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The publication data currently available has been vetted by Vanderbilt faculty, staff, administrators and trainees. The data itself is retrieved directly from NCBI's PubMed and is automatically updated on a weekly basis to ensure accuracy and completeness.

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Results: 1 to 10 of 193

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Movement of the RecG Motor Domain upon DNA Binding Is Required for Efficient Fork Reversal.
Warren GM, Stein RA, Mchaourab HS, Eichman BF
(2018) Int J Mol Sci 19:
MeSH Terms: DNA, DNA Helicases, DNA Replication, DNA-Binding Proteins, Models, Molecular, Molecular Conformation, Mutation, Nucleic Acid Conformation, Protein Binding, Protein Interaction Domains and Motifs, Structure-Activity Relationship
Added August 26, 2019
0 Communities
1 Members
0 Resources
MeSH Terms
Quelling an innate response to dsRNA.
Ogden KM, Prasad BV
(2015) Oncotarget 6: 28535-6
MeSH Terms: 2',5'-Oligoadenylate Synthetase, Animals, Antiviral Agents, Endoribonucleases, Evolution, Molecular, Exoribonucleases, Gene Expression Regulation, Viral, Host-Pathogen Interactions, Humans, Immunity, Innate, Molecular Targeted Therapy, Nucleic Acid Conformation, Phosphodiesterase Inhibitors, RNA, Double-Stranded, RNA, Viral, Signal Transduction, Viral Proteins, Viruses
Added April 26, 2017
0 Communities
1 Members
0 Resources
18 MeSH Terms
Facilitated diffusion framework for transcription factor search with conformational changes.
Cartailler J, Reingruber J
(2015) Phys Biol 12: 046012
MeSH Terms: DNA, DNA, Bacterial, Escherichia coli, Facilitated Diffusion, Lac Repressors, Models, Genetic, Nucleic Acid Conformation, Promoter Regions, Genetic, Protein Conformation, Transcription Factors
Added May 16, 2017
1 Communities
0 Members
0 Resources
10 MeSH Terms
Base-Displaced Intercalated Conformation of the 2-Amino-3-methylimidazo[4,5-f]quinoline N(2)-dG DNA Adduct Positioned at the Nonreiterated G(1) in the NarI Restriction Site.
Stavros KM, Hawkins EK, Rizzo CJ, Stone MP
(2015) Chem Res Toxicol 28: 1455-68
MeSH Terms: Circular Dichroism, DNA, Deoxyguanosine, Deoxyribonucleases, Type II Site-Specific, Intercalating Agents, Magnetic Resonance Spectroscopy, Molecular Conformation, Nucleic Acid Conformation, Protons, Quinolines, Spectrophotometry, Ultraviolet
Added January 7, 2016
0 Communities
1 Members
0 Resources
11 MeSH Terms
HLTF's Ancient HIRAN Domain Binds 3' DNA Ends to Drive Replication Fork Reversal.
Kile AC, Chavez DA, Bacal J, Eldirany S, Korzhnev DM, Bezsonova I, Eichman BF, Cimprich KA
(2015) Mol Cell 58: 1090-100
MeSH Terms: Amino Acid Sequence, Base Sequence, Binding Sites, Blotting, Western, Cell Line, Tumor, Crystallography, X-Ray, DNA, DNA Replication, DNA, Single-Stranded, DNA-Binding Proteins, Humans, Magnetic Resonance Spectroscopy, Models, Genetic, Models, Molecular, Molecular Sequence Data, Mutation, Nucleic Acid Conformation, Protein Binding, Protein Structure, Tertiary, RNA Interference, Sequence Homology, Amino Acid, Sequence Homology, Nucleic Acid, Transcription Factors
Added November 10, 2015
1 Communities
1 Members
0 Resources
23 MeSH Terms
Personalized biochemistry and biophysics.
Kroncke BM, Vanoye CG, Meiler J, George AL, Sanders CR
(2015) Biochemistry 54: 2551-9
MeSH Terms: Biochemistry, Biophysics, Genetic Linkage, Genetic Predisposition to Disease, Genetic Variation, Genome, Human, Humans, Nucleic Acid Conformation, Precision Medicine, Protein Conformation, RNA
Added February 5, 2016
1 Communities
4 Members
0 Resources
11 MeSH Terms
Major groove orientation of the (2S)-N(6)-(2-hydroxy-3-buten-1-yl)-2'-deoxyadenosine DNA adduct induced by 1,2-epoxy-3-butene.
Kowal EA, Wickramaratne S, Kotapati S, Turo M, Tretyakova N, Stone MP
(2014) Chem Res Toxicol 27: 1675-86
MeSH Terms: Alkylation, Butadienes, DNA, DNA Adducts, Deoxyadenosines, Epoxy Compounds, Humans, Molecular Dynamics Simulation, Nuclear Magnetic Resonance, Biomolecular, Nucleic Acid Conformation, Nucleic Acid Denaturation, Oligodeoxyribonucleotides, Stereoisomerism, Transition Temperature, ras Proteins
Added January 20, 2015
0 Communities
1 Members
0 Resources
15 MeSH Terms
Amides are excellent mimics of phosphate internucleoside linkages and are well tolerated in short interfering RNAs.
Mutisya D, Selvam C, Lunstad BD, Pallan PS, Haas A, Leake D, Egli M, Rozners E
(2014) Nucleic Acids Res 42: 6542-51
MeSH Terms: Amides, HeLa Cells, Humans, Models, Molecular, Nucleic Acid Conformation, Phosphates, RNA Interference, RNA, Small Interfering
Added May 27, 2014
0 Communities
1 Members
0 Resources
8 MeSH Terms
Looking for Waldo: a potential thermodynamic signature to DNA damage.
Gold B, Stone MP, Marky LA
(2014) Acc Chem Res 47: 1446-54
MeSH Terms: Base Pairing, Binding Sites, DNA, DNA Damage, DNA Glycosylases, DNA Repair, Kinetics, Nucleic Acid Conformation, Thermodynamics, Water
Added May 29, 2014
0 Communities
1 Members
0 Resources
10 MeSH Terms
Base-displaced intercalation of the 2-amino-3-methylimidazo[4,5-f]quinolone N2-dG adduct in the NarI DNA recognition sequence.
Stavros KM, Hawkins EK, Rizzo CJ, Stone MP
(2014) Nucleic Acids Res 42: 3450-63
MeSH Terms: Aminoquinolines, Base Sequence, Benzimidazoles, DNA, DNA Adducts, Deoxyribonucleases, Type II Site-Specific, Models, Molecular, Nuclear Magnetic Resonance, Biomolecular, Nucleic Acid Conformation, Oligodeoxyribonucleotides, Protons
Added March 10, 2014
0 Communities
2 Members
0 Resources
11 MeSH Terms