Keyword Connections

•  Ariel Deutch
•  Carlos Arteaga
•  Charles Flynn
•  Colleen Lawrence
•  H. Ruley
•  James Goldenring

•  Kathleen Gould
•  Lillian Nanney
•  Matt Luther
•  Maureen Casey
•  Richard Caprioli
•  Robbert Slebos

•  Robert Beauchamp
•  Robert Matusik
•  Sandra Zinkel
•  Stephen Hann
•  Walter Chazin
•  William Valentine

Resources

• No matching connections

Communities

• Goldenring Lab
• Matusik Lab
• Zinkel Lab

Publications

• Proteomic patterns of tumour subsets in non-small-cell lung cancer.
  Yanagisawa K, Shyr Y, Xu BJ, Massion PP, Larsen PH, White BC, Roberts JR, Edgerton M, Gonzalez A, Nadaf S, Moore JH, Caprioli RM, Carbone DP
  (2003) Lancet 362: 433-9
• Integrated genomic and molecular characterization of cervical cancer.
  Cancer Genome Atlas Research Network, Albert Einstein College of Medicine, Analytical Biological Services, Barretos Cancer Hospital, Baylor College of Medicine, Beckman Research Institute of City of Hope, Buck Institute for Research on Aging, Canada's Michael Smith Genome Sciences Centre, Harvard Medical School, Helen F. Graham Cancer Center &Research Institute at Christiana Care Health Services, HudsonAlpha Institute for Biotechnology, ILSbio, LLC, Indiana University School of Medicine, Institute of Human Virology, Institute for Systems Biology, International Genomics Consortium, Leidos Biomedical, Massachusetts General Hospital, McDonnell Genome Institute at Washington University, Medical College of Wisconsin, Medical University of South Carolina, Memorial Sloan Kettering Cancer Center, Montefiore Medical Center, NantOmics, National Cancer Institute, National Hospital, Abuja, Nigeria, National Human Genome Research Institute, National Institute of Environmental Health Sciences, National Institute on Deafness &Other Communication Disorders, Ontario Tumour Bank, London Health Sciences Centre, Ontario Tumour Bank, Ontario Institute for Cancer Research, Ontario Tumour Bank, The Ottawa Hospital, Oregon Health &Science University, Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, SRA International, St Joseph's Candler Health System, Eli &Edythe L. Broad Institute of Massachusetts Institute of Technology &Harvard University, Research Institute at Nationwide Children's Hospital, Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins University, University of Bergen, University of Texas MD Anderson Cancer Center, University of Abuja Teaching Hospital, University of Alabama at Birmingham, University of California, Irvine, University of California Santa Cruz, University of Kansas Medical Center, University of Lausanne, University of New Mexico Health Sciences Center, University of North Carolina at Chapel Hill, University of Oklahoma Health Sciences Center, University of Pittsburgh, University of São Paulo, Ribeir ão Preto Medical School, University of Southern California, University of Washington, University of Wisconsin School of Medicine &Public Health, Van Andel Research Institute, Washington University in St Louis
  (2017) Nature 543: 378-384
• Comprehensive molecular portraits of human breast tumours.
  Cancer Genome Atlas Network
  (2012) Nature 490: 61-70
• A proteomic view of the Plasmodium falciparum life cycle.
  Florens L, Washburn MP, Raine JD, Anthony RM, Grainger M, Haynes JD, Moch JK, Muster N, Sacci JB, Tabb DL, Witney AA, Wolters D, Wu Y, Gardner MJ, Holder AA, Sinden RE, Yates JR, Carucci DJ
  (2002) Nature 419: 520-6
• Comprehensive molecular characterization of gastric adenocarcinoma.
  Cancer Genome Atlas Research Network
  (2014) Nature 513: 202-9
• Proteogenomic characterization of human colon and rectal cancer.
  Zhang B, Wang J, Wang X, Zhu J, Liu Q, Shi Z, Chambers MC, Zimmerman LJ, Shaddox KF, Kim S, Davies SR, Wang S, Wang P, Kinsinger CR, Rivers RC, Rodriguez H, Townsend RR, Ellis MJ, Carr SA, Tabb DL, Coffey RJ, Slebos RJ, Liebler DC, NCI CPTAC
  (2014) Nature 513: 382-7
• The search for new cardiovascular biomarkers.
  Gerszten RE, Wang TJ
  (2008) Nature 451: 949-52
• Molecular imaging by mass spectrometry--looking beyond classical histology.
  Schwamborn K, Caprioli RM
  (2010) Nat Rev Cancer 10: 639-46
• Mapping normal and cancer cell signalling networks: towards single-cell proteomics.
  Irish JM, Kotecha N, Nolan GP
  (2006) Nat Rev Cancer 6: 146-55
• Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma.
  Addona TA, Abbatiello SE, Schilling B, Skates SJ, Mani DR, Bunk DM, Spiegelman CH, Zimmerman LJ, Ham AJ, Keshishian H, Hall SC, Allen S, Blackman RK, Borchers CH, Buck C, Cardasis HL, Cusack MP, Dodder NG, Gibson BW, Held JM, Hiltke T, Jackson A, Johansen EB, Kinsinger CR, Li J, Mesri M, Neubert TA, Niles RK, Pulsipher TC, Ransohoff D, Rodriguez H, Rudnick PA, Smith D, Tabb DL, Tegeler TJ, Variyath AM, Vega-Montoto LJ, Wahlander A, Waldemarson S, Wang M, Whiteaker JR, Zhao L, Anderson NL, Fisher SJ, Liebler DC, Paulovich AG, Regnier FE, Tempst P, Carr SA
  (2009) Nat Biotechnol 27: 633-41
• A cross-platform toolkit for mass spectrometry and proteomics.
  Chambers MC, Maclean B, Burke R, Amodei D, Ruderman DL, Neumann S, Gatto L, Fischer B, Pratt B, Egertson J, Hoff K, Kessner D, Tasman N, Shulman N, Frewen B, Baker TA, Brusniak MY, Paulse C, Creasy D, Flashner L, Kani K, Moulding C, Seymour SL, Nuwaysir LM, Lefebvre B, Kuhlmann F, Roark J, Rainer P, Detlev S, Hemenway T, Huhmer A, Langridge J, Connolly B, Chadick T, Holly K, Eckels J, Deutsch EW, Moritz RL, Katz JE, Agus DB, MacCoss M, Tabb DL, Mallick P
  (2012) Nat Biotechnol 30: 918-20
• The pros and cons of peptide-centric proteomics.
  Duncan MW, Aebersold R, Caprioli RM
  (2010) Nat Biotechnol 28: 659-64
• Simple, Scalable Proteomic Imaging for High-Dimensional Profiling of Intact Systems.
  Murray E, Cho JH, Goodwin D, Ku T, Swaney J, Kim SY, Choi H, Park YG, Park JY, Hubbert A, McCue M, Vassallo S, Bakh N, Frosch MP, Wedeen VJ, Seung HS, Chung K
  (2015) Cell 163: 1500-14
• Global analysis of protein activities using proteome chips.
  Zhu H, Bilgin M, Bangham R, Hall D, Casamayor A, Bertone P, Lan N, Jansen R, Bidlingmaier S, Houfek T, Mitchell T, Miller P, Dean RA, Gerstein M, Snyder M
  (2001) Science 293: 2101-5
• Integrated Genomic Characterization of Pancreatic Ductal Adenocarcinoma.
  Cancer Genome Atlas Research Network. Electronic address: andrew_aguirre@dfci.harvard.edu, Cancer Genome Atlas Research Network
  (2017) Cancer Cell 32: 185-203.e13
• MALDI imaging mass spectrometry: molecular snapshots of biochemical systems.
  Cornett DS, Reyzer ML, Chaurand P, Caprioli RM
  (2007) Nat Methods 4: 828-33
• Shotgun mass spec goes independent.
  Liebler DC
  (2004) Nat Methods 1: 16-7
• Spin filter-based sample preparation for shotgun proteomics.
  Liebler DC, Ham AJ
  (2009) Nat Methods 6: 785; author reply 785-6
• Integrating spatially resolved three-dimensional MALDI IMS with in vivo magnetic resonance imaging.
  Sinha TK, Khatib-Shahidi S, Yankeelov TE, Mapara K, Ehtesham M, Cornett DS, Dawant BM, Caprioli RM, Gore JC
  (2008) Nat Methods 5: 57-9
• Evaluating protein interactions through cross-linking mass spectrometry.
  Tabb DL
  (2012) Nat Methods 9: 879-81
• NetGestalt: integrating multidimensional omics data over biological networks.
  Shi Z, Wang J, Zhang B
  (2013) Nat Methods 10: 597-8
• Genotype tunes pancreatic ductal adenocarcinoma tissue tension to induce matricellular fibrosis and tumor progression.
  Laklai H, Miroshnikova YA, Pickup MW, Collisson EA, Kim GE, Barrett AS, Hill RC, Lakins JN, Schlaepfer DD, Mouw JK, LeBleu VS, Roy N, Novitskiy SV, Johansen JS, Poli V, Kalluri R, Iacobuzio-Donahue CA, Wood LD, Hebrok M, Hansen K, Moses HL, Weaver VM
  (2016) Nat Med 22: 497-505
• Systems analysis of protein modification and cellular responses induced by electrophile stress.
  Jacobs AT, Marnett LJ
  (2010) Acc Chem Res 43: 673-83
• ETAA1 acts at stalled replication forks to maintain genome integrity.
  Bass TE, Luzwick JW, Kavanaugh G, Carroll C, Dungrawala H, Glick GG, Feldkamp MD, Putney R, Chazin WJ, Cortez D
  (2016) Nat Cell Biol 18: 1185-1195
• Assigning function to yeast proteins by integration of technologies.
  Hazbun TR, Malmström L, Anderson S, Graczyk BJ, Fox B, Riffle M, Sundin BA, Aranda JD, McDonald WH, Chiu CH, Snydsman BE, Bradley P, Muller EG, Fields S, Baker D, Yates JR, Davis TN
  (2003) Mol Cell 12: 1353-65
• Probing the Virtual Proteome to Identify Novel Disease Biomarkers.
  Mosley JD, Benson MD, Smith JG, Melander O, Ngo D, Shaffer CM, Ferguson JF, Herzig MS, McCarty CA, Chute CG, Jarvik GP, Gordon AS, Palmer MR, Crosslin DR, Larson EB, Carrell DS, Kullo IJ, Pacheco JA, Peissig PL, Brilliant MH, Kitchner TE, Linneman JG, Namjou B, Williams MS, Ritchie MD, Borthwick KM, Kiryluk K, Mentch FD, Sleiman PM, Karlson EW, Verma SS, Zhu Y, Vasan RS, Yang Q, Denny JC, Roden DM, Gerszten RE, Wang TJ
  (2018) Circulation 138: 2469-2481
• Modulation of behavioral networks by selective interneuronal inactivation.
  Schmidt MJ, Horvath S, Ebert P, Norris JL, Seeley EH, Brown J, Gellert L, Everheart M, Garbett KA, Grice TW, Caprioli RM, Mirnics K
  (2014) Mol Psychiatry 19: 580-7
• Alpha-2 macroglobulin in Alzheimer's disease: a marker of neuronal injury through the RCAN1 pathway.
  Varma VR, Varma S, An Y, Hohman TJ, Seddighi S, Casanova R, Beri A, Dammer EB, Seyfried NT, Pletnikova O, Moghekar A, Wilson MR, Lah JJ, O'Brien RJ, Levey AI, Troncoso JC, Albert MS, Thambisetty M
  (2017) Mol Psychiatry 22: 13-23
• Mass spectrometry to classify non-small-cell lung cancer patients for clinical outcome after treatment with epidermal growth factor receptor tyrosine kinase inhibitors: a multicohort cross-institutional study.
  Taguchi F, Solomon B, Gregorc V, Roder H, Gray R, Kasahara K, Nishio M, Brahmer J, Spreafico A, Ludovini V, Massion PP, Dziadziuszko R, Schiller J, Grigorieva J, Tsypin M, Hunsucker SW, Caprioli R, Duncan MW, Hirsch FR, Bunn PA, Carbone DP
  (2007) J Natl Cancer Inst 99: 838-46
• Accelerating Biomarker Discovery Through Electronic Health Records, Automated Biobanking, and Proteomics.
  Wells QS, Gupta DK, Smith JG, Collins SP, Storrow AB, Ferguson J, Smith ML, Pulley JM, Collier S, Wang X, Roden DM, Gerszten RE, Wang TJ
  (2019) J Am Coll Cardiol 73: 2195-2205
• Colorectal Cancer Cell Line Proteomes Are Representative of Primary Tumors and Predict Drug Sensitivity.
  Wang J, Mouradov D, Wang X, Jorissen RN, Chambers MC, Zimmerman LJ, Vasaikar S, Love CG, Li S, Lowes K, Leuchowius KJ, Jousset H, Weinstock J, Yau C, Mariadason J, Shi Z, Ban Y, Chen X, Coffey RJC, Slebos RJC, Burgess AW, Liebler DC, Zhang B, Sieber OM
  (2017) Gastroenterology 153: 1082-1095
• Systematic identification and functional screens of uncharacterized proteins associated with eukaryotic ribosomal complexes.
  Fleischer TC, Weaver CM, McAfee KJ, Jennings JL, Link AJ
  (2006) Genes Dev 20: 1294-307
• Shotgun proteomics: identification of unique protein profiles of apoptotic bodies from biliary epithelial cells.
  Lleo A, Zhang W, McDonald WH, Seeley EH, Leung PS, Coppel RL, Ansari AA, Adams DH, Afford S, Invernizzi P, Gershwin ME
  (2014) Hepatology 60: 1314-23