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Results: 1 to 9 of 9

Publication Record


Seeing the forest through the trees: uncovering phenomic complexity through interactive network visualization.
Warner JL, Denny JC, Kreda DA, Alterovitz G
(2015) J Am Med Inform Assoc 22: 324-9
MeSH Terms: Audiovisual Aids, Data Display, Pattern Recognition, Automated, User-Computer Interface
Show Abstract · Added March 14, 2018
Our aim was to uncover unrecognized phenomic relationships using force-based network visualization methods, based on observed electronic medical record data. A primary phenotype was defined from actual patient profiles in the Multiparameter Intelligent Monitoring in Intensive Care II database. Network visualizations depicting primary relationships were compared to those incorporating secondary adjacencies. Interactivity was enabled through a phenotype visualization software concept: the Phenomics Advisor. Subendocardial infarction with cardiac arrest was demonstrated as a sample phenotype; there were 332 primarily adjacent diagnoses, with 5423 relationships. Primary network visualization suggested a treatment-related complication phenotype and several rare diagnoses; re-clustering by secondary relationships revealed an emergent cluster of smokers with the metabolic syndrome. Network visualization reveals phenotypic patterns that may have remained occult in pairwise correlation analysis. Visualization of complex data, potentially offered as point-of-care tools on mobile devices, may allow clinicians and researchers to quickly generate hypotheses and gain deeper understanding of patient subpopulations.
© The Author 2014. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For Permissions, please email: journals.permissions@oup.com.
0 Communities
1 Members
0 Resources
4 MeSH Terms
Automated near-real-time clinical performance feedback for anesthesiology residents: one piece of the milestones puzzle.
Ehrenfeld JM, McEvoy MD, Furman WR, Snyder D, Sandberg WS
(2014) Anesthesiology 120: 172-84
MeSH Terms: Anesthesiology, Automation, Clinical Competence, Computer Systems, Data Collection, Data Display, Electronic Health Records, Feedback, Humans, Internship and Residency, Job Satisfaction, Physicians, Quality Improvement
Show Abstract · Added October 17, 2015
BACKGROUND - Anesthesiology residencies are developing trainee assessment tools to evaluate 25 milestones that map to the six core competencies. The effort will be facilitated by development of automated methods to capture, assess, and report trainee performance to program directors, the Accreditation Council for Graduate Medical Education and the trainees themselves.
METHODS - The authors leveraged a perioperative information management system to develop an automated, near-real-time performance capture and feedback tool that provides objective data on clinical performance and requires minimal administrative effort. Before development, the authors surveyed trainees about satisfaction with clinical performance feedback and about preferences for future feedback.
RESULTS - Resident performance on 24,154 completed cases has been incorporated into the authors' automated dashboard, and trainees now have access to their own performance data. Eighty percent (48 of 60) of the residents responded to the feedback survey. Overall, residents "agreed/strongly agreed" that they desire frequent updates on their clinical performance on defined quality metrics and that they desired to see how they compared with the residency as a whole. Before deployment of the new tool, they "disagreed" that they were receiving feedback in a timely manner. Survey results were used to guide the format of the feedback tool that has been implemented.
CONCLUSION - The authors demonstrate the implementation of a system that provides near-real-time feedback concerning resident performance on an extensible series of quality metrics, and which is responsive to requests arising from resident feedback about desired reporting mechanisms.
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1 Members
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13 MeSH Terms
Insight into the sharing of medical images: physician, other health care providers, and staff experience in a variety of medical settings.
Sandberg JC, Ge Y, Nguyen HT, Arcury TA, Johnson AJ, Hwang W, Gage HD, Reynolds T, Carr JJ
(2012) Appl Clin Inform 3: 475-87
MeSH Terms: Cities, Compact Disks, Data Display, Electronic Health Records, Health Facilities, Information Dissemination, Physicians, Suburban Population
Show Abstract · Added February 28, 2014
BACKGROUND - Scant knowledge exists describing health care providers' and staffs' experiences sharing imaging studies. Additional research is needed to determine the extent to which imaging studies are shared in diverse health care settings, and the extent to which provider or practice characteristics are associated with barriers to viewing external imaging studies on portable media.
OBJECTIVE - This analysis uses qualitative data to 1) examine how providers and their staff accessed outside medical imaging studies, 2) examine whether use or the desire to use imaging studies conducted at outside facilities varied by provider specialty or location (urban, suburban, and small town) and 3) delineate difficulties experienced by providers or staff as they attempted to view and use imaging studies available on portable media.
METHODS - Semi-structured interviews were conducted with 85 health care providers and medical facility staff from urban, suburban, and small town medical practices in North Carolina and Virginia. The interviews were audio recorded, transcribed, then systematically analyzed using ATLAS.ti.
RESULTS - Physicians at family and pediatric medicine practices rely primarily on written reports for medical studies other than X-rays; and thus do not report difficulties accessing outside imaging studies. Subspecialists in urban, suburban, and small towns view imaging studies through internal communication systems, internet portals, or portable media. Many subspecialists and their staff report experiencing difficulty and time delays in accessing and using imaging studies on portable media.
CONCLUSION - Subspecialists have distinct needs for viewing imaging studies that are not shared by typical primary care providers. As development and implementation of technical strategies to share medical records continue, this variation in need and use should be noted. The sharing and viewing of medical imaging studies on portable media is often inefficient and fails to meet the needs of many subspeciality physicians, and can lead to repeated imaging studies.
1 Communities
1 Members
0 Resources
8 MeSH Terms
Clictate: a computer-based documentation tool for guideline-based care.
Johnson KB, Cowan J
(2002) J Med Syst 26: 47-60
MeSH Terms: Child, Data Display, Decision Support Systems, Clinical, Documentation, Evidence-Based Medicine, Forms and Records Control, Humans, Medical Records Systems, Computerized, Patient Care Planning, Pediatrics, User-Computer Interface
Show Abstract · Added February 12, 2015
The use of computer-based documentation tools confers many benefits to the delivery of evidence-based health care. We developed Clictate, a structured reporting environment that utilized standard Windows-based data entry constructs and natural language generation. Clictate has been in use for over 3 years by pediatric providers in an ambulatory setting. More than 50% of our providers use Clictate during the patient encounter. This report describes our results to date, and suggests future opportunities for research and development in the area of computer-based documentation.
0 Communities
1 Members
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11 MeSH Terms
Reliability of macaque frontal eye field neurons signaling saccade targets during visual search.
Bichot NP, Thompson KG, Chenchal Rao S, Schall JD
(2001) J Neurosci 21: 713-25
MeSH Terms: Action Potentials, Animals, Attention, Cell Count, Color, Data Display, Fixation, Ocular, Macaca mulatta, Neurons, Pattern Recognition, Visual, Photic Stimulation, Reaction Time, Reproducibility of Results, Saccades, Signal Processing, Computer-Assisted, Visual Cortex
Show Abstract · Added February 12, 2015
Although many studies have explored the neural correlates of visual attention and selection, few have examined the reliability with which neurons represent relevant information. We monitored activity in the frontal eye field (FEF) of monkeys trained to make a saccade to a target defined by the conjunction of color and shape or to a target defined by color differences. The difficulty of conjunction search was manipulated by varying the number of distractors, and the difficulty of feature search was manipulated by varying the similarity in color between target and distractors. The reliability of individual neurons in signaling the target location in correct trials was determined using a neuron-anti-neuron approach within a winner-take-all architecture. On average, approximately seven trials of the activity of single neurons were sufficient to match near-perfect behavioral performance in the easiest search, and approximately 14 trials were sufficient in the most difficult search. We also determined how many neurons recorded separately need to be evaluated within a trial to match behavioral performance. Results were quantitatively similar to those of the single neuron analysis. We also found that signal reliability in the FEF did not change with task demands, and overall, behavioral accuracy across the search tasks was approximated when only six trials or neurons were combined. Furthermore, whether combining trials or neurons, the increase in time of target discrimination corresponded to the increase in mean saccade latency across visual search difficulty levels. Finally, the variance of spike counts in the FEF increased as a function of the mean spike count, and the parameters of this relationship did not change with attentional selection.
0 Communities
1 Members
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16 MeSH Terms
Emotional responses to pleasant and unpleasant olfactory, visual, and auditory stimuli: a positron emission tomography study.
Royet JP, Zald D, Versace R, Costes N, Lavenne F, Koenig O, Gervais R
(2000) J Neurosci 20: 7752-9
MeSH Terms: Acoustic Stimulation, Adult, Brain, Brain Mapping, Data Display, Emotions, Female, Humans, Male, Odorants, Photic Stimulation, Pilot Projects, Reaction Time, Reference Values, Smell, Stimulation, Chemical, Tomography, Emission-Computed
Show Abstract · Added May 27, 2014
Neural correlates of responses to emotionally valenced olfactory, visual, and auditory stimuli were examined using positron emission tomography. Twelve volunteers were scanned using the water bolus method. For each sensory modality, regional cerebral blood flow (rCBF) during presentation of both pleasant and unpleasant stimuli was compared with that measured during presentation of neutral stimuli. During the emotionally valenced conditions, subjects performed forced-choice pleasant and unpleasant judgments. During the neutral conditions, subjects were asked to select at random one of a two key-press buttons. All stimulations were synchronized with inspiration, using an airflow olfactometer, to present the same number of stimuli for each sensory modality. A no-stimulation control condition was also performed in which no stimulus was presented. For all three sensory modalities, emotionally valenced stimuli led to increased rCBF in the orbitofrontal cortex, the temporal pole, and the superior frontal gyrus, in the left hemisphere. Emotionally valenced olfactory and visual but not auditory stimuli produced additional rCBF increases in the hypothalamus and the subcallosal gyrus. Only emotionally valenced olfactory stimuli induced bilateral rCBF increases in the amygdala. These findings suggest that pleasant and unpleasant emotional judgments recruit the same core network in the left hemisphere, regardless of the sensory modality. This core network is activated in addition to a number of circuits that are specific to individual sensory modalities. Finally, the data suggest a superior potency of emotionally valenced olfactory over visual and auditory stimuli in activating the amygdala.
0 Communities
1 Members
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17 MeSH Terms
Expertise for cars and birds recruits brain areas involved in face recognition.
Gauthier I, Skudlarski P, Gore JC, Anderson AW
(2000) Nat Neurosci 3: 191-7
MeSH Terms: Adult, Animals, Automobiles, Birds, Brain Mapping, Data Display, Face, Humans, Magnetic Resonance Imaging, Male, Occipital Lobe, Pattern Recognition, Visual, Photic Stimulation, Professional Competence, Task Performance and Analysis, Temporal Lobe
Show Abstract · Added December 10, 2013
Expertise with unfamiliar objects ('greebles') recruits face-selective areas in the fusiform gyrus (FFA) and occipital lobe (OFA). Here we extend this finding to other homogeneous categories. Bird and car experts were tested with functional magnetic resonance imaging during tasks with faces, familiar objects, cars and birds. Homogeneous categories activated the FFA more than familiar objects. Moreover, the right FFA and OFA showed significant expertise effects. An independent behavioral test of expertise predicted relative activation in the right FFA for birds versus cars within each group. The results suggest that level of categorization and expertise, rather than superficial properties of objects, determine the specialization of the FFA.
0 Communities
2 Members
0 Resources
16 MeSH Terms
The human vector magnetogastrogram and magnetoenterogram.
Bradshaw LA, Ladipo JK, Staton DJ, Wikswo JP, Richards WO
(1999) IEEE Trans Biomed Eng 46: 959-70
MeSH Terms: Analog-Digital Conversion, Data Display, Digestive System Physiological Phenomena, Electrodiagnosis, Electromagnetic Phenomena, Electrophysiology, Equipment Design, Humans, Intestine, Small, Magnetics, Reference Values, Stomach
Show Abstract · Added May 29, 2014
Electrical activity in the gastrointestinal system produces magnetic fields that may be measured with superconducting quantum interference device magnetometers. Although typical magnetometers have detection coils that measure a single component of the magnetic field, gastric and intestinal magnetic fields are vector quantities. We recorded gastric and intestinal magnetic fields from nine abdominal sections in nine normal human volunteers using a vector magnetometer that measures all three Cartesian components of the magnetic field vector. A vector projection technique was utilized to separate the magnetic field vectors corresponding to gastric and intestinal activity. The gastric magnetic field vector was oriented in a cephalad direction, consistent with previously observed data, and displayed oscillatory characteristics of gastric electrical activity (f = 3.03 +/- 0.18 cycles/min). Although the small bowel magnetic field vector showed no consistent orientation, the characteristic frequency gradient of the small bowel electrical activity was observed. Gastric and intestinal magnetic field vectors were oriented in different directions and were thus distinguished by the vector projection technique. The observed difference in direction of gastric and intestinal magnetic field vectors indicates that vector recordings dramatically increase the ability to separate physiological signal components from nonphysiological components and to distinguish between different physiological components.
0 Communities
1 Members
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12 MeSH Terms
Computer graphics representation of levels of organization in tobacco mosaic virus structure.
Namba K, Caspar DL, Stubbs GJ
(1985) Science 227: 773-6
MeSH Terms: Computers, Data Display, Macromolecular Substances, Models, Structural, Tobacco Mosaic Virus
Show Abstract · Added February 15, 2016
Methods for simplifying computer graphics images of atomic models of complex macromolecular assemblies have been applied to the tobacco mosaic virus structure to display different levels of its organization. By constructing sharply outlined pictures of the parts of the virus particle with the image resolution reduced or with obscuring detail eliminated, aspects of the subunit packing and chain folding are distinctly illustrated.
0 Communities
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5 MeSH Terms