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The publication data currently available has been vetted by Vanderbilt faculty, staff, administrators and trainees. The data itself is retrieved directly from NCBI's PubMed and is automatically updated on a weekly basis to ensure accuracy and completeness.

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Results: 1 to 10 of 46

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Selective base excision repair of DNA damage by the non-base-flipping DNA glycosylase AlkC.
Shi R, Mullins EA, Shen XX, Lay KT, Yuen PK, David SS, Rokas A, Eichman BF
(2018) EMBO J 37: 63-74
MeSH Terms: Adenine, Alkylation, Amino Acid Sequence, Bacillus cereus, Catalytic Domain, Crystallography, X-Ray, DNA Adducts, DNA Damage, DNA Glycosylases, DNA Repair, Models, Molecular, Protein Conformation, Sequence Homology
Added March 21, 2018
0 Communities
2 Members
0 Resources
13 MeSH Terms
Quantitative chemoproteomics for site-specific analysis of protein alkylation by 4-hydroxy-2-nonenal in cells.
Yang J, Tallman KA, Porter NA, Liebler DC
(2015) Anal Chem 87: 2535-41
MeSH Terms: Aldehydes, Alkylation, Chromatography, Liquid, Colorectal Neoplasms, Cross-Linking Reagents, Humans, Neoplasm Proteins, Protein Processing, Post-Translational, Tandem Mass Spectrometry, Tumor Cells, Cultured
Added February 15, 2016
0 Communities
2 Members
0 Resources
10 MeSH Terms
Ion/ion reactions with "onium" reagents: an approach for the gas-phase transfer of organic cations to multiply-charged anions.
Gilbert JD, Prentice BM, McLuckey SA
(2015) J Am Soc Mass Spectrom 26: 818-25
MeSH Terms: Alkylation, CME-Carbodiimide, Catalysis, Chelating Agents, Cross-Linking Reagents, Edetic Acid, Energy Transfer, Hot Temperature, Indicators and Reagents, Models, Molecular, Oligopeptides, Organophosphorus Compounds, Protein Conformation, Quaternary Ammonium Compounds, Spectrometry, Mass, Electrospray Ionization, Static Electricity, Sulfonium Compounds, Tandem Mass Spectrometry, Tetraethylammonium, Volatilization
Added August 17, 2016
0 Communities
1 Members
0 Resources
20 MeSH Terms
Major groove orientation of the (2S)-N(6)-(2-hydroxy-3-buten-1-yl)-2'-deoxyadenosine DNA adduct induced by 1,2-epoxy-3-butene.
Kowal EA, Wickramaratne S, Kotapati S, Turo M, Tretyakova N, Stone MP
(2014) Chem Res Toxicol 27: 1675-86
MeSH Terms: Alkylation, Butadienes, DNA, DNA Adducts, Deoxyadenosines, Epoxy Compounds, Humans, Molecular Dynamics Simulation, Nuclear Magnetic Resonance, Biomolecular, Nucleic Acid Conformation, Nucleic Acid Denaturation, Oligodeoxyribonucleotides, Stereoisomerism, Transition Temperature, ras Proteins
Added January 20, 2015
0 Communities
1 Members
0 Resources
15 MeSH Terms
Interplay between base excision repair activity and toxicity of 3-methyladenine DNA glycosylases in an E. coli complementation system.
Troll CJ, Adhikary S, Cueff M, Mitra I, Eichman BF, Camps M
(2014) Mutat Res 763-764: 64-73
MeSH Terms: Alkylation, DNA Glycosylases, DNA Repair, Escherichia coli, Genetic Complementation Test, Mutation, Saccharomyces cerevisiae, Schizosaccharomyces, Schizosaccharomyces pombe Proteins
Added May 27, 2014
1 Communities
1 Members
0 Resources
9 MeSH Terms
Alkylation damage by lipid electrophiles targets functional protein systems.
Codreanu SG, Ullery JC, Zhu J, Tallman KA, Beavers WN, Porter NA, Marnett LJ, Zhang B, Liebler DC
(2014) Mol Cell Proteomics 13: 849-59
MeSH Terms: Aldehydes, Alkylation, Cell Line, Electrons, Glutathione, Humans, Lipids, Protein Interaction Maps, Proteins, Proteome
Added March 20, 2014
0 Communities
4 Members
0 Resources
10 MeSH Terms
An HPLC-tandem mass spectrometry method for simultaneous detection of alkylated base excision repair products.
Mullins EA, Rubinson EH, Pereira KN, Calcutt MW, Christov PP, Eichman BF
(2013) Methods 64: 59-66
MeSH Terms: Alkylation, Bacillus cereus, Bacterial Proteins, Chromatography, High Pressure Liquid, DNA, DNA Adducts, DNA Damage, DNA Repair, Humans, Saccharomyces cerevisiae Proteins, Salmonella typhi, Tandem Mass Spectrometry
Added March 7, 2014
1 Communities
1 Members
0 Resources
12 MeSH Terms
Safety assessment of alkyl PEG ethers as used in cosmetics.
Fiume MM, Heldreth B, Bergfeld WF, Belsito DV, Hill RA, Klaassen CD, Liebler D, Marks JG, Shank RC, Slaga TJ, Snyder PW, Andersen FA
(2012) Int J Toxicol 31: 169S-244S
MeSH Terms: Administration, Cutaneous, Alkylation, Animals, Consumer Product Safety, Cosmetics, Dermatologic Agents, Ethers, Humans, Lethal Dose 50, No-Observed-Adverse-Effect Level, Polyethylene Glycols, Skin Care, Surface-Active Agents, Toxicity Tests
Added March 20, 2014
0 Communities
1 Members
0 Resources
14 MeSH Terms
Analysis of substrate specificity of Schizosaccharomyces pombe Mag1 alkylpurine DNA glycosylase.
Adhikary S, Eichman BF
(2011) EMBO Rep 12: 1286-92
MeSH Terms: Adenine, Alkylation, Amino Acid Sequence, Binding Sites, Crystallography, X-Ray, DNA Glycosylases, DNA Repair, DNA, Fungal, Molecular Sequence Data, Nucleic Acid Conformation, Purines, Schizosaccharomyces, Schizosaccharomyces pombe Proteins, Substrate Specificity
Added March 7, 2014
1 Communities
1 Members
0 Resources
14 MeSH Terms
An unprecedented nucleic acid capture mechanism for excision of DNA damage.
Rubinson EH, Gowda AS, Spratt TE, Gold B, Eichman BF
(2010) Nature 468: 406-11
MeSH Terms: Alkylation, Bacillus cereus, Base Sequence, Biocatalysis, Crystallography, X-Ray, DNA, DNA Damage, DNA Glycosylases, DNA Repair, Hydrolysis, Models, Molecular, Nucleic Acid Conformation, Protein Binding, Solvents, Thermodynamics
Added March 7, 2014
1 Communities
1 Members
0 Resources
15 MeSH Terms