Other search tools

About this data

The publication data currently available has been vetted by Vanderbilt faculty, staff, administrators and trainees. The data itself is retrieved directly from NCBI's PubMed and is automatically updated on a weekly basis to ensure accuracy and completeness.

If you have any questions or comments, please contact us.

Results: 1 to 10 of 43

Publication Record

Connections

Human DNA polymerase η accommodates RNA for strand extension.
Su Y, Egli M, Guengerich FP
(2017) J Biol Chem 292: 18044-18051
MeSH Terms: 8-Hydroxy-2'-Deoxyguanosine, Base Pair Mismatch, DNA Primers, DNA Replication, DNA-Directed DNA Polymerase, Deoxyguanosine, Electrophoretic Mobility Shift Assay, Humans, Kinetics, Nucleic Acid Heteroduplexes, Nucleic Acid Hybridization, Oligodeoxyribonucleotides, Oligoribonucleotides, Pyrimidine Dimers, RNA, Recombinant Proteins, Reverse Transcription, Substrate Specificity, Transcription Elongation, Genetic
Added March 14, 2018
0 Communities
1 Members
0 Resources
19 MeSH Terms
Detection of RNA-Protein Interactions Using Tethered RNA Affinity Capture.
Iioka H, Macara IG
(2015) Methods Mol Biol 1316: 67-73
MeSH Terms: Electrophoretic Mobility Shift Assay, Protein Binding, RNA, RNA-Binding Proteins
Added April 10, 2018
0 Communities
1 Members
0 Resources
MeSH Terms
High-affinity DNA-binding domains of replication protein A (RPA) direct SMARCAL1-dependent replication fork remodeling.
Bhat KP, Bétous R, Cortez D
(2015) J Biol Chem 290: 4110-7
MeSH Terms: Amino Acid Motifs, Bone Neoplasms, DNA Damage, DNA Helicases, DNA Replication, DNA, Single-Stranded, Electrophoretic Mobility Shift Assay, Humans, Osteosarcoma, Protein Binding, Replication Protein A, Substrate Specificity, Tumor Cells, Cultured
Added January 20, 2015
0 Communities
1 Members
0 Resources
13 MeSH Terms
Discovery of a potent stapled helix peptide that binds to the 70N domain of replication protein A.
Frank AO, Vangamudi B, Feldkamp MD, Souza-Fagundes EM, Luzwick JW, Cortez D, Olejniczak ET, Waterson AG, Rossanese OW, Chazin WJ, Fesik SW
(2014) J Med Chem 57: 2455-61
MeSH Terms: Alanine, Amino Acid Sequence, Cell Line, Crystallization, Crystallography, X-Ray, DNA, Single-Stranded, Drug Discovery, Electrophoretic Mobility Shift Assay, Fluorescence Polarization, Magnetic Resonance Spectroscopy, Microscopy, Fluorescence, Models, Molecular, Molecular Sequence Data, Penetrance, Peptides, Protein Conformation, Replication Protein A, Structure-Activity Relationship, Tumor Suppressor Protein p53
Added March 11, 2014
0 Communities
4 Members
0 Resources
19 MeSH Terms
Nrf1 and Nrf2 transcription factors regulate androgen receptor transactivation in prostate cancer cells.
Schultz MA, Hagan SS, Datta A, Zhang Y, Freeman ML, Sikka SC, Abdel-Mageed AB, Mondal D
(2014) PLoS One 9: e87204
MeSH Terms: Analysis of Variance, Cell Line, Tumor, Chromatin Immunoprecipitation, DNA Primers, Dihydrotestosterone, Electrophoretic Mobility Shift Assay, Humans, Immunoblotting, Luciferases, Male, NF-E2-Related Factor 2, Nuclear Respiratory Factor 1, Prostatic Neoplasms, Castration-Resistant, Real-Time Polymerase Chain Reaction, Receptors, Androgen, Transcriptional Activation
Added March 13, 2014
0 Communities
1 Members
0 Resources
16 MeSH Terms
Phosphorylation-dependent derepression by the response regulator HnoC in the Shewanella oneidensis nitric oxide signaling network.
Plate L, Marletta MA
(2013) Proc Natl Acad Sci U S A 110: E4648-57
MeSH Terms: Bacterial Proteins, Biofilms, DNA Footprinting, Electrophoretic Mobility Shift Assay, Microarray Analysis, Models, Biological, Nitric Oxide, Phosphorylation, Regulatory Elements, Transcriptional, Shewanella, Signal Transduction
Added March 3, 2020
0 Communities
1 Members
0 Resources
MeSH Terms
Strong cross-system interactions drive the activation of the QseB response regulator in the absence of its cognate sensor.
Guckes KR, Kostakioti M, Breland EJ, Gu AP, Shaffer CL, Martinez CR, Hultgren SJ, Hadjifrangiskou M
(2013) Proc Natl Acad Sci U S A 110: 16592-7
MeSH Terms: Bacterial Proteins, DNA Primers, DNA Transposable Elements, Electrophoretic Mobility Shift Assay, Escherichia coli, Escherichia coli Proteins, Gene Expression Regulation, Bacterial, Immunoblotting, Mutagenesis, Quorum Sensing, Real-Time Polymerase Chain Reaction, Receptor Cross-Talk, Signal Transduction
Added August 6, 2014
0 Communities
1 Members
0 Resources
13 MeSH Terms
Requirement for Rictor in homeostasis and function of mature B lymphoid cells.
Lee K, Heffington L, Jellusova J, Nam KT, Raybuck A, Cho SH, Thomas JW, Rickert RC, Boothby M
(2013) Blood 122: 2369-79
MeSH Terms: Adoptive Transfer, Animals, B-Lymphocytes, Blotting, Western, Carrier Proteins, Cell Differentiation, Cell Proliferation, Cell Survival, Electrophoretic Mobility Shift Assay, Enzyme-Linked Immunosorbent Assay, Flow Cytometry, Homeostasis, Immunohistochemistry, Mice, Mice, Inbred C57BL, Rapamycin-Insensitive Companion of mTOR Protein, Signal Transduction, TOR Serine-Threonine Kinases
Added November 6, 2013
2 Communities
1 Members
0 Resources
18 MeSH Terms
A common functional promoter variant links CNR1 gene expression to HDL cholesterol level.
Feng Q, Vickers KC, Anderson MP, Levin MG, Chen W, Harrison DG, Wilke RA
(2013) Nat Commun 4: 1973
MeSH Terms: Cholesterol, HDL, Chromosomes, Human, Cohort Studies, DNA, Demography, Electrophoretic Mobility Shift Assay, Gene Expression Regulation, Genes, Reporter, Haplotypes, Homozygote, Humans, Middle Aged, Molecular Sequence Data, Polymorphism, Single Nucleotide, Promoter Regions, Genetic, Protein Binding, Receptor, Cannabinoid, CB1, Sequence Analysis, DNA
Added February 12, 2015
1 Communities
2 Members
0 Resources
18 MeSH Terms
Functional variants at the 11q13 risk locus for breast cancer regulate cyclin D1 expression through long-range enhancers.
French JD, Ghoussaini M, Edwards SL, Meyer KB, Michailidou K, Ahmed S, Khan S, Maranian MJ, O'Reilly M, Hillman KM, Betts JA, Carroll T, Bailey PJ, Dicks E, Beesley J, Tyrer J, Maia AT, Beck A, Knoblauch NW, Chen C, Kraft P, Barnes D, González-Neira A, Alonso MR, Herrero D, Tessier DC, Vincent D, Bacot F, Luccarini C, Baynes C, Conroy D, Dennis J, Bolla MK, Wang Q, Hopper JL, Southey MC, Schmidt MK, Broeks A, Verhoef S, Cornelissen S, Muir K, Lophatananon A, Stewart-Brown S, Siriwanarangsan P, Fasching PA, Loehberg CR, Ekici AB, Beckmann MW, Peto J, dos Santos Silva I, Johnson N, Aitken Z, Sawyer EJ, Tomlinson I, Kerin MJ, Miller N, Marme F, Schneeweiss A, Sohn C, Burwinkel B, Guénel P, Truong T, Laurent-Puig P, Menegaux F, Bojesen SE, Nordestgaard BG, Nielsen SF, Flyger H, Milne RL, Zamora MP, Arias Perez JI, Benitez J, Anton-Culver H, Brenner H, Müller H, Arndt V, Stegmaier C, Meindl A, Lichtner P, Schmutzler RK, Engel C, Brauch H, Hamann U, Justenhoven C, GENICA Network, Aaltonen K, Heikkilä P, Aittomäki K, Blomqvist C, Matsuo K, Ito H, Iwata H, Sueta A, Bogdanova NV, Antonenkova NN, Dörk T, Lindblom A, Margolin S, Mannermaa A, Kataja V, Kosma VM, Hartikainen JM, kConFab Investigators, Wu AH, Tseng CC, Van Den Berg D, Stram DO, Lambrechts D, Peeters S, Smeets A, Floris G, Chang-Claude J, Rudolph A, Nickels S, Flesch-Janys D, Radice P, Peterlongo P, Bonanni B, Sardella D, Couch FJ, Wang X, Pankratz VS, Lee A, Giles GG, Severi G, Baglietto L, Haiman CA, Henderson BE, Schumacher F, Le Marchand L, Simard J, Goldberg MS, Labrèche F, Dumont M, Teo SH, Yip CH, Ng CH, Vithana EN, Kristensen V, Zheng W, Deming-Halverson S, Shrubsole M, Long J, Winqvist R, Pylkäs K, Jukkola-Vuorinen A, Grip M, Andrulis IL, Knight JA, Glendon G, Mulligan AM, Devilee P, Seynaeve C, García-Closas M, Figueroa J, Chanock SJ, Lissowska J, Czene K, Klevebring D, Schoof N, Hooning MJ, Martens JW, Collée JM, Tilanus-Linthorst M, Hall P, Li J, Liu J, Humphreys K, Shu XO, Lu W, Gao YT, Cai H, Cox A, Balasubramanian SP, Blot W, Signorello LB, Cai Q, Pharoah PD, Healey CS, Shah M, Pooley KA, Kang D, Yoo KY, Noh DY, Hartman M, Miao H, Sng JH, Sim X, Jakubowska A, Lubinski J, Jaworska-Bieniek K, Durda K, Sangrajrang S, Gaborieau V, McKay J, Toland AE, Ambrosone CB, Yannoukakos D, Godwin AK, Shen CY, Hsiung CN, Wu PE, Chen ST, Swerdlow A, Ashworth A, Orr N, Schoemaker MJ, Ponder BA, Nevanlinna H, Brown MA, Chenevix-Trench G, Easton DF, Dunning AM
(2013) Am J Hum Genet 92: 489-503
MeSH Terms: Binding Sites, Breast Neoplasms, Case-Control Studies, Cell Line, Tumor, Chromatin, Chromatin Immunoprecipitation, Chromosomes, Human, Pair 11, Cyclin D1, Electrophoretic Mobility Shift Assay, Enhancer Elements, Genetic, Female, GATA3 Transcription Factor, Gene Expression Regulation, Neoplastic, Humans, Luciferases, Polymorphism, Single Nucleotide, Promoter Regions, Genetic, RNA, Messenger, RNA, Small Interfering, Real-Time Polymerase Chain Reaction, Reverse Transcriptase Polymerase Chain Reaction, Silencer Elements, Transcriptional, ets-Domain Protein Elk-4
Added March 10, 2014
0 Communities
2 Members
0 Resources
23 MeSH Terms