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The publication data currently available has been vetted by Vanderbilt faculty, staff, administrators and trainees. The data itself is retrieved directly from NCBI's PubMed and is automatically updated on a weekly basis to ensure accuracy and completeness.

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Results: 1 to 10 of 55

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Tumor Mutational Load and Immune Parameters across Metastatic Renal Cell Carcinoma Risk Groups.
de Velasco G, Miao D, Voss MH, Hakimi AA, Hsieh JJ, Tannir NM, Tamboli P, Appleman LJ, Rathmell WK, Van Allen EM, Choueiri TK
(2016) Cancer Immunol Res 4: 820-822
MeSH Terms: Antibodies, Monoclonal, Antineoplastic Agents, Carcinoma, Renal Cell, Gene Expression Regulation, Neoplastic, Humans, Kidney Neoplasms, Mutation, Nivolumab, Prognosis, RNA, Neoplasm
Added October 30, 2019
0 Communities
1 Members
0 Resources
MeSH Terms
Comparison of Nanostring nCounter® Data on FFPE Colon Cancer Samples and Affymetrix Microarray Data on Matched Frozen Tissues.
Chen X, Deane NG, Lewis KB, Li J, Zhu J, Washington MK, Beauchamp RD
(2016) PLoS One 11: e0153784
MeSH Terms: Colonic Neoplasms, Formaldehyde, Frozen Sections, Gene Expression Regulation, Neoplastic, Humans, Oligonucleotide Array Sequence Analysis, Paraffin Embedding, RNA, Neoplasm, Survival Analysis, Tissue Fixation
Added August 10, 2016
1 Communities
1 Members
0 Resources
10 MeSH Terms
Gastric adenocarcinoma microRNA profiles in fixed tissue and in plasma reveal cancer-associated and Epstein-Barr virus-related expression patterns.
Treece AL, Duncan DL, Tang W, Elmore S, Morgan DR, Dominguez RL, Speck O, Meyers MO, Gulley ML
(2016) Lab Invest 96: 661-71
MeSH Terms: Adenocarcinoma, Aged, Aged, 80 and over, Case-Control Studies, Epstein-Barr Virus Infections, Female, Gene Expression Profiling, Gene Expression Regulation, Neoplastic, Herpesvirus 4, Human, Humans, Male, MicroRNAs, Middle Aged, Pilot Projects, RNA, Neoplasm, RNA, Viral, Stomach Neoplasms
Added May 18, 2016
0 Communities
1 Members
0 Resources
17 MeSH Terms
Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma.
Cancer Genome Atlas Research Network, Linehan WM, Spellman PT, Ricketts CJ, Creighton CJ, Fei SS, Davis C, Wheeler DA, Murray BA, Schmidt L, Vocke CD, Peto M, Al Mamun AA, Shinbrot E, Sethi A, Brooks S, Rathmell WK, Brooks AN, Hoadley KA, Robertson AG, Brooks D, Bowlby R, Sadeghi S, Shen H, Weisenberger DJ, Bootwalla M, Baylin SB, Laird PW, Cherniack AD, Saksena G, Haake S, Li J, Liang H, Lu Y, Mills GB, Akbani R, Leiserson MD, Raphael BJ, Anur P, Bottaro D, Albiges L, Barnabas N, Choueiri TK, Czerniak B, Godwin AK, Hakimi AA, Ho TH, Hsieh J, Ittmann M, Kim WY, Krishnan B, Merino MJ, Mills Shaw KR, Reuter VE, Reznik E, Shelley CS, Shuch B, Signoretti S, Srinivasan R, Tamboli P, Thomas G, Tickoo S, Burnett K, Crain D, Gardner J, Lau K, Mallery D, Morris S, Paulauskis JD, Penny RJ, Shelton C, Shelton WT, Sherman M, Thompson E, Yena P, Avedon MT, Bowen J, Gastier-Foster JM, Gerken M, Leraas KM, Lichtenberg TM, Ramirez NC, Santos T, Wise L, Zmuda E, Demchok JA, Felau I, Hutter CM, Sheth M, Sofia HJ, Tarnuzzer R, Wang Z, Yang L, Zenklusen JC, Zhang J, Ayala B, Baboud J, Chudamani S, Liu J, Lolla L, Naresh R, Pihl T, Sun Q, Wan Y, Wu Y, Ally A, Balasundaram M, Balu S, Beroukhim R, Bodenheimer T, Buhay C, Butterfield YS, Carlsen R, Carter SL, Chao H, Chuah E, Clarke A, Covington KR, Dahdouli M, Dewal N, Dhalla N, Doddapaneni HV, Drummond JA, Gabriel SB, Gibbs RA, Guin R, Hale W, Hawes A, Hayes DN, Holt RA, Hoyle AP, Jefferys SR, Jones SJ, Jones CD, Kalra D, Kovar C, Lewis L, Li J, Ma Y, Marra MA, Mayo M, Meng S, Meyerson M, Mieczkowski PA, Moore RA, Morton D, Mose LE, Mungall AJ, Muzny D, Parker JS, Perou CM, Roach J, Schein JE, Schumacher SE, Shi Y, Simons JV, Sipahimalani P, Skelly T, Soloway MG, Sougnez C, Tam A, Tan D, Thiessen N, Veluvolu U, Wang M, Wilkerson MD, Wong T, Wu J, Xi L, Zhou J, Bedford J, Chen F, Fu Y, Gerstein M, Haussler D, Kasaian K, Lai P, Ling S, Radenbaugh A, Van Den Berg D, Weinstein JN, Zhu J, Albert M, Alexopoulou I, Andersen JJ, Auman JT, Bartlett J, Bastacky S, Bergsten J, Blute ML, Boice L, Bollag RJ, Boyd J, Castle E, Chen YB, Cheville JC, Curley E, Davies B, DeVolk A, Dhir R, Dike L, Eckman J, Engel J, Harr J, Hrebinko R, Huang M, Huelsenbeck-Dill L, Iacocca M, Jacobs B, Lobis M, Maranchie JK, McMeekin S, Myers J, Nelson J, Parfitt J, Parwani A, Petrelli N, Rabeno B, Roy S, Salner AL, Slaton J, Stanton M, Thompson RH, Thorne L, Tucker K, Weinberger PM, Winemiller C, Zach LA, Zuna R
(2016) N Engl J Med 374: 135-45
MeSH Terms: Carcinoma, Papillary, CpG Islands, DNA Methylation, Humans, Kidney Neoplasms, MicroRNAs, Mutation, NF-E2-Related Factor 2, Phenotype, Proto-Oncogene Proteins c-met, RNA, Messenger, RNA, Neoplasm, Sequence Analysis, RNA, Signal Transduction
Added August 8, 2016
1 Communities
2 Members
0 Resources
14 MeSH Terms
TRIzol and Alu qPCR-based quantification of metastatic seeding within the skeleton.
Preston Campbell J, Mulcrone P, Masood SK, Karolak M, Merkel A, Hebron K, Zijlstra A, Sterling J, Elefteriou F
(2015) Sci Rep 5: 12635
MeSH Terms: Alu Elements, Animals, Biomarkers, Tumor, Bone Neoplasms, Cell Line, Tumor, DNA, Neoplasm, Gene Expression Profiling, Genetic Markers, Guanidines, Mice, Mice, Nude, Phenols, RNA, Neoplasm, Real-Time Polymerase Chain Reaction, Reproducibility of Results, Sensitivity and Specificity
Added September 14, 2016
1 Communities
3 Members
0 Resources
16 MeSH Terms
Mitochondria sequence mapping strategies and practicability of mitochondria variant detection from exome and RNA sequencing data.
Zhang P, Samuels DC, Lehmann B, Stricker T, Pietenpol J, Shyr Y, Guo Y
(2016) Brief Bioinform 17: 224-32
MeSH Terms: Algorithms, Base Sequence, Breast Neoplasms, Cell Line, Tumor, DNA, Mitochondrial, Exome, Genetic Variation, Humans, Molecular Sequence Data, Neoplastic Cells, Circulating, Polymorphism, Single Nucleotide, RNA, Neoplasm, Reproducibility of Results, Sensitivity and Specificity, Sequence Analysis, RNA
Added February 15, 2016
1 Communities
2 Members
0 Resources
15 MeSH Terms
Comprehensive genomic characterization of head and neck squamous cell carcinomas.
Cancer Genome Atlas Network
(2015) Nature 517: 576-82
MeSH Terms: Carcinoma, Squamous Cell, DNA Copy Number Variations, DNA, Neoplasm, Female, Gene Expression Regulation, Neoplastic, Genome, Human, Genomics, Head and Neck Neoplasms, Humans, Male, Molecular Targeted Therapy, Mutation, Oncogenes, RNA, Neoplasm, Signal Transduction, Squamous Cell Carcinoma of Head and Neck, Transcription Factors
Added August 8, 2016
0 Communities
1 Members
0 Resources
17 MeSH Terms
Proteogenomic characterization of human colon and rectal cancer.
Zhang B, Wang J, Wang X, Zhu J, Liu Q, Shi Z, Chambers MC, Zimmerman LJ, Shaddox KF, Kim S, Davies SR, Wang S, Wang P, Kinsinger CR, Rivers RC, Rodriguez H, Townsend RR, Ellis MJ, Carr SA, Tabb DL, Coffey RJ, Slebos RJ, Liebler DC, NCI CPTAC
(2014) Nature 513: 382-7
MeSH Terms: Chromosomes, Human, Pair 20, Colonic Neoplasms, CpG Islands, DNA Copy Number Variations, DNA Methylation, Genomics, Hepatocyte Nuclear Factor 4, Humans, Microsatellite Repeats, Mitochondrial Membrane Transport Proteins, Mutation, Missense, Neoplasm Proteins, Point Mutation, Proteome, Proteomics, Proto-Oncogene Proteins pp60(c-src), RNA, Messenger, RNA, Neoplasm, Rectal Neoplasms, Transcriptome
Added December 4, 2014
0 Communities
3 Members
0 Resources
20 MeSH Terms
ClearCode34: A prognostic risk predictor for localized clear cell renal cell carcinoma.
Brooks SA, Brannon AR, Parker JS, Fisher JC, Sen O, Kattan MW, Hakimi AA, Hsieh JJ, Choueiri TK, Tamboli P, Maranchie JK, Hinds P, Miller CR, Nielsen ME, Rathmell WK
(2014) Eur Urol 66: 77-84
MeSH Terms: Adult, Aged, Aged, 80 and over, Animals, Biomarkers, Tumor, Carcinoma, Renal Cell, Disease-Free Survival, Female, Gene Expression, Gene Expression Profiling, Humans, Kidney Neoplasms, Male, Middle Aged, Neoplasm Recurrence, Local, RNA, Neoplasm, Risk Assessment, Sequence Analysis, RNA, Survival Rate
Added October 17, 2015
0 Communities
1 Members
0 Resources
19 MeSH Terms
Signaling between transforming growth factor ╬▓ (TGF-╬▓) and transcription factor SNAI2 represses expression of microRNA miR-203 to promote epithelial-mesenchymal transition and tumor metastasis.
Ding X, Park SI, McCauley LK, Wang CY
(2013) J Biol Chem 288: 10241-53
MeSH Terms: Animals, Breast Neoplasms, Cell Line, Tumor, Dogs, Epithelial-Mesenchymal Transition, Female, Gene Expression Regulation, Neoplastic, Humans, MicroRNAs, Neoplasm Metastasis, Neoplasm Proteins, RNA, Neoplasm, Signal Transduction, Snail Family Transcription Factors, Transcription Factors, Transforming Growth Factor beta
Added March 5, 2014
0 Communities
1 Members
0 Resources
16 MeSH Terms