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Creative Data Solutions (CDS) is a Vanderbilt Shared Resource and has extensive experience in providing effective and robust solutions to challenges pertaining to research data using modern informatics and bioinformatics approaches.
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Connections to Caenorhabditis are shown below. Double-click or tap a node for more information.
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- C. elegans unc-4 gene encodes a homeodomain protein that determines the pattern of synaptic input to specific motor neurons.
Miller DM, Shen MM, Shamu CE, Bürglin TR, Ruvkun G, Dubois ML, Ghee M, Wilson L
(1992) Nature 355: 841-5 - A stomatin-like protein necessary for mechanosensation in C. elegans.
Huang M, Gu G, Ferguson EL, Chalfie M
(1995) Nature 378: 292-5 - Comparative analysis of the transcriptome across distant species.
Gerstein MB, Rozowsky J, Yan KK, Wang D, Cheng C, Brown JB, Davis CA, Hillier L, Sisu C, Li JJ, Pei B, Harmanci AO, Duff MO, Djebali S, Alexander RP, Alver BH, Auerbach R, Bell K, Bickel PJ, Boeck ME, Boley NP, Booth BW, Cherbas L, Cherbas P, Di C, Dobin A, Drenkow J, Ewing B, Fang G, Fastuca M, Feingold EA, Frankish A, Gao G, Good PJ, Guigó R, Hammonds A, Harrow J, Hoskins RA, Howald C, Hu L, Huang H, Hubbard TJ, Huynh C, Jha S, Kasper D, Kato M, Kaufman TC, Kitchen RR, Ladewig E, Lagarde J, Lai E, Leng J, Lu Z, MacCoss M, May G, McWhirter R, Merrihew G, Miller DM, Mortazavi A, Murad R, Oliver B, Olson S, Park PJ, Pazin MJ, Perrimon N, Pervouchine D, Reinke V, Reymond A, Robinson G, Samsonova A, Saunders GI, Schlesinger F, Sethi A, Slack FJ, Spencer WC, Stoiber MH, Strasbourger P, Tanzer A, Thompson OA, Wan KH, Wang G, Wang H, Watkins KL, Wen J, Wen K, Xue C, Yang L, Yip K, Zaleski C, Zhang Y, Zheng H, Brenner SE, Graveley BR, Celniker SE, Gingeras TR, Waterston R
(2014) Nature 512: 445-8 - Neurite extension: starting at the finish line.
Patel MR, Shen K
(2009) Cell 137: 207-9 - Neurosensory perception of environmental cues modulates sperm motility critical for fertilization.
McKnight K, Hoang HD, Prasain JK, Brown N, Vibbert J, Hollister KA, Moore R, Ragains JR, Reese J, Miller MA
(2014) Science 344: 754-7 - RSY-1 is a local inhibitor of presynaptic assembly in C. elegans.
Patel MR, Shen K
(2009) Science 323: 1500-3 - Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.
Gerstein MB, Lu ZJ, Van Nostrand EL, Cheng C, Arshinoff BI, Liu T, Yip KY, Robilotto R, Rechtsteiner A, Ikegami K, Alves P, Chateigner A, Perry M, Morris M, Auerbach RK, Feng X, Leng J, Vielle A, Niu W, Rhrissorrakrai K, Agarwal A, Alexander RP, Barber G, Brdlik CM, Brennan J, Brouillet JJ, Carr A, Cheung MS, Clawson H, Contrino S, Dannenberg LO, Dernburg AF, Desai A, Dick L, Dosé AC, Du J, Egelhofer T, Ercan S, Euskirchen G, Ewing B, Feingold EA, Gassmann R, Good PJ, Green P, Gullier F, Gutwein M, Guyer MS, Habegger L, Han T, Henikoff JG, Henz SR, Hinrichs A, Holster H, Hyman T, Iniguez AL, Janette J, Jensen M, Kato M, Kent WJ, Kephart E, Khivansara V, Khurana E, Kim JK, Kolasinska-Zwierz P, Lai EC, Latorre I, Leahey A, Lewis S, Lloyd P, Lochovsky L, Lowdon RF, Lubling Y, Lyne R, MacCoss M, Mackowiak SD, Mangone M, McKay S, Mecenas D, Merrihew G, Miller DM, Muroyama A, Murray JI, Ooi SL, Pham H, Phippen T, Preston EA, Rajewsky N, Rätsch G, Rosenbaum H, Rozowsky J, Rutherford K, Ruzanov P, Sarov M, Sasidharan R, Sboner A, Scheid P, Segal E, Shin H, Shou C, Slack FJ, Slightam C, Smith R, Spencer WC, Stinson EO, Taing S, Takasaki T, Vafeados D, Voronina K, Wang G, Washington NL, Whittle CM, Wu B, Yan KK, Zeller G, Zha Z, Zhong M, Zhou X, modENCODE Consortium, Ahringer J, Strome S, Gunsalus KC, Micklem G, Liu XS, Reinke V, Kim SK, Hillier LW, Henikoff S, Piano F, Snyder M, Stein L, Lieb JD, Waterston RH
(2010) Science 330: 1775-87 - Neuroscience. Synapses here and not everywhere.
Miller DM
(2007) Science 317: 907-8 - A sperm cytoskeletal protein that signals oocyte meiotic maturation and ovulation.
Miller MA, Nguyen VQ, Lee MH, Kosinski M, Schedl T, Caprioli RM, Greenstein D
(2001) Science 291: 2144-7 - Shotgun mass spec goes independent.
Liebler DC
(2004) Nat Methods 1: 16-7 - The Caenorhabditis elegans dopaminergic system: opportunities for insights into dopamine transport and neurodegeneration.
Nass R, Blakely RD
(2003) Annu Rev Pharmacol Toxicol 43: 521-44 - Extracellular proteins needed for C. elegans mechanosensation.
Du H, Gu G, William CM, Chalfie M
(1996) Neuron 16: 183-94 - Extracellular proteins organize the mechanosensory channel complex in C. elegans touch receptor neurons.
Emtage L, Gu G, Hartwieg E, Chalfie M
(2004) Neuron 44: 795-807 - Imaging synaptic activity in intact brain and slices with FM1-43 in C. elegans, lamprey, and rat.
Kay AR, Alfonso A, Alford S, Cline HT, Holgado AM, Sakmann B, Snitsarev VA, Stricker TP, Takahashi M, Wu LG
(1999) Neuron 24: 809-17 - The CeNGEN Project: The Complete Gene Expression Map of an Entire Nervous System.
Hammarlund M, Hobert O, Miller DM, Sestan N
(2018) Neuron 99: 430-433 - A primary culture system for functional analysis of C. elegans neurons and muscle cells.
Christensen M, Estevez A, Yin X, Fox R, Morrison R, McDonnell M, Gleason C, Miller DM, Strange K
(2002) Neuron 33: 503-14 - Sensory neuron fates are distinguished by a transcriptional switch that regulates dendrite branch stabilization.
Smith CJ, O'Brien T, Chatzigeorgiou M, Spencer WC, Feingold-Link E, Husson SJ, Hori S, Mitani S, Gottschalk A, Schafer WR, Miller DM
(2013) Neuron 79: 266-80 - Netrin (UNC-6) mediates dendritic self-avoidance.
Smith CJ, Watson JD, VanHoven MK, Colón-Ramos DA, Miller DM
(2012) Nat Neurosci 15: 731-7 - Specific roles for DEG/ENaC and TRP channels in touch and thermosensation in C. elegans nociceptors.
Chatzigeorgiou M, Yoo S, Watson JD, Lee WH, Spencer WC, Kindt KS, Hwang SW, Miller DM, Treinin M, Driscoll M, Schafer WR
(2010) Nat Neurosci 13: 861-8 - NAB-1 instructs synapse assembly by linking adhesion molecules and F-actin to active zone proteins.
Chia PH, Patel MR, Shen K
(2012) Nat Neurosci 15: 234-42 - Hierarchical assembly of presynaptic components in defined C. elegans synapses.
Patel MR, Lehrman EK, Poon VY, Crump JG, Zhen M, Bargmann CI, Shen K
(2006) Nat Neurosci 9: 1488-98 - Regulation of C. elegans fat uptake and storage by acyl-CoA synthase-3 is dependent on NR5A family nuclear hormone receptor nhr-25.
Mullaney BC, Blind RD, Lemieux GA, Perez CL, Elle IC, Faergeman NJ, Van Gilst MR, Ingraham HA, Ashrafi K
(2010) Cell Metab 12: 398-410 - Homeostatic Responses Regulate Selfish Mitochondrial Genome Dynamics in C. elegans.
Gitschlag BL, Kirby CS, Samuels DC, Gangula RD, Mallal SA, Patel MR
(2016) Cell Metab 24: 91-103 - A spatial and temporal map of C. elegans gene expression.
Spencer WC, Zeller G, Watson JD, Henz SR, Watkins KL, McWhirter RD, Petersen S, Sreedharan VT, Widmer C, Jo J, Reinke V, Petrella L, Strome S, Von Stetina SE, Katz M, Shaham S, Rätsch G, Miller DM
(2011) Genome Res 21: 325-41 - A Dendritic Guidance Receptor Complex Brings Together Distinct Actin Regulators to Drive Efficient F-Actin Assembly and Branching.
Zou W, Dong X, Broederdorf TR, Shen A, Kramer DA, Shi R, Liang X, Miller DM, Xiang YK, Yasuda R, Chen B, Shen K
(2018) Dev Cell 45: 362-375.e3 - The PAR proteins: fundamental players in animal cell polarization.
Goldstein B, Macara IG
(2007) Dev Cell 13: 609-622
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