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The publication data currently available has been vetted by Vanderbilt faculty, staff, administrators and trainees. The data itself is retrieved directly from NCBI's PubMed and is automatically updated on a weekly basis to ensure accuracy and completeness.

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Results: 1 to 10 of 231

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Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples.
Bailey MH, Meyerson WU, Dursi LJ, Wang LB, Dong G, Liang WW, Weerasinghe A, Li S, Li Y, Kelso S, MC3 Working Group, PCAWG novel somatic mutation calling methods working group, Saksena G, Ellrott K, Wendl MC, Wheeler DA, Getz G, Simpson JT, Gerstein MB, Ding L, PCAWG Consortium
(2020) Nat Commun 11: 4748
MeSH Terms: Base Composition, DNA, Intergenic, Databases, Genetic, Exome, Exons, Genome, Human, Humans, Mutation, Neoplasms, Retrospective Studies, Whole Exome Sequencing, Whole Genome Sequencing
Added April 27, 2021
0 Communities
1 Members
0 Resources
MeSH Terms
A vast resource of allelic expression data spanning human tissues.
Castel SE, Aguet F, Mohammadi P, GTEx Consortium, Ardlie KG, Lappalainen T
(2020) Genome Biol 21: 234
MeSH Terms: Alleles, Gene Expression, Genome, Human, Haplotypes, Humans, Polymorphism, Single Nucleotide, Sequence Analysis, RNA
Added September 15, 2020
0 Communities
1 Members
0 Resources
7 MeSH Terms
Quantitative Analysis of Adenosine-to-Inosine RNA Editing.
Malik TN, Cartailler JP, Emeson RB
(2021) Methods Mol Biol 2181: 97-111
MeSH Terms: Adenosine, DNA, Complementary, Genome, Human, High-Throughput Nucleotide Sequencing, Humans, Inosine, RNA Editing, Transcriptome
Added October 29, 2020
0 Communities
1 Members
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8 MeSH Terms
Inferred divergent gene regulation in archaic hominins reveals potential phenotypic differences.
Colbran LL, Gamazon ER, Zhou D, Evans P, Cox NJ, Capra JA
(2019) Nat Ecol Evol 3: 1598-1606
MeSH Terms: Animals, Female, Genome, Human, Haplotypes, Hominidae, Humans, Neanderthals, Phenotype
Added October 12, 2019
0 Communities
2 Members
0 Resources
8 MeSH Terms
Building evidence and measuring clinical outcomes for genomic medicine.
Peterson JF, Roden DM, Orlando LA, Ramirez AH, Mensah GA, Williams MS
(2019) Lancet 394: 604-610
MeSH Terms: Diagnostic Tests, Routine, Genome, Human, Genomics, High-Throughput Nucleotide Sequencing, Humans, Patient Outcome Assessment, Precision Medicine, Standard of Care
Added March 24, 2020
0 Communities
1 Members
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MeSH Terms
Empowering genomic medicine by establishing critical sequencing result data flows: the eMERGE example.
Aronson S, Babb L, Ames D, Gibbs RA, Venner E, Connelly JJ, Marsolo K, Weng C, Williams MS, Hartzler AL, Liang WH, Ralston JD, Devine EB, Murphy S, Chute CG, Caraballo PJ, Kullo IJ, Freimuth RR, Rasmussen LV, Wehbe FH, Peterson JF, Robinson JR, Wiley K, Overby Taylor C, eMERGE Network EHRI Working Group
(2018) J Am Med Inform Assoc 25: 1375-1381
MeSH Terms: Computer Communication Networks, Electronic Health Records, Genetic Testing, Genome, Human, Genomics, Humans, Information Dissemination, Sequence Analysis, DNA, United States
Added June 27, 2018
0 Communities
1 Members
0 Resources
9 MeSH Terms
The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma.
Ricketts CJ, De Cubas AA, Fan H, Smith CC, Lang M, Reznik E, Bowlby R, Gibb EA, Akbani R, Beroukhim R, Bottaro DP, Choueiri TK, Gibbs RA, Godwin AK, Haake S, Hakimi AA, Henske EP, Hsieh JJ, Ho TH, Kanchi RS, Krishnan B, Kwiatkowski DJ, Lui W, Merino MJ, Mills GB, Myers J, Nickerson ML, Reuter VE, Schmidt LS, Shelley CS, Shen H, Shuch B, Signoretti S, Srinivasan R, Tamboli P, Thomas G, Vincent BG, Vocke CD, Wheeler DA, Yang L, Kim WY, Robertson AG, Cancer Genome Atlas Research Network, Spellman PT, Rathmell WK, Linehan WM
(2018) Cell Rep 23: 313-326.e5
MeSH Terms: Biomarkers, Tumor, Carcinoma, Renal Cell, Cyclin-Dependent Kinase Inhibitor p16, DNA-Binding Proteins, Genome, Human, Humans, Kidney Neoplasms, Metabolic Networks and Pathways, Nuclear Proteins, PTEN Phosphohydrolase, Phenotype, Survival Analysis, Transcription Factors, Tumor Suppressor Proteins, Ubiquitin Thiolesterase
Added October 30, 2019
0 Communities
2 Members
0 Resources
15 MeSH Terms
Genomic and Molecular Landscape of DNA Damage Repair Deficiency across The Cancer Genome Atlas.
Knijnenburg TA, Wang L, Zimmermann MT, Chambwe N, Gao GF, Cherniack AD, Fan H, Shen H, Way GP, Greene CS, Liu Y, Akbani R, Feng B, Donehower LA, Miller C, Shen Y, Karimi M, Chen H, Kim P, Jia P, Shinbrot E, Zhang S, Liu J, Hu H, Bailey MH, Yau C, Wolf D, Zhao Z, Weinstein JN, Li L, Ding L, Mills GB, Laird PW, Wheeler DA, Shmulevich I, Cancer Genome Atlas Research Network, Monnat RJ, Xiao Y, Wang C
(2018) Cell Rep 23: 239-254.e6
MeSH Terms: Cell Line, Tumor, DNA Damage, Gene Silencing, Genome, Human, Humans, Loss of Heterozygosity, Machine Learning, Mutation, Neoplasms, Recombinational DNA Repair, Tumor Suppressor Proteins
Added October 30, 2019
0 Communities
1 Members
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MeSH Terms
Integrated Genomic Analysis of the Ubiquitin Pathway across Cancer Types.
Ge Z, Leighton JS, Wang Y, Peng X, Chen Z, Chen H, Sun Y, Yao F, Li J, Zhang H, Liu J, Shriver CD, Hu H, Cancer Genome Atlas Research Network, Piwnica-Worms H, Ma L, Liang H
(2018) Cell Rep 23: 213-226.e3
MeSH Terms: Cell Line, Tumor, Gene Expression Regulation, Neoplastic, Genome, Human, Genomics, Humans, Metabolic Networks and Pathways, Neoplasms, Oncogene Proteins, Ubiquitination
Added October 30, 2019
0 Communities
1 Members
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MeSH Terms
Machine Learning Detects Pan-cancer Ras Pathway Activation in The Cancer Genome Atlas.
Way GP, Sanchez-Vega F, La K, Armenia J, Chatila WK, Luna A, Sander C, Cherniack AD, Mina M, Ciriello G, Schultz N, Cancer Genome Atlas Research Network, Sanchez Y, Greene CS
(2018) Cell Rep 23: 172-180.e3
MeSH Terms: Cell Line, Tumor, Gene Expression Regulation, Neoplastic, Genome, Human, Humans, Machine Learning, Neoplasms, Signal Transduction, ras Proteins
Added October 30, 2019
0 Communities
1 Members
0 Resources
MeSH Terms