Other search tools

About this data

The publication data currently available has been vetted by Vanderbilt faculty, staff, administrators and trainees. The data itself is retrieved directly from NCBI's PubMed and is automatically updated on a weekly basis to ensure accuracy and completeness.

If you have any questions or comments, please contact us.

Results: 1 to 10 of 25

Publication Record

Connections

Human DNA polymerase η accommodates RNA for strand extension.
Su Y, Egli M, Guengerich FP
(2017) J Biol Chem 292: 18044-18051
MeSH Terms: 8-Hydroxy-2'-Deoxyguanosine, Base Pair Mismatch, DNA Primers, DNA Replication, DNA-Directed DNA Polymerase, Deoxyguanosine, Electrophoretic Mobility Shift Assay, Humans, Kinetics, Nucleic Acid Heteroduplexes, Nucleic Acid Hybridization, Oligodeoxyribonucleotides, Oligoribonucleotides, Pyrimidine Dimers, RNA, Recombinant Proteins, Reverse Transcription, Substrate Specificity, Transcription Elongation, Genetic
Added March 14, 2018
0 Communities
1 Members
0 Resources
19 MeSH Terms
Sequence context modulation of polycyclic aromatic hydrocarbon-induced mutagenesis.
Chary P, Stone MP, Lloyd RS
(2013) Environ Mol Mutagen 54: 652-8
MeSH Terms: Base Pair Mismatch, DNA Adducts, DNA Polymerase I, DNA-Directed DNA Polymerase, Escherichia coli, Molecular Structure, Mutagenesis, Mutagens, Polycyclic Aromatic Hydrocarbons, Stereoisomerism
Added March 7, 2014
0 Communities
1 Members
0 Resources
10 MeSH Terms
Structures of (5'S)-8,5'-Cyclo-2'-deoxyguanosine Mismatched with dA or dT.
Huang H, Das RS, Basu AK, Stone MP
(2012) Chem Res Toxicol 25: 478-90
MeSH Terms: Base Pair Mismatch, Deoxyadenosines, Deoxyguanosine, Magnetic Resonance Spectroscopy, Molecular Dynamics Simulation, Molecular Structure, Thymidine
Added March 7, 2014
0 Communities
1 Members
0 Resources
7 MeSH Terms
1,N2-Etheno-2'-deoxyguanosine adopts the syn conformation about the glycosyl bond when mismatched with deoxyadenosine.
Shanmugam G, Kozekov ID, Guengerich FP, Rizzo CJ, Stone MP
(2011) Chem Res Toxicol 24: 1071-9
MeSH Terms: Base Pair Mismatch, DNA Polymerase I, DNA Polymerase II, DNA Polymerase beta, Deoxyadenosines, Escherichia coli, Hydrogen Bonding, Hydrogen-Ion Concentration, Magnetic Resonance Spectroscopy, Oligodeoxyribonucleotides, Protons, Sulfolobus solfataricus, Transition Temperature
Added March 7, 2014
0 Communities
3 Members
0 Resources
13 MeSH Terms
Steric and electrostatic effects at the C2 atom substituent influence replication and miscoding of the DNA deamination product deoxyxanthosine and analogs by DNA polymerases.
Zhang H, Bren U, Kozekov ID, Rizzo CJ, Stec DF, Guengerich FP
(2009) J Mol Biol 392: 251-69
MeSH Terms: Bacteriophage T7, Base Pair Mismatch, DNA, DNA Polymerase beta, DNA Replication, DNA-Directed DNA Polymerase, Deamination, Deoxyribonucleosides, Inosine, Kinetics, Static Electricity, Sulfolobus solfataricus
Added March 26, 2014
0 Communities
3 Members
0 Resources
12 MeSH Terms
The enteropathy of prostaglandin deficiency.
Adler DH, Phillips JA, Cogan JD, Iverson TM, Schnetz-Boutaud N, Stein JA, Brenner DA, Milne GL, Morrow JD, Boutaud O, Oates JA
(2009) J Gastroenterol 44 Suppl 19: 1-7
MeSH Terms: Arachidonic Acid, Base Pair Mismatch, Base Sequence, DNA, Complementary, Eicosanoids, Group IV Phospholipases A2, Humans, Intestinal Diseases, Intestine, Small, Leukotriene B4, Leukotriene E4, Male, Middle Aged, Polymorphism, Single Nucleotide, Ulcer
Added March 26, 2014
2 Communities
2 Members
0 Resources
15 MeSH Terms
Translesion DNA synthesis by human DNA polymerase eta on templates containing a pyrimidopurinone deoxyguanosine adduct, 3-(2'-deoxy-beta-d-erythro-pentofuranosyl)pyrimido-[1,2-a]purin-10(3H)-one.
Stafford JB, Eoff RL, Kozekova A, Rizzo CJ, Guengerich FP, Marnett LJ
(2009) Biochemistry 48: 471-80
MeSH Terms: Bacteriophage T4, Base Pair Mismatch, Base Sequence, DNA Adducts, DNA Replication, DNA-Directed DNA Polymerase, Deoxyguanosine, Escherichia coli, Humans, Kinetics, Mutagenesis, Site-Directed, Phosphorylation, Polynucleotide 5'-Hydroxyl-Kinase, Purine Nucleosides, Recombinant Proteins, Templates, Genetic, Uracil-DNA Glycosidase
Added March 7, 2014
0 Communities
3 Members
0 Resources
17 MeSH Terms
Conformational interconversion of the trans-4-hydroxynonenal-derived (6S,8R,11S) 1,N(2)-deoxyguanosine adduct when mismatched with deoxyadenosine in DNA.
Huang H, Wang H, Lloyd RS, Rizzo CJ, Stone MP
(2009) Chem Res Toxicol 22: 187-200
MeSH Terms: Aldehydes, Base Pair Mismatch, DNA, DNA Adducts, Deoxyadenosines, Deoxyguanosine, Molecular Conformation, Stereoisomerism
Added March 7, 2014
0 Communities
2 Members
0 Resources
8 MeSH Terms
Effects of N2,N2-dimethylguanosine on RNA structure and stability: crystal structure of an RNA duplex with tandem m2 2G:A pairs.
Pallan PS, Kreutz C, Bosio S, Micura R, Egli M
(2008) RNA 14: 2125-35
MeSH Terms: Adenine, Base Pair Mismatch, Base Pairing, Crystallography, X-Ray, Guanosine, Hydrogen Bonding, Methylation, Nucleic Acid Conformation, RNA, RNA Stability, Transition Temperature, Ultraviolet Rays
Added May 27, 2014
0 Communities
1 Members
0 Resources
12 MeSH Terms
Crystal structure, stability and in vitro RNAi activity of oligoribonucleotides containing the ribo-difluorotoluyl nucleotide: insights into substrate requirements by the human RISC Ago2 enzyme.
Li F, Pallan PS, Maier MA, Rajeev KG, Mathieu SL, Kreutz C, Fan Y, Sanghvi J, Micura R, Rozners E, Manoharan M, Egli M
(2007) Nucleic Acids Res 35: 6424-38
MeSH Terms: Argonaute Proteins, Base Pair Mismatch, Base Pairing, Crystallography, X-Ray, Eukaryotic Initiation Factor-2, Fluorobenzenes, HeLa Cells, Humans, Hydrogen Bonding, Models, Molecular, Nucleotides, Oligoribonucleotides, Osmotic Pressure, RNA Interference, RNA, Small Interfering, RNA-Induced Silencing Complex, Substrate Specificity, Thermodynamics
Added March 5, 2014
0 Communities
1 Members
0 Resources
18 MeSH Terms