler AJ, Westermann AJ
(2018) Methods Enzymol 612: 505-522
MeSH Terms: Gene Library, RNA, Bacterial, Salmonella typhimurium, Sequence Analysis, RNA
Added March 30, 2020
0 Communities
1 Members
0 Resources
MeSH Terms
Quantitative assessment of cell population diversity in single-cell landscapes.
Liu Q, Herring CA, Sheng Q, Ping J, Simmons AJ, Chen B, Banerjee A, Li W, Gu G, Coffey RJ, Shyr Y, Lau KS
(2018) PLoS Biol 16: e2006687
MeSH Terms: Animals, Brain, CD4-Positive T-Lymphocytes, CD8-Positive T-Lymphocytes, Cluster Analysis, Computer Simulation, Databases, Nucleic Acid, Gene Expression Profiling, Humans, Intestinal Mucosa, Mice, Mice, Inbred C57BL, Models, Biological, Neoplasms, Experimental, Oligodendroglia, Sequence Analysis, RNA, Single-Cell Analysis, Software, Workflow
Added December 4, 2020
1 Communities
0 Members
0 Resources
MeSH Terms
Multiple Introductions and Antigenic Mismatch with Vaccines May Contribute to Increased Predominance of G12P[8] Rotaviruses in the United States.
Ogden KM, Tan Y, Akopov A, Stewart LS, McHenry R, Fonnesbeck CJ, Piya B, Carter MH, Fedorova NB, Halpin RA, Shilts MH, Edwards KM, Payne DC, Esona MD, Mijatovic-Rustempasic S, Chappell JD, Patton JT, Halasa NB, Das SR
(2019) J Virol 93:
MeSH Terms: Antigens, Viral, Capsid Proteins, Child, Preschool, Genotyping Techniques, Humans, Infant, Phylogeny, Population Surveillance, Rotavirus, Rotavirus Infections, Rotavirus Vaccines, Sequence Analysis, RNA, United States
Added April 3, 2019
0 Communities
1 Members
0 Resources
13 MeSH Terms