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The publication data currently available has been vetted by Vanderbilt faculty, staff, administrators and trainees. The data itself is retrieved directly from NCBI's PubMed and is automatically updated on a weekly basis to ensure accuracy and completeness.

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Results: 1 to 10 of 28

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Gene network transitions in embryos depend upon interactions between a pioneer transcription factor and core histones.
Iwafuchi M, Cuesta I, Donahue G, Takenaka N, Osipovich AB, Magnuson MA, Roder H, Seeholzer SH, Santisteban P, Zaret KS
(2020) Nat Genet 52: 418-427
MeSH Terms: Amino Acid Sequence, Animals, Cell Line, Chromatin, DNA, Female, Gene Expression Regulation, Developmental, Gene Regulatory Networks, Histones, Humans, Mice, Mice, Inbred C57BL, Nucleosomes, Transcription Factors, Transcription, Genetic
Added April 7, 2020
1 Communities
3 Members
0 Resources
15 MeSH Terms
Impact of Pdx1-associated chromatin modifiers on islet β-cells.
Spaeth JM, Walker EM, Stein R
(2016) Diabetes Obes Metab 18 Suppl 1: 123-7
MeSH Terms: Animals, Chromatin Assembly and Disassembly, DNA Methylation, Diabetes Mellitus, Type 2, Gene Expression Regulation, Histone Code, Homeodomain Proteins, Humans, Insulin-Secreting Cells, Mice, Nucleosomes, Trans-Activators
Added September 19, 2016
0 Communities
1 Members
0 Resources
12 MeSH Terms
Predicting near-UV electronic circular dichroism in nucleosomal DNA by means of DFT response theory.
Norman P, Parello J, Polavarapu PL, Linares M
(2015) Phys Chem Chem Phys 17: 21866-79
MeSH Terms: Base Pairing, Circular Dichroism, DNA, B-Form, Electrons, Models, Molecular, Nucleosides, Nucleosomes, Quantum Theory, Spectrophotometry, Ultraviolet, Thermodynamics
Added April 10, 2018
0 Communities
1 Members
0 Resources
MeSH Terms
Stable histone adduction by 4-oxo-2-nonenal: a potential link between oxidative stress and epigenetics.
Galligan JJ, Rose KL, Beavers WN, Hill S, Tallman KA, Tansey WP, Marnett LJ
(2014) J Am Chem Soc 136: 11864-6
MeSH Terms: Acylation, Aldehydes, Binding Sites, Cell Line, Tumor, DNA Adducts, Epigenesis, Genetic, Histones, Humans, Lysine, Models, Molecular, Nucleosomes, Oxidative Stress, Protein Processing, Post-Translational
Added February 12, 2015
0 Communities
2 Members
0 Resources
13 MeSH Terms
Identification of functional elements and regulatory circuits by Drosophila modENCODE.
modENCODE Consortium, Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, Eaton ML, Landolin JM, Bristow CA, Ma L, Lin MF, Washietl S, Arshinoff BI, Ay F, Meyer PE, Robine N, Washington NL, Di Stefano L, Berezikov E, Brown CD, Candeias R, Carlson JW, Carr A, Jungreis I, Marbach D, Sealfon R, Tolstorukov MY, Will S, Alekseyenko AA, Artieri C, Booth BW, Brooks AN, Dai Q, Davis CA, Duff MO, Feng X, Gorchakov AA, Gu T, Henikoff JG, Kapranov P, Li R, MacAlpine HK, Malone J, Minoda A, Nordman J, Okamura K, Perry M, Powell SK, Riddle NC, Sakai A, Samsonova A, Sandler JE, Schwartz YB, Sher N, Spokony R, Sturgill D, van Baren M, Wan KH, Yang L, Yu C, Feingold E, Good P, Guyer M, Lowdon R, Ahmad K, Andrews J, Berger B, Brenner SE, Brent MR, Cherbas L, Elgin SC, Gingeras TR, Grossman R, Hoskins RA, Kaufman TC, Kent W, Kuroda MI, Orr-Weaver T, Perrimon N, Pirrotta V, Posakony JW, Ren B, Russell S, Cherbas P, Graveley BR, Lewis S, Micklem G, Oliver B, Park PJ, Celniker SE, Henikoff S, Karpen GH, Lai EC, MacAlpine DM, Stein LD, White KP, Kellis M
(2010) Science 330: 1787-97
MeSH Terms: Animals, Binding Sites, Chromatin, Computational Biology, Drosophila Proteins, Drosophila melanogaster, Epigenesis, Genetic, Gene Expression Regulation, Gene Regulatory Networks, Genes, Insect, Genome, Insect, Genomics, Histones, Molecular Sequence Annotation, Nucleosomes, Promoter Regions, Genetic, RNA, Small Untranslated, Transcription Factors, Transcription, Genetic
Added March 3, 2020
0 Communities
1 Members
0 Resources
MeSH Terms
The JmjN domain of Jhd2 is important for its protein stability, and the plant homeodomain (PHD) finger mediates its chromatin association independent of H3K4 methylation.
Huang F, Chandrasekharan MB, Chen YC, Bhaskara S, Hiebert SW, Sun ZW
(2010) J Biol Chem 285: 24548-61
MeSH Terms: Catalytic Domain, Chromatin, HeLa Cells, Histones, Humans, Jumonji Domain-Containing Histone Demethylases, Methylation, Mutation, Nucleosomes, Protein Binding, Protein Structure, Tertiary, Saccharomyces cerevisiae, Saccharomyces cerevisiae Proteins, Subcellular Fractions
Added March 7, 2014
1 Communities
2 Members
0 Resources
14 MeSH Terms
Ubiquitination of histone H2B regulates chromatin dynamics by enhancing nucleosome stability.
Chandrasekharan MB, Huang F, Sun ZW
(2009) Proc Natl Acad Sci U S A 106: 16686-91
MeSH Terms: Chromatin, Histones, Methylation, Nucleosomes, Saccharomyces cerevisiae, Saccharomyces cerevisiae Proteins, Ubiquitination
Added March 7, 2014
0 Communities
1 Members
0 Resources
7 MeSH Terms
How eukaryotic genes are transcribed.
Venters BJ, Pugh BF
(2009) Crit Rev Biochem Mol Biol 44: 117-41
MeSH Terms: Animals, Chromatin Assembly and Disassembly, Gene Expression Regulation, Humans, Nucleosomes, RNA Polymerase II, Transcription, Genetic
Added March 5, 2014
0 Communities
1 Members
0 Resources
7 MeSH Terms
A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome.
Venters BJ, Pugh BF
(2009) Genome Res 19: 360-71
MeSH Terms: Base Sequence, Binding Sites, Chromosome Mapping, DNA Polymerase II, Genome, Fungal, Models, Biological, Nucleosomes, Promoter Regions, Genetic, RNA, Antisense, Saccharomyces cerevisiae, TATA-Box Binding Protein, Transcription Factor TFIIB, Transcription Factors, Transcription, Genetic, Transcriptional Activation
Added March 5, 2014
0 Communities
1 Members
0 Resources
15 MeSH Terms
A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome.
Mavrich TN, Ioshikhes IP, Venters BJ, Jiang C, Tomsho LP, Qi J, Schuster SC, Albert I, Pugh BF
(2008) Genome Res 18: 1073-83
MeSH Terms: 3' Untranslated Regions, Chromosome Mapping, Chromosomes, Fungal, DNA, Fungal, Genome, Fungal, Models, Genetic, Nucleosomes, Promoter Regions, Genetic, Saccharomyces cerevisiae
Added March 5, 2014
0 Communities
1 Members
0 Resources
9 MeSH Terms