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Creative Data Solutions (CDS) is a Vanderbilt Shared Resource and has extensive experience in providing effective and robust solutions to challenges pertaining to research data using modern informatics and bioinformatics approaches.
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Publications
- Cloning and structure of a yeast gene encoding a general transcription initiation factor TFIID that binds to the TATA box.
Horikoshi M, Wang CK, Fujii H, Cromlish JA, Weil PA, Roeder RG
(1989) Nature 341: 299-303 - Gal4 turnover and transcription activation.
Collins GA, Lipford JR, Deshaies RJ, Tansey WP
(2009) Nature 461: E7; discussion E8 - Nucleosome organization in the Drosophila genome.
Mavrich TN, Jiang C, Ioshikhes IP, Li X, Venters BJ, Zanton SJ, Tomsho LP, Qi J, Glaser RL, Schuster SC, Gilmour DS, Albert I, Pugh BF
(2008) Nature 453: 358-62 - TBP-associated factors are not generally required for transcriptional activation in yeast.
Moqtaderi Z, Bai Y, Poon D, Weil PA, Struhl K
(1996) Nature 383: 188-91 - Tyrosine phosphorylation of the fission yeast cdc2+ protein kinase regulates entry into mitosis.
Gould KL, Nurse P
(1989) Nature 342: 39-45 - An RNA-export mediator with an essential nuclear export signal.
Murphy R, Wente SR
(1996) Nature 383: 357-60 - TFIIA and the transactivator Rap1 cooperate to commit TFIID for transcription initiation.
Papai G, Tripathi MK, Ruhlmann C, Layer JH, Weil PA, Schultz P
(2010) Nature 465: 956-60 - Pif1 family helicases suppress genome instability at G-quadruplex motifs.
Paeschke K, Bochman ML, Garcia PD, Cejka P, Friedman KL, Kowalczykowski SC, Zakian VA
(2013) Nature 497: 458-62 - Inferring ancient divergences requires genes with strong phylogenetic signals.
Salichos L, Rokas A
(2013) Nature 497: 327-31 - Cadmium is a mutagen that acts by inhibiting mismatch repair.
Jin YH, Clark AB, Slebos RJ, Al-Refai H, Taylor JA, Kunkel TA, Resnick MA, Gordenin DA
(2003) Nat Genet 34: 326-9 - Direct analysis of protein complexes using mass spectrometry.
Link AJ, Eng J, Schieltz DM, Carmack E, Mize GJ, Morris DR, Garvik BM, Yates JR
(1999) Nat Biotechnol 17: 676-82 - Transcription of two long noncoding RNAs mediates mating-type control of gametogenesis in budding yeast.
van Werven FJ, Neuert G, Hendrick N, Lardenois A, Buratowski S, van Oudenaarden A, Primig M, Amon A
(2012) Cell 150: 1170-81 - The proteasome regulatory particle alters the SAGA coactivator to enhance its interactions with transcriptional activators.
Lee D, Ezhkova E, Li B, Pattenden SG, Tansey WP, Workman JL
(2005) Cell 123: 423-36 - Gle1 functions during mRNA export in an oligomeric complex that is altered in human disease.
Folkmann AW, Collier SE, Zhan X, Aditi , Ohi MD, Wente SR
(2013) Cell 155: 582-93 - The mRNA export factor Gle1 and inositol hexakisphosphate regulate distinct stages of translation.
Bolger TA, Folkmann AW, Tran EJ, Wente SR
(2008) Cell 134: 624-33 - Cln3 activates G1-specific transcription via phosphorylation of the SBF bound repressor Whi5.
de Bruin RA, McDonald WH, Kalashnikova TI, Yates J, Wittenberg C
(2004) Cell 117: 887-98 - Analysis of structure-function relationships of yeast TATA box binding factor TFIID.
Horikoshi M, Yamamoto T, Ohkuma Y, Weil PA, Roeder RG
(1990) Cell 61: 1171-8 - Mus81-Eme1 are essential components of a Holliday junction resolvase.
Boddy MN, Gaillard PHL, McDonald WH, Shanahan P, Yates JR, Russell P
(2001) Cell 107: 537-48 - DNA replication through G-quadruplex motifs is promoted by the Saccharomyces cerevisiae Pif1 DNA helicase.
Paeschke K, Capra JA, Zakian VA
(2011) Cell 145: 678-91 - The F box protein Dsg1/Mdm30 is a transcriptional coactivator that stimulates Gal4 turnover and cotranscriptional mRNA processing.
Muratani M, Kung C, Shokat KM, Tansey WP
(2005) Cell 120: 887-99 - Structural basis for the recognition of DNA repair proteins UNG2, XPA, and RAD52 by replication factor RPA.
Mer G, Bochkarev A, Gupta R, Bochkareva E, Frappier L, Ingles CJ, Edwards AM, Chazin WJ
(2000) Cell 103: 449-56 - Gatekeepers of the nucleus.
Wente SR
(2000) Science 288: 1374-7 - Regulation of transcriptional activation domain function by ubiquitin.
Salghetti SE, Caudy AA, Chenoweth JG, Tansey WP
(2001) Science 293: 1651-3 - Regulation of chromatin remodeling by inositol polyphosphates.
Steger DJ, Haswell ES, Miller AL, Wente SR, O'Shea EK
(2003) Science 299: 114-6 - A phospholipase C-dependent inositol polyphosphate kinase pathway required for efficient messenger RNA export.
York JD, Odom AR, Murphy R, Ives EB, Wente SR
(1999) Science 285: 96-100 - Systematic identification of signal-activated stochastic gene regulation.
Neuert G, Munsky B, Tan RZ, Teytelman L, Khammash M, van Oudenaarden A
(2013) Science 339: 584-7 - Global analysis of protein activities using proteome chips.
Zhu H, Bilgin M, Bangham R, Hall D, Casamayor A, Bertone P, Lan N, Jansen R, Bidlingmaier S, Houfek T, Mitchell T, Miller P, Dean RA, Gerstein M, Snyder M
(2001) Science 293: 2101-5
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