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The publication data currently available has been vetted by Vanderbilt faculty, staff, administrators and trainees. The data itself is retrieved directly from NCBI's PubMed and is automatically updated on a weekly basis to ensure accuracy and completeness.

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Results: 1 to 10 of 74

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Trypsin and MALDI matrix pre-coated targets simplify sample preparation for mapping proteomic distributions within biological tissues by imaging mass spectrometry.
Zubair F, Laibinis PE, Swisher WG, Yang J, Spraggins JM, Norris JL, Caprioli RM
(2016) J Mass Spectrom 51: 1168-1179
MeSH Terms: Animals, Brain Chemistry, Molecular Imaging, Peptide Fragments, Peptide Mapping, Proteomics, Rats, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Trypsin
Added March 10, 2017
1 Communities
3 Members
0 Resources
9 MeSH Terms
Site-specific mapping and quantification of protein S-sulphenylation in cells.
Yang J, Gupta V, Carroll KS, Liebler DC
(2014) Nat Commun 5: 4776
MeSH Terms: Acetylation, Cell Line, Tumor, Cysteine, Epidermal Growth Factor, Epithelial Cells, Gene Expression, Humans, Hydrogen Peroxide, Hypoxia-Inducible Factor 1, alpha Subunit, Molecular Sequence Annotation, Oxidation-Reduction, Peptide Mapping, Phosphorylation, Protein Processing, Post-Translational, Sirtuins, Sulfenic Acids, Ubiquitination
Added January 20, 2015
0 Communities
1 Members
0 Resources
17 MeSH Terms
Integrating genomic, transcriptomic, and interactome data to improve Peptide and protein identification in shotgun proteomics.
Wang X, Zhang B
(2014) J Proteome Res 13: 2715-23
MeSH Terms: Animals, Gene Expression Profiling, Humans, Peptide Mapping, Protein Interaction Mapping, Proteome, Proteomics, Tandem Mass Spectrometry
Added May 21, 2014
0 Communities
1 Members
0 Resources
8 MeSH Terms
IDPQuantify: combining precursor intensity with spectral counts for protein and peptide quantification.
Chen YY, Chambers MC, Li M, Ham AJ, Turner JL, Zhang B, Tabb DL
(2013) J Proteome Res 12: 4111-21
MeSH Terms: Fungal Proteins, Humans, Peptide Mapping, Principal Component Analysis, Proteome, Proteomics, Reference Standards, Sensitivity and Specificity, Software, Tandem Mass Spectrometry, Yeasts
Added March 7, 2014
0 Communities
3 Members
0 Resources
11 MeSH Terms
Comprehensive proteomics analysis reveals new substrates and regulators of the fission yeast clp1/cdc14 phosphatase.
Chen JS, Broadus MR, McLean JR, Feoktistova A, Ren L, Gould KL
(2013) Mol Cell Proteomics 12: 1074-86
MeSH Terms: Active Transport, Cell Nucleus, CDC2 Protein Kinase, Cell Cycle Proteins, Cell Nucleus, Karyopherins, Peptide Mapping, Phosphorylation, Protein Interaction Mapping, Protein Interaction Maps, Protein Processing, Post-Translational, Protein Tyrosine Phosphatases, Proteomics, Schizosaccharomyces, Schizosaccharomyces pombe Proteins
Added March 5, 2014
0 Communities
1 Members
0 Resources
14 MeSH Terms
MALDI MS imaging as a powerful tool for investigating synovial tissue.
Kriegsmann M, Seeley EH, Schwarting A, Kriegsmann J, Otto M, Thabe H, Dierkes B, Biehl C, Sack U, Wellmann A, Kahaly GJ, Schwamborn K, Caprioli RM
(2012) Scand J Rheumatol 41: 305-9
MeSH Terms: Arthritis, Rheumatoid, Biomarkers, Humans, Osteoarthritis, Peptide Mapping, Proteomics, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Synovial Membrane
Added March 3, 2020
0 Communities
1 Members
0 Resources
MeSH Terms
Pepitome: evaluating improved spectral library search for identification complementarity and quality assessment.
Dasari S, Chambers MC, Martinez MA, Carpenter KL, Ham AJ, Vega-Montoto LJ, Tabb DL
(2012) J Proteome Res 11: 1686-95
MeSH Terms: Algorithms, Blood Proteins, Cell Line, Databases, Protein, Humans, Models, Statistical, Neural Networks, Computer, Peptide Mapping, Proteome, Reference Standards, Search Engine, Sequence Analysis, Protein, Serum Albumin, Bovine, Software, Tandem Mass Spectrometry
Added August 21, 2013
0 Communities
2 Members
0 Resources
15 MeSH Terms
Protein identification using customized protein sequence databases derived from RNA-Seq data.
Wang X, Slebos RJ, Wang D, Halvey PJ, Tabb DL, Liebler DC, Zhang B
(2012) J Proteome Res 11: 1009-17
MeSH Terms: Amino Acid Sequence, Base Sequence, Cell Line, Tumor, Computational Biology, Databases, Protein, Gene Expression Profiling, Humans, Molecular Sequence Data, Peptide Mapping, Peptides, Proteins, RNA, Sequence Analysis, RNA, Transcriptome
Added July 26, 2012
1 Communities
4 Members
0 Resources
14 MeSH Terms
Proteomic consequences of a single gene mutation in a colorectal cancer model.
Halvey PJ, Zhang B, Coffey RJ, Liebler DC, Slebos RJ
(2012) J Proteome Res 11: 1184-95
MeSH Terms: Cell Line, Tumor, Cluster Analysis, Colorectal Neoplasms, Cytoplasm, Genes, APC, Humans, Models, Genetic, Mutation, Peptide Mapping, Proteome, Proteomics, Reproducibility of Results, Signal Transduction, Tandem Mass Spectrometry
Added March 12, 2014
1 Communities
4 Members
0 Resources
14 MeSH Terms
Spatial mapping by imaging mass spectrometry offers advancements for rapid definition of human skin proteomic signatures.
Taverna D, Nanney LB, Pollins AC, Sindona G, Caprioli R
(2011) Exp Dermatol 20: 642-7
MeSH Terms: Adult, Aged, Dermis, Epidermis, Humans, Mass Spectrometry, Middle Aged, Peptide Mapping, Proteome, Proteomics, Skin, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
Added May 28, 2014
0 Communities
2 Members
0 Resources
12 MeSH Terms