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The publication data currently available has been vetted by Vanderbilt faculty, staff, administrators and trainees. The data itself is retrieved directly from NCBI's PubMed and is automatically updated on a weekly basis to ensure accuracy and completeness.

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Results: 1 to 10 of 12

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Toward Cell Type-Specific In Vivo Dual RNA-Seq.
Frönicke L, Bronner DN, Byndloss MX, McLaughlin B, Bäumler AJ, Westermann AJ
(2018) Methods Enzymol 612: 505-522
MeSH Terms: Gene Library, RNA, Bacterial, Salmonella typhimurium, Sequence Analysis, RNA
Added March 30, 2020
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MeSH Terms
Zinc regulates a switch between primary and alternative S18 ribosomal proteins in Mycobacterium tuberculosis.
Prisic S, Hwang H, Dow A, Barnaby O, Pan TS, Lonzanida JA, Chazin WJ, Steen H, Husson RN
(2015) Mol Microbiol 97: 263-80
MeSH Terms: Gene Expression Regulation, Bacterial, Mycobacterium tuberculosis, RNA, Bacterial, RNA, Ribosomal, Ribosomal Protein S6, Ribosomal Proteins, Zinc
Added March 11, 2020
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MeSH Terms
Acinetobacter baumannii response to host-mediated zinc limitation requires the transcriptional regulator Zur.
Mortensen BL, Rathi S, Chazin WJ, Skaar EP
(2014) J Bacteriol 196: 2616-26
MeSH Terms: Acinetobacter Infections, Acinetobacter baumannii, Animals, Bacterial Proteins, Calgranulin B, Gene Expression Regulation, Bacterial, Liver, Mice, Mice, Inbred C57BL, Mice, Knockout, Mutation, Pneumonia, Bacterial, RNA, Bacterial, Regulatory Elements, Transcriptional, Zinc
Added May 19, 2014
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15 MeSH Terms
Variations of oral microbiota are associated with pancreatic diseases including pancreatic cancer.
Farrell JJ, Zhang L, Zhou H, Chia D, Elashoff D, Akin D, Paster BJ, Joshipura K, Wong DT
(2012) Gut 61: 582-8
MeSH Terms: Aged, Aged, 80 and over, Bacteria, Bacterial Typing Techniques, Biomarkers, Case-Control Studies, Female, Humans, Male, Metagenome, Middle Aged, Pancreatic Diseases, Pancreatic Neoplasms, Pancreatitis, Chronic, Phylogeny, RNA, Bacterial, RNA, Ribosomal, 16S, Real-Time Polymerase Chain Reaction, Saliva, Sensitivity and Specificity
Added October 15, 2011
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20 MeSH Terms
Repression of Clostridium difficile toxin gene expression by CodY.
Dineen SS, Villapakkam AC, Nordman JT, Sonenshein AL
(2007) Mol Microbiol 66: 206-19
MeSH Terms: Bacterial Proteins, Bacterial Toxins, Clostridioides difficile, DNA Footprinting, DNA, Bacterial, Electrophoretic Mobility Shift Assay, Enterotoxins, Gene Deletion, Gene Expression Regulation, Bacterial, Mutagenesis, Insertional, Promoter Regions, Genetic, Protein Binding, RNA, Bacterial, RNA, Messenger, Repressor Proteins, Sigma Factor, Transcription, Genetic
Added March 3, 2020
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17 MeSH Terms
Transcriptional profiling of a Staphylococcus aureus clinical isolate and its isogenic agr and sarA mutants reveals global differences in comparison to the laboratory strain RN6390.
Cassat J, Dunman PM, Murphy E, Projan SJ, Beenken KE, Palm KJ, Yang SJ, Rice KC, Bayles KW, Smeltzer MS
(2006) Microbiology (Reading) 152: 3075-3090
MeSH Terms: Adaptation, Physiological, Bacterial Proteins, Biofilms, Gene Deletion, Gene Expression Profiling, Gene Expression Regulation, Bacterial, Oligonucleotide Array Sequence Analysis, RNA, Bacterial, RNA, Messenger, Regulon, Staphylococcal Infections, Staphylococcus aureus, Trans-Activators
Added January 20, 2015
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13 MeSH Terms
Discovery of aminoglycoside mimetics by NMR-based screening of Escherichia coli A-site RNA.
Yu L, Oost TK, Schkeryantz JM, Yang J, Janowick D, Fesik SW
(2003) J Am Chem Soc 125: 4444-50
MeSH Terms: Aminoglycosides, Aminoquinolines, Anti-Bacterial Agents, Binding, Competitive, Biomimetic Materials, Escherichia coli, Ligands, Models, Molecular, Nuclear Magnetic Resonance, Biomolecular, RNA, Bacterial, RNA, Ribosomal, 16S
Added March 5, 2014
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11 MeSH Terms
Characterization of expression of a functionally conserved Helicobacter pylori methyltransferase-encoding gene within inflamed mucosa and during in vitro growth.
Takeuchi H, Israel DA, Miller GG, Donahue JP, Krishna U, Gaus K, Peek RM
(2002) J Infect Dis 186: 1186-9
MeSH Terms: Gastric Mucosa, Gene Expression Regulation, Bacterial, Genes, Bacterial, Helicobacter Infections, Helicobacter pylori, Humans, Immunoblotting, Inflammation, Methyltransferases, RNA, Bacterial, Reverse Transcriptase Polymerase Chain Reaction
Added March 5, 2014
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11 MeSH Terms
Quantitative detection of Helicobacter pylori gene expression in vivo and relationship to gastric pathology.
Peek RM, van Doorn LJ, Donahue JP, Tham KT, Figueiredo C, Blaser MJ, Miller GG
(2000) Infect Immun 68: 5488-95
MeSH Terms: Bacterial Proteins, Duodenal Ulcer, Gastric Mucosa, Gene Expression, Helicobacter Infections, Helicobacter pylori, Humans, Polymerase Chain Reaction, RNA, Bacterial, RNA, Messenger, RNA, Ribosomal, 16S, Reverse Transcriptase Polymerase Chain Reaction, Sequence Analysis, DNA, Transcription, Genetic, Virulence
Added March 5, 2014
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15 MeSH Terms
Unique structural and stabilizing roles for the individual pseudouridine residues in the 1920 region of Escherichia coli 23S rRNA.
Meroueh M, Grohar PJ, Qiu J, SantaLucia J, Scaringe SA, Chow CS
(2000) Nucleic Acids Res 28: 2075-83
MeSH Terms: Base Sequence, Circular Dichroism, Escherichia coli, Models, Molecular, Nuclear Magnetic Resonance, Biomolecular, Nucleic Acid Conformation, Oligoribonucleotides, Organophosphorus Compounds, Pseudouridine, RNA, Bacterial, RNA, Ribosomal, 23S, Thermodynamics
Added March 5, 2014
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12 MeSH Terms