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The publication data currently available has been vetted by Vanderbilt faculty, staff, administrators and trainees. The data itself is retrieved directly from NCBI's PubMed and is automatically updated on a weekly basis to ensure accuracy and completeness.

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Results: 1 to 10 of 29

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Integrating transcriptome and proteome profiling: Strategies and applications.
Kumar D, Bansal G, Narang A, Basak T, Abbas T, Dash D
(2016) Proteomics 16: 2533-2544
MeSH Terms: Computational Biology, Protein Processing, Post-Translational, Proteomics, Ribosomes, Transcriptome
Added November 3, 2017
0 Communities
1 Members
0 Resources
5 MeSH Terms
Autophagy induction is a Tor- and Tp53-independent cell survival response in a zebrafish model of disrupted ribosome biogenesis.
Boglev Y, Badrock AP, Trotter AJ, Du Q, Richardson EJ, Parslow AC, Markmiller SJ, Hall NE, de Jong-Curtain TA, Ng AY, Verkade H, Ober EA, Field HA, Shin D, Shin CH, Hannan KM, Hannan RD, Pearson RB, Kim SH, Ess KC, Lieschke GJ, Stainier DY, Heath JK
(2013) PLoS Genet 9: e1003279
MeSH Terms: Animals, Autophagy, Cell Cycle Proteins, Cell Survival, Genes, Lethal, Mutation, Protein Biosynthesis, RNA, Ribosomal, 18S, Ribosomes, TOR Serine-Threonine Kinases, Tumor Suppressor Protein p53, Zebrafish, Zebrafish Proteins
Added September 24, 2013
1 Communities
2 Members
0 Resources
13 MeSH Terms
Early depression of Ankrd2 and Csrp3 mRNAs in the polyribosomal and whole tissue fractions in skeletal muscle with decreased voluntary running.
Roberts MD, Childs TE, Brown JD, Davis JW, Booth FW
(2012) J Appl Physiol (1985) 112: 1291-9
MeSH Terms: Adaptation, Physiological, Animals, Fatty Acids, Female, LIM Domain Proteins, Mitochondria, Muscle, Models, Animal, Muscle Proteins, Muscle, Skeletal, Polyribosomes, RNA, Messenger, Rats, Rats, Wistar, Running, Time Factors
Added October 23, 2017
0 Communities
1 Members
0 Resources
15 MeSH Terms
Global transcriptome changes underlying colony growth in the opportunistic human pathogen Aspergillus fumigatus.
Gibbons JG, Beauvais A, Beau R, McGary KL, Latgé JP, Rokas A
(2012) Eukaryot Cell 11: 68-78
MeSH Terms: Aspergillus fumigatus, Biofilms, Cell Wall, Chromosome Mapping, Drug Resistance, Fungal, Fungal Proteins, Gene Expression, Gene Expression Regulation, Fungal, Gene Regulatory Networks, Glycolysis, Metabolic Networks and Pathways, Multigene Family, Protein Biosynthesis, Ribosomes, Transcription Factors, Transcriptome
Added August 16, 2012
1 Communities
1 Members
0 Resources
16 MeSH Terms
Saccharomyces cerevisiae Gis2 interacts with the translation machinery and is orthogonal to myotonic dystrophy type 2 protein ZNF9.
Sammons MA, Samir P, Link AJ
(2011) Biochem Biophys Res Commun 406: 13-9
MeSH Terms: 5' Untranslated Regions, Amino Acid Sequence, Conserved Sequence, Evolution, Molecular, HEK293 Cells, Humans, Molecular Sequence Data, Myotonic Disorders, Myotonic Dystrophy, Phylogeny, Polyribosomes, Protein Biosynthesis, RNA-Binding Proteins, Saccharomyces cerevisiae, Saccharomyces cerevisiae Proteins
Added April 18, 2013
0 Communities
1 Members
0 Resources
15 MeSH Terms
ZNF9 activation of IRES-mediated translation of the human ODC mRNA is decreased in myotonic dystrophy type 2.
Sammons MA, Antons AK, Bendjennat M, Udd B, Krahe R, Link AJ
(2010) PLoS One 5: e9301
MeSH Terms: 5' Untranslated Regions, Binding Sites, Blotting, Western, Cell Line, Cells, Cultured, HeLa Cells, Humans, Myoblasts, Myotonic Dystrophy, Ornithine Decarboxylase, Protein Binding, Protein Biosynthesis, RNA Caps, RNA Interference, RNA, Messenger, RNA-Binding Proteins, Reverse Transcriptase Polymerase Chain Reaction, Ribosomes
Added April 18, 2013
0 Communities
1 Members
0 Resources
18 MeSH Terms
The myotonic dystrophy type 2 protein ZNF9 is part of an ITAF complex that promotes cap-independent translation.
Gerbasi VR, Link AJ
(2007) Mol Cell Proteomics 6: 1049-58
MeSH Terms: Cell Line, Centrifugation, Density Gradient, Humans, Multiprotein Complexes, Ornithine Decarboxylase, Protein Binding, Protein Biosynthesis, Protein Transport, Proteomics, RNA Caps, RNA-Binding Proteins, Regulatory Sequences, Ribonucleic Acid, Ribonucleoproteins, Ribosomes
Added April 18, 2013
0 Communities
1 Members
0 Resources
14 MeSH Terms
Systematic identification and functional screens of uncharacterized proteins associated with eukaryotic ribosomal complexes.
Fleischer TC, Weaver CM, McAfee KJ, Jennings JL, Link AJ
(2006) Genes Dev 20: 1294-307
MeSH Terms: Amino Acid Sequence, Cell Cycle Proteins, Gene Deletion, Mass Spectrometry, Molecular Sequence Data, Oncogene Proteins, Open Reading Frames, Proteomics, Ribosomal Proteins, Ribosomes, Saccharomyces cerevisiae, Saccharomyces cerevisiae Proteins
Added June 14, 2013
0 Communities
2 Members
0 Resources
12 MeSH Terms
Efficient and specific trypsin digestion of microgram to nanogram quantities of proteins in organic-aqueous solvent systems.
Strader MB, Tabb DL, Hervey WJ, Pan C, Hurst GB
(2006) Anal Chem 78: 125-34
MeSH Terms: Acetonitriles, Chaperonin 60, Chromatography, Liquid, Electrophoresis, Gel, Two-Dimensional, Hydrolysis, Mass Spectrometry, Peptide Fragments, Peptide Mapping, Proteins, Proteomics, Ribosomes, Rumex, Trypsin, Water
Added March 5, 2014
0 Communities
1 Members
0 Resources
14 MeSH Terms
MASPIC: intensity-based tandem mass spectrometry scoring scheme that improves peptide identification at high confidence.
Narasimhan C, Tabb DL, Verberkmoes NC, Thompson MR, Hettich RL, Uberbacher EC
(2005) Anal Chem 77: 7581-93
MeSH Terms: Algorithms, Amino Acid Sequence, Endopeptidase K, Molecular Sequence Data, Peptides, Rhodopseudomonas, Ribosomes, Tandem Mass Spectrometry
Added March 5, 2014
0 Communities
1 Members
0 Resources
8 MeSH Terms