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Clinical performance of digital cervicography and cytology for cervical cancer screening in HIV-infected women in Lusaka, Zambia.
Bateman AC, Parham GP, Sahasrabuddhe VV, Mwanahamuntu MH, Kapambwe S, Katundu K, Nkole T, Mulundika J, Pfaendler KS, Hicks ML, Shibemba A, Vermund SH, Stringer JS, Chibwesha CJ
(2014) J Acquir Immune Defic Syndr 67: 212-5
MeSH Terms: Acetic Acid, Adult, Cervical Intraepithelial Neoplasia, Colposcopy, Cytological Techniques, Female, HIV Infections, Humans, Mass Screening, Middle Aged, Optical Imaging, Sensitivity and Specificity, Uterine Cervical Neoplasms, Young Adult, Zambia
Show Abstract · Added March 17, 2015
Although there is a growing literature on the clinical performance of visual inspection with acetic acid in HIV-infected women, to the best of our knowledge, none have studied visual inspection with acetic acid enhanced by digital cervicography. We estimated clinical performance of cervicography and cytology to detect cervical intraepithelial neoplasia grade 2 or worse. Sensitivity and specificity of cervicography were 84% [95% confidence interval (CI): 72 to 91) and 58% (95% CI: 52 to 64). At the high-grade squamous intraepithelial lesion or worse cutoff for cytology, sensitivity and specificity were 61% (95% CI: 48 to 72) and 58% (95% CI: 52 to 64). In our study, cervicography seems to be as good as cytology in HIV-infected women.
0 Communities
1 Members
0 Resources
15 MeSH Terms
Analytic and clinical performance of cobas HPV testing in anal specimens from HIV-positive men who have sex with men.
Wentzensen N, Follansbee S, Borgonovo S, Tokugawa D, Sahasrabuddhe VV, Chen J, Lorey TS, Gage JC, Fetterman B, Boyle S, Sadorra M, Tang SD, Darragh TM, Castle PE
(2014) J Clin Microbiol 52: 2892-7
MeSH Terms: Adolescent, Adult, Anus Diseases, Cytological Techniques, Genotyping Techniques, Homosexuality, Male, Humans, Male, Middle Aged, Papillomaviridae, Papillomavirus Infections, Sensitivity and Specificity, Young Adult
Show Abstract · Added June 9, 2014
Anal human papillomavirus (HPV) infections are common, and the incidence of anal cancer is high in HIV-infected men who have sex with men (MSM). To evaluate the performance of HPV assays in anal samples, we compared the cobas HPV test (cobas) to the Roche Linear Array HPV genotyping assay (LA) and cytology in HIV-infected MSM. Cytology and cobas and LA HPV testing were conducted for 342 subjects. We calculated agreement between the HPV assays and the clinical performance of HPV testing and HPV genotyping alone and in combination with anal cytology. We observed high agreement between cobas and LA, with cobas more likely than LA to show positive results for HPV16, HPV18, and other carcinogenic types. Specimens testing positive in cobas but not in LA were more likely to be positive for other markers of HPV-related disease compared to those testing negative in both assays, suggesting that at least some of these were true positives for HPV. cobas and LA showed high sensitivities but low specificities for the detection of anal intraepithelial neoplasia grade 2/3 (AIN2/3) in this population (100% sensitivity and 26% specificity for cobas versus 98.4% sensitivity and 28.9% specificity for LA). A combination of anal cytology and HPV genotyping provided the highest accuracy for detecting anal precancer. A higher HPV load was associated with a higher risk of AIN2/3 with HPV16 (P(trend) < 0.001), HPV18 (P(trend) = 0.07), and other carcinogenic types (P(trend) < 0.001). We demonstrate that cobas can be used for HPV detection in anal cytology specimens. Additional tests are necessary to identify men at the highest risk of anal cancer among those infected with high-risk HPV.
Copyright © 2014, American Society for Microbiology. All Rights Reserved.
0 Communities
1 Members
0 Resources
13 MeSH Terms
Techniques and assays for the study of angiogenesis.
Irvin MW, Zijlstra A, Wikswo JP, Pozzi A
(2014) Exp Biol Med (Maywood) 239: 1476-88
MeSH Terms: Cytological Techniques, Humans, Neovascularization, Pathologic, Neovascularization, Physiologic, Pathology
Show Abstract · Added October 27, 2014
The importance of studying angiogenesis, the formation of new blood vessels from pre-existing vessels, is underscored by its involvement in both normal physiology, such as embryonic growth and wound healing, and pathologies, such as diabetes and cancer. Treatments targeting the molecular drive of angiogenesis have been developed, but many of the molecular mechanisms that mediate vascularization, as well as how these mechanisms can be targeted in therapy, remain poorly understood. The limited capacity to quantify angiogenesis properly curtails our molecular understanding and development of new drugs and therapies. Although there are a number of assays for angiogenesis, many of them strip away its important components and/or limit control of the variables that direct this highly cooperative and complex process. Here we review assays commonly used in endothelial cell biology and describe the progress toward development of a physiologically realistic platform that will enable a better understanding of the molecular and physical mechanisms that govern angiogenesis.
© 2014 by the Society for Experimental Biology and Medicine.
1 Communities
4 Members
1 Resources
5 MeSH Terms
A microfluidic-enabled mechanical microcompressor for the immobilization of live single- and multi-cellular specimens.
Yan Y, Jiang L, Aufderheide KJ, Wright GA, Terekhov A, Costa L, Qin K, McCleery WT, Fellenstein JJ, Ustione A, Robertson JB, Johnson CH, Piston DW, Hutson MS, Wikswo JP, Hofmeister W, Janetopoulos C
(2014) Microsc Microanal 20: 141-51
MeSH Terms: Animals, Cytological Techniques, Drosophila melanogaster, Equipment Design, Microfluidic Analytical Techniques, Paramecium tetraurelia, Single-Cell Analysis, Tetrahymena thermophila, Yeasts
Show Abstract · Added March 10, 2014
A microcompressor is a precision mechanical device that flattens and immobilizes living cells and small organisms for optical microscopy, allowing enhanced visualization of sub-cellular structures and organelles. We have developed an easily fabricated device, which can be equipped with microfluidics, permitting the addition of media or chemicals during observation. This device can be used on both upright and inverted microscopes. The apparatus permits micrometer precision flattening for nondestructive immobilization of specimens as small as a bacterium, while also accommodating larger specimens, such as Caenorhabditis elegans, for long-term observations. The compressor mount is removable and allows easy specimen addition and recovery for later observation. Several customized specimen beds can be incorporated into the base. To demonstrate the capabilities of the device, we have imaged numerous cellular events in several protozoan species, in yeast cells, and in Drosophila melanogaster embryos. We have been able to document previously unreported events, and also perform photobleaching experiments, in conjugating Tetrahymena thermophila.
1 Communities
6 Members
0 Resources
9 MeSH Terms
Established and novel methods of interrogating two-dimensional cell migration.
Ashby WJ, Zijlstra A
(2012) Integr Biol (Camb) 4: 1338-50
MeSH Terms: Biophysical Phenomena, Cell Count, Cell Movement, Cytological Techniques, Electric Impedance, Magnetics, Microfluidic Analytical Techniques, Models, Biological, Systems Biology
Show Abstract · Added June 24, 2013
The regulation of cell motility is central to living systems. Consequently, cell migration assays are some of the most frequently used in vitro assays. This article provides a comprehensive, detailed review of in vitro cell migration assays both currently in use and possible with existing technology. Emphasis is given to two-dimensional migration assays using densely organized cells such as the scratch assay. Assays are compared and categorized in an outline format according to their primary biological readout and physical parameters. The individual benefits of the various methods and quantification strategies are also discussed. This review provides an in-depth, structured overview of in vitro cell migration assays as a means of enabling the reader to make informed decisions among the growing number of options available for their specific cell migration application.
1 Communities
1 Members
0 Resources
9 MeSH Terms
CellAnimation: an open source MATLAB framework for microscopy assays.
Georgescu W, Wikswo JP, Quaranta V
(2012) Bioinformatics 28: 138-9
MeSH Terms: Algorithms, Cytological Techniques, Image Processing, Computer-Assisted, Internet, Microscopy, Software
Show Abstract · Added February 18, 2013
MOTIVATION - Advances in microscopy technology have led to the creation of high-throughput microscopes that are capable of generating several hundred gigabytes of images in a few days. Analyzing such wealth of data manually is nearly impossible and requires an automated approach. There are at present a number of open-source and commercial software packages that allow the user to apply algorithms of different degrees of sophistication to the images and extract desired metrics. However, the types of metrics that can be extracted are severely limited by the specific image processing algorithms that the application implements, and by the expertise of the user. In most commercial software, code unavailability prevents implementation by the end user of newly developed algorithms better suited for a particular type of imaging assay. While it is possible to implement new algorithms in open-source software, rewiring an image processing application requires a high degree of expertise. To obviate these limitations, we have developed an open-source high-throughput application that allows implementation of different biological assays such as cell tracking or ancestry recording, through the use of small, relatively simple image processing modules connected into sophisticated imaging pipelines. By connecting modules, non-expert users can apply the particular combination of well-established and novel algorithms developed by us and others that are best suited for each individual assay type. In addition, our data exploration and visualization modules make it easy to discover or select specific cell phenotypes from a heterogeneous population.
AVAILABILITY - CellAnimation is distributed under the Creative Commons Attribution-NonCommercial 3.0 Unported license (http://creativecommons.org/licenses/by-nc/3.0/). CellAnimationsource code and documentation may be downloaded from www.vanderbilt.edu/viibre/software/documents/CellAnimation.zip. Sample data are available at www.vanderbilt.edu/viibre/software/documents/movies.zip.
CONTACT - walter.georgescu@vanderbilt.edu
SUPPLEMENTARY INFORMATION - Supplementary data available at Bioinformatics online.
3 Communities
3 Members
0 Resources
6 MeSH Terms
Isolation & characterization of Hoechst(low) CD45(negative) mouse lung mesenchymal stem cells.
Chow KS, Jun D, Helm KM, Wagner DH, Majka SM
(2011) J Vis Exp : e3159
MeSH Terms: Animals, Benzimidazoles, Cell Separation, Cytological Techniques, Flow Cytometry, Leukocyte Common Antigens, Lung, Mesenchymal Stem Cells, Mice, Mice, Inbred C57BL
Show Abstract · Added August 4, 2015
Tissue resident mesenchymal stem cells (MSC) are important regulators of tissue repair or regeneration, fibrosis, inflammation, angiogenesis and tumor formation. Taken together these studies suggest that resident lung MSC play a role during pulmonary tissue homeostasis, injury and repair during diseases such as pulmonary fibrosis (PF) and arterial hypertension (PAH). Here we describe a technology to define a population of resident lung MSC. The definition of this population in vivo pulmonary tissue using a define set of markers facilitates the repeated isolation of a well-characterized stem cell population by flow cytometry and the study of a specific cell type and function.
1 Communities
1 Members
0 Resources
10 MeSH Terms
How do control-based approaches enter into biology?
LeDuc PR, Messner WC, Wikswo JP
(2011) Annu Rev Biomed Eng 13: 369-96
MeSH Terms: Animals, Cell Physiological Phenomena, Cells, Cytological Techniques, Feedback, Physiological, Humans, Models, Biological, Systems Biology
Show Abstract · Added March 27, 2014
Control is intrinsic to biological organisms, whose cells are in a constant state of sensing and response to numerous external and self-generated stimuli. Diverse means are used to study the complexity through control-based approaches in these cellular systems, including through chemical and genetic manipulations, input-output methodologies, feedback approaches, and feed-forward approaches. We first discuss what happens in control-based approaches when we are not actively examining or manipulating cells. We then present potential methods to determine what the cell is doing during these times and to reverse-engineer the cellular system. Finally, we discuss how we can control the cell's extracellular and intracellular environments, both to probe the response of the cells using defined experimental engineering-based technologies and to anticipate what might be achieved by applying control-based approaches to affect cellular processes. Much work remains to apply simplified control models and develop new technologies to aid researchers in studying and utilizing cellular and molecular processes.
1 Communities
2 Members
0 Resources
8 MeSH Terms
Not all noise is waste.
Quaranta V, Garbett SP
(2010) Nat Methods 7: 269-72
MeSH Terms: Cytological Techniques, Eukaryotic Cells, Gene Expression Regulation, Stochastic Processes
Show Abstract · Added February 18, 2013
Stochastic profiling, a method to rank heterogeneity of gene expression in a cell population, shows that quantifying cell-to-cell variability has come of age and leads to biological insight.
3 Communities
2 Members
0 Resources
4 MeSH Terms
First-class delivery: getting growth factors to their destination.
Davidson JM
(2008) J Invest Dermatol 128: 1360-2
MeSH Terms: Animals, Cytological Techniques, Drug Delivery Systems, Extracellular Matrix, Fibroblast Growth Factor 7, Fibroblast Growth Factors, Gene Transfer Techniques, Genetic Techniques, Humans, Intercellular Signaling Peptides and Proteins, Mice, Models, Biological, Protein Transport, Transfection, Wound Healing
Show Abstract · Added December 10, 2013
Growth factor bioavailability in therapeutic applications such as wound healing is limited by extracellular matrix sequestration, proteolysis, and clearance. Local, transient delivery by gene transfer is an attractive concept. Many transfection strategies are available, and adenoviral vectors are in clinical trials. Keratinocyte growth factor-1 (KGF-1), an epithelial-specific member of the fibroblast growth factor (FGF) family, has achieved limited success in protein formulations. Matrix- and cell-based strategies for delivering a KGF-1 virion to target tissue may improve the reproducibility and efficiency of the process, although the advantages of cell-based therapy must be weighed against its added cost and complexity.
0 Communities
1 Members
0 Resources
15 MeSH Terms