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The publication data currently available has been vetted by Vanderbilt faculty, staff, administrators and trainees. The data itself is retrieved directly from NCBI's PubMed and is automatically updated on a weekly basis to ensure accuracy and completeness.

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Results: 1 to 10 of 21

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Dynamic Evolution of Nitric Oxide Detoxifying Flavohemoglobins, a Family of Single-Protein Metabolic Modules in Bacteria and Eukaryotes.
Wisecaver JH, Alexander WG, King SB, Hittinger CT, Rokas A
(2016) Mol Biol Evol 33: 1979-87
MeSH Terms: Adaptation, Biological, Amino Acid Sequence, Bacteria, Bacterial Proteins, Biological Evolution, Computational Biology, Databases, Nucleic Acid, Dihydropteridine Reductase, Escherichia coli Proteins, Eukaryota, Evolution, Molecular, Fungi, Gene Duplication, Gene Transfer, Horizontal, Hemeproteins, NADH, NADPH Oxidoreductases, Nitric Oxide, Phylogeny
Added April 6, 2017
0 Communities
1 Members
0 Resources
18 MeSH Terms
Horizontally acquired genes in early-diverging pathogenic fungi enable the use of host nucleosides and nucleotides.
Alexander WG, Wisecaver JH, Rokas A, Hittinger CT
(2016) Proc Natl Acad Sci U S A 113: 4116-21
MeSH Terms: Fungi, Gene Transfer, Horizontal, Genes, Fungal, Host-Pathogen Interactions, Nucleosides, Nucleotides, Phylogeny
Added April 6, 2017
0 Communities
1 Members
0 Resources
7 MeSH Terms
Evolution of a Heavy Metal Homeostasis/Resistance Island Reflects Increasing Copper Stress in Enterobacteria.
Staehlin BM, Gibbons JG, Rokas A, O'Halloran TV, Slot JC
(2016) Genome Biol Evol 8: 811-26
MeSH Terms: Chromosomes, Bacterial, Copper, Enterobacteriaceae, Gene Transfer, Horizontal, Homeostasis, Humans, Metals, Heavy, Phylogeny, Plasmids, Shewanella
Added February 22, 2016
0 Communities
1 Members
0 Resources
10 MeSH Terms
Clustering of two genes putatively involved in cyanate detoxification evolved recently and independently in multiple fungal lineages.
Elmore MH, McGary KL, Wisecaver JH, Slot JC, Geiser DM, Sink S, O'Donnell K, Rokas A
(2015) Genome Biol Evol 7: 789-800
MeSH Terms: Ascomycota, Carbon-Nitrogen Lyases, Carbonic Anhydrases, Cyanates, Evolution, Molecular, Fusarium, Gene Duplication, Gene Transfer, Horizontal, Genes, Fungal, Multigene Family, Phylogeny
Added February 19, 2015
0 Communities
2 Members
0 Resources
11 MeSH Terms
The evolution of fungal metabolic pathways.
Wisecaver JH, Slot JC, Rokas A
(2014) PLoS Genet 10: e1004816
MeSH Terms: Ascomycota, Evolution, Molecular, Gene Duplication, Gene Regulatory Networks, Gene Transfer, Horizontal, Genes, Fungal, Genome, Fungal, Metabolic Networks and Pathways, Multigene Family, Phylogeny
Added February 19, 2015
0 Communities
1 Members
0 Resources
10 MeSH Terms
Antibacterial gene transfer across the tree of life.
Metcalf JA, Funkhouser-Jones LJ, Brileya K, Reysenbach AL, Bordenstein SR
(2014) Elife 3:
MeSH Terms: Amino Acid Sequence, Anti-Bacterial Agents, Archaea, Bacteria, Coculture Techniques, Escherichia coli, Gene Transfer, Horizontal, Genes, Bacterial, Microbial Viability, Models, Molecular, Molecular Sequence Data, Muramidase, Phylogeny, RNA, Ribosomal
Added October 8, 2015
0 Communities
1 Members
0 Resources
14 MeSH Terms
Ecology drives the distribution of specialized tyrosine metabolism modules in fungi.
Greene GH, McGary KL, Rokas A, Slot JC
(2014) Genome Biol Evol 6: 121-32
MeSH Terms: Ascomycota, Ecosystem, Evolution, Molecular, Gene Transfer, Horizontal, Genes, Fungal, Gentisates, Multigene Family, Stilbenes, Tyrosine
Added May 30, 2014
0 Communities
1 Members
0 Resources
9 MeSH Terms
Repeated loss of an anciently horizontally transferred gene cluster in Botrytis.
Campbell MA, Staats M, van Kan JA, Rokas A, Slot JC
(2013) Mycologia 105: 1126-34
MeSH Terms: Botrytis, Evolution, Molecular, Fusarium, Gene Transfer, Horizontal, Genome, Fungal, Models, Biological, Multigene Family, Phylogeny, Pseudogenes, RNA, Fungal, RNA, Messenger, Species Specificity, Xanthones
Added May 30, 2014
0 Communities
1 Members
0 Resources
13 MeSH Terms
The ASP3 locus in Saccharomyces cerevisiae originated by horizontal gene transfer from Wickerhamomyces.
League GP, Slot JC, Rokas A
(2012) FEMS Yeast Res 12: 859-63
MeSH Terms: Adaptation, Biological, Asparaginase, Asparagine, Cluster Analysis, Evolution, Molecular, Gene Dosage, Gene Transfer, Horizontal, Metabolic Networks and Pathways, Multigene Family, Phylogeny, Saccharomycetales
Added May 30, 2014
0 Communities
1 Members
0 Resources
11 MeSH Terms
Azospirillum genomes reveal transition of bacteria from aquatic to terrestrial environments.
Wisniewski-Dyé F, Borziak K, Khalsa-Moyers G, Alexandre G, Sukharnikov LO, Wuichet K, Hurst GB, McDonald WH, Robertson JS, Barbe V, Calteau A, Rouy Z, Mangenot S, Prigent-Combaret C, Normand P, Boyer M, Siguier P, Dessaux Y, Elmerich C, Condemine G, Krishnen G, Kennedy I, Paterson AH, González V, Mavingui P, Zhulin IB
(2011) PLoS Genet 7: e1002430
MeSH Terms: Aquatic Organisms, Azospirillum, Base Sequence, Biological Evolution, Ecosystem, Gene Transfer, Horizontal, Genes, Essential, Genome, Bacterial, Glycoside Hydrolases, Phylogeny, Plant Roots, RNA, Ribosomal, 16S, Rhodospirillaceae
Added March 20, 2014
0 Communities
1 Members
0 Resources
13 MeSH Terms