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The publication data currently available has been vetted by Vanderbilt faculty, staff, administrators and trainees. The data itself is retrieved directly from NCBI's PubMed and is automatically updated on a weekly basis to ensure accuracy and completeness.

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Results: 1 to 10 of 34

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Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples.
Bailey MH, Meyerson WU, Dursi LJ, Wang LB, Dong G, Liang WW, Weerasinghe A, Li S, Li Y, Kelso S, MC3 Working Group, PCAWG novel somatic mutation calling methods working group, Saksena G, Ellrott K, Wendl MC, Wheeler DA, Getz G, Simpson JT, Gerstein MB, Ding L, PCAWG Consortium
(2020) Nat Commun 11: 4748
MeSH Terms: Base Composition, DNA, Intergenic, Databases, Genetic, Exome, Exons, Genome, Human, Humans, Mutation, Neoplasms, Retrospective Studies, Whole Exome Sequencing, Whole Genome Sequencing
Added April 27, 2021
0 Communities
1 Members
0 Resources
MeSH Terms
Sequence Characteristics Distinguish Transcribed Enhancers from Promoters and Predict Their Breadth of Activity.
Colbran LL, Chen L, Capra JA
(2019) Genetics 211: 1205-1217
MeSH Terms: Base Composition, Enhancer Elements, Genetic, Histone Code, Humans, Models, Genetic, Promoter Regions, Genetic, Support Vector Machine, Transcription Factors, Transcriptional Activation
Added March 3, 2020
0 Communities
1 Members
0 Resources
MeSH Terms
A Genome-Scale Investigation of How Sequence, Function, and Tree-Based Gene Properties Influence Phylogenetic Inference.
Shen XX, Salichos L, Rokas A
(2016) Genome Biol Evol 8: 2565-80
MeSH Terms: Animals, Base Composition, Genome, Fungal, Mammals, Phylogeny, Sequence Alignment, Yeasts
Added April 6, 2017
0 Communities
1 Members
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7 MeSH Terms
Ongoing GC-biased evolution is widespread in the human genome and enriched near recombination hot spots.
Katzman S, Capra JA, Haussler D, Pollard KS
(2011) Genome Biol Evol 3: 614-26
MeSH Terms: Base Composition, Chromosomes, Human, Computational Biology, Evolution, Molecular, Gene Frequency, Genome, Human, Humans, Polymorphism, Single Nucleotide, Recombination, Genetic, Statistics as Topic
Added April 18, 2017
0 Communities
1 Members
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10 MeSH Terms
Substitution patterns are GC-biased in divergent sequences across the metazoans.
Capra JA, Pollard KS
(2011) Genome Biol Evol 3: 516-27
MeSH Terms: Animals, Base Composition, Base Sequence, Bias, Dogs, Evolution, Molecular, Gene Conversion, Genome, Humans, Mice, Odds Ratio, Phylogeny, Species Specificity
Added April 18, 2017
0 Communities
1 Members
0 Resources
13 MeSH Terms
Features of recent codon evolution: a comparative polymorphism-fixation study.
Zhao Z, Jiang C
(2010) J Biomed Biotechnol 2010: 202918
MeSH Terms: Amino Acid Substitution, Animals, Base Composition, Codon, CpG Islands, Evolution, Molecular, Humans, Mice, Mutation, Pan troglodytes, Polymorphism, Genetic, Species Specificity
Added March 5, 2014
0 Communities
1 Members
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12 MeSH Terms
Cloning of adipose triglyceride lipase complementary deoxyribonucleic acid in poultry and expression of adipose triglyceride lipase during development of adipose in chickens.
Lee K, Shin J, Latshaw JD, Suh Y, Serr J
(2009) Poult Sci 88: 620-30
MeSH Terms: Adipose Tissue, Amino Acid Sequence, Animals, Base Composition, Chickens, Cloning, Molecular, DNA, Complementary, Gene Expression Regulation, Developmental, Lipase, Molecular Sequence Data, Quail, Turkeys
Added March 3, 2014
0 Communities
1 Members
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12 MeSH Terms
Evidence for variable selective pressures at a large secondary structure of the human mitochondrial DNA control region.
Pereira F, Soares P, Carneiro J, Pereira L, Richards MB, Samuels DC, Amorim A
(2008) Mol Biol Evol 25: 2759-70
MeSH Terms: Animals, Base Composition, DNA, Mitochondrial, Gene Deletion, Humans, Locus Control Region, Mitochondria, Nucleic Acid Conformation, Primates, Selection, Genetic
Added December 12, 2013
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1 Members
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10 MeSH Terms
CpG island density and its correlations with genomic features in mammalian genomes.
Han L, Su B, Li WH, Zhao Z
(2008) Genome Biol 9: R79
MeSH Terms: Animals, Base Composition, Cattle, Chromosomes, Mammalian, Computational Biology, CpG Islands, Dogs, Genome, Genome, Human, Humans, Mammals, Mice, Rats, Recombination, Genetic
Added March 5, 2014
0 Communities
1 Members
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14 MeSH Terms
Directionality of point mutation and 5-methylcytosine deamination rates in the chimpanzee genome.
Jiang C, Zhao Z
(2006) BMC Genomics 7: 316
MeSH Terms: 5-Methylcytosine, Animals, Base Composition, CpG Islands, DNA Mutational Analysis, Databases, Nucleic Acid, Deamination, Evolution, Molecular, Exons, Genome, Genome, Human, Humans, Pan troglodytes, Point Mutation, Polymorphism, Single Nucleotide
Added March 5, 2014
0 Communities
1 Members
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15 MeSH Terms