Other search tools

About this data

The publication data currently available has been vetted by Vanderbilt faculty, staff, administrators and trainees. The data itself is retrieved directly from NCBI's PubMed and is automatically updated on a weekly basis to ensure accuracy and completeness.

If you have any questions or comments, please contact us.

Results: 1 to 10 of 77

Publication Record

Connections

RNAseq by Total RNA Library Identifies Additional RNAs Compared to Poly(A) RNA Library.
Guo Y, Zhao S, Sheng Q, Guo M, Lehmann B, Pietenpol J, Samuels DC, Shyr Y
(2015) Biomed Res Int 2015: 862130
MeSH Terms: Gene Expression Profiling, Gene Library, Humans, Open Reading Frames, Poly A, RNA, RNA, Ribosomal, Sequence Analysis, RNA
Added February 15, 2016
1 Communities
3 Members
0 Resources
8 MeSH Terms
Oxidative cyclizations in orthosomycin biosynthesis expand the known chemistry of an oxygenase superfamily.
McCulloch KM, McCranie EK, Smith JA, Sarwar M, Mathieu JL, Gitschlag BL, Du Y, Bachmann BO, Iverson TM
(2015) Proc Natl Acad Sci U S A 112: 11547-52
MeSH Terms: Aminoglycosides, Anti-Bacterial Agents, Catalytic Domain, Crystallography, X-Ray, Cyclization, Hydrogen, Hygromycin B, Metals, Micromonospora, Multigene Family, Oligosaccharides, Open Reading Frames, Oxidation-Reduction, Oxygen, Oxygenases, Phylogeny, Protein Binding, Protein Structure, Secondary, Reproducibility of Results, Streptomyces
Added April 1, 2019
0 Communities
1 Members
0 Resources
MeSH Terms
Revealing Missing Human Protein Isoforms Based on Ab Initio Prediction, RNA-seq and Proteomics.
Hu Z, Scott HS, Qin G, Zheng G, Chu X, Xie L, Adelson DL, Oftedal BE, Venugopal P, Babic M, Hahn CN, Zhang B, Wang X, Li N, Wei C
(2015) Sci Rep 5: 10940
MeSH Terms: Algorithms, Alternative Splicing, Computational Biology, Datasets as Topic, Humans, Open Reading Frames, Protein Isoforms, Proteomics, Reproducibility of Results, Sequence Analysis, RNA, Transcription, Genetic
Added February 15, 2016
0 Communities
1 Members
0 Resources
11 MeSH Terms
Upstream open reading frame in 5'-untranslated region reduces titin mRNA translational efficiency.
Cadar AG, Zhong L, Lin A, Valenzuela MO, Lim CC
(2014) Biochem Biophys Res Commun 453: 185-91
MeSH Terms: 5' Untranslated Regions, Animals, Base Sequence, Cell Line, Connectin, Doxorubicin, Gene Expression Regulation, HEK293 Cells, Half-Life, Humans, Mice, Molecular Sequence Data, Myocytes, Cardiac, Open Reading Frames, Polymorphism, Single Nucleotide, Protein Kinases, RNA Stability, RNA, Messenger, Rats, Sarcomeres, Sequence Homology, Nucleic Acid
Added February 19, 2015
0 Communities
1 Members
0 Resources
21 MeSH Terms
An expressed retrogene of the master embryonic stem cell gene POU5F1 is associated with prostate cancer susceptibility.
Breyer JP, Dorset DC, Clark TA, Bradley KM, Wahlfors TA, McReynolds KM, Maynard WH, Chang SS, Cookson MS, Smith JA, Schleutker J, Dupont WD, Smith JR
(2014) Am J Hum Genet 94: 395-404
MeSH Terms: Adolescent, Adult, Aged, Alleles, Case-Control Studies, Cell Nucleus, Cell Transformation, Neoplastic, Databases, Genetic, Embryonic Stem Cells, Gene Expression Regulation, Neoplastic, Genetic Predisposition to Disease, Genetic Variation, Genotype, Haplotypes, Humans, Male, Middle Aged, Mutation, Missense, Octamer Transcription Factor-3, Open Reading Frames, Prostatic Neoplasms, Quantitative Trait Loci, Risk, Sequence Analysis, DNA, Transcription, Genetic, Young Adult
Added March 20, 2014
0 Communities
2 Members
0 Resources
26 MeSH Terms
Use of a promiscuous, constitutively-active bacterial enhancer-binding protein to define the σ⁵⁴ (RpoN) regulon of Salmonella Typhimurium LT2.
Samuels DJ, Frye JG, Porwollik S, McClelland M, Mrázek J, Hoover TR, Karls AC
(2013) BMC Genomics 14: 602
MeSH Terms: Binding Sites, Chromatin Immunoprecipitation, DNA-Binding Proteins, Gene Expression Regulation, Bacterial, Oligonucleotide Array Sequence Analysis, Open Reading Frames, Operon, Promoter Regions, Genetic, RNA Polymerase Sigma 54, Regulon, Salmonella typhimurium, Transcriptional Activation
Added December 12, 2013
0 Communities
1 Members
0 Resources
12 MeSH Terms
Novel FOXF1 mutations in sporadic and familial cases of alveolar capillary dysplasia with misaligned pulmonary veins imply a role for its DNA binding domain.
Sen P, Yang Y, Navarro C, Silva I, Szafranski P, Kolodziejska KE, Dharmadhikari AV, Mostafa H, Kozakewich H, Kearney D, Cahill JB, Whitt M, Bilic M, Margraf L, Charles A, Goldblatt J, Gibson K, Lantz PE, Garvin AJ, Petty J, Kiblawi Z, Zuppan C, McConkie-Rosell A, McDonald MT, Peterson-Carmichael SL, Gaede JT, Shivanna B, Schady D, Friedlich PS, Hays SR, Palafoll IV, Siebers-Renelt U, Bohring A, Finn LS, Siebert JR, Galambos C, Nguyen L, Riley M, Chassaing N, Vigouroux A, Rocha G, Fernandes S, Brumbaugh J, Roberts K, Ho-Ming L, Lo IF, Lam S, Gerychova R, Jezova M, Valaskova I, Fellmann F, Afshar K, Giannoni E, Muhlethaler V, Liang J, Beckmann JS, Lioy J, Deshmukh H, Srinivasan L, Swarr DT, Sloman M, Shaw-Smith C, van Loon RL, Hagman C, Sznajer Y, Barrea C, Galant C, Detaille T, Wambach JA, Cole FS, Hamvas A, Prince LS, Diderich KE, Brooks AS, Verdijk RM, Ravindranathan H, Sugo E, Mowat D, Baker ML, Langston C, Welty S, Stankiewicz P
(2013) Hum Mutat 34: 801-11
MeSH Terms: Amino Acid Sequence, Chromosome Mapping, Databases, Genetic, Female, Forkhead Transcription Factors, Gene Dosage, Gene Order, Humans, Infant, Infant, Newborn, Male, Molecular Sequence Data, Mutation, Open Reading Frames, Persistent Fetal Circulation Syndrome, Protein Interaction Domains and Motifs, Sequence Alignment
Added January 20, 2015
0 Communities
1 Members
0 Resources
17 MeSH Terms
Evolution and taxonomic classification of human papillomavirus 16 (HPV16)-related variant genomes: HPV31, HPV33, HPV35, HPV52, HPV58 and HPV67.
Chen Z, Schiffman M, Herrero R, Desalle R, Anastos K, Segondy M, Sahasrabuddhe VV, Gravitt PE, Hsing AW, Burk RD
(2011) PLoS One 6: e20183
MeSH Terms: Algorithms, Alphapapillomavirus, Bayes Theorem, Biological Evolution, Female, Genetic Variation, Genome, Human papillomavirus 16, Humans, Open Reading Frames, Phylogeny, Polymorphism, Single Nucleotide, Uterine Cervical Neoplasms
Added March 5, 2014
0 Communities
1 Members
0 Resources
13 MeSH Terms
Genome-wide transcriptional dependence on conserved regions of Mot1.
Venters BJ, Irvin JD, Gramlich P, Pugh BF
(2011) Mol Cell Biol 31: 2253-61
MeSH Terms: Adenosine Triphosphatases, Chromatin Immunoprecipitation, Conserved Sequence, DNA-Binding Proteins, Gene Expression Regulation, Fungal, Genome, Fungal, Microarray Analysis, Mutation, Open Reading Frames, Promoter Regions, Genetic, Protein Structure, Tertiary, Saccharomyces cerevisiae, Saccharomyces cerevisiae Proteins, Sequence Deletion, TATA-Binding Protein Associated Factors, TATA-Box Binding Protein
Added March 5, 2014
0 Communities
1 Members
0 Resources
16 MeSH Terms
Control of copper resistance and inorganic sulfur metabolism by paralogous regulators in Staphylococcus aureus.
Grossoehme N, Kehl-Fie TE, Ma Z, Adams KW, Cowart DM, Scott RA, Skaar EP, Giedroc DP
(2011) J Biol Chem 286: 13522-31
MeSH Terms: Bacterial Proteins, Copper, Drug Resistance, Bacterial, Open Reading Frames, Operon, Repressor Proteins, Staphylococcus aureus, Sulfur
Added February 11, 2016
0 Communities
1 Members
0 Resources
8 MeSH Terms