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Creative Data Solutions (CDS) is a Vanderbilt Shared Resource and has extensive experience in providing effective and robust solutions to challenges pertaining to research data using modern informatics and bioinformatics approaches.
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Publications
- Telomerase mutations in families with idiopathic pulmonary fibrosis.
Armanios MY, Chen JJ, Cogan JD, Alder JK, Ingersoll RG, Markin C, Lawson WE, Xie M, Vulto I, Phillips JA, Lansdorp PM, Greider CW, Loyd JE
(2007) N Engl J Med 356: 1317-26 - Mutations in kelch-like 3 and cullin 3 cause hypertension and electrolyte abnormalities.
Boyden LM, Choi M, Choate KA, Nelson-Williams CJ, Farhi A, Toka HR, Tikhonova IR, Bjornson R, Mane SM, Colussi G, Lebel M, Gordon RD, Semmekrot BA, Poujol A, Välimäki MJ, De Ferrari ME, Sanjad SA, Gutkin M, Karet FE, Tucci JR, Stockigt JR, Keppler-Noreuil KM, Porter CC, Anand SK, Whiteford ML, Davis ID, Dewar SB, Bettinelli A, Fadrowski JJ, Belsha CW, Hunley TE, Nelson RD, Trachtman H, Cole TR, Pinsk M, Bockenhauer D, Shenoy M, Vaidyanathan P, Foreman JW, Rasoulpour M, Thameem F, Al-Shahrouri HZ, Radhakrishnan J, Gharavi AG, Goilav B, Lifton RP
(2012) Nature 482: 98-102 - Obesity-associated variants within FTO form long-range functional connections with IRX3.
Smemo S, Tena JJ, Kim KH, Gamazon ER, Sakabe NJ, Gómez-Marín C, Aneas I, Credidio FL, Sobreira DR, Wasserman NF, Lee JH, Puviindran V, Tam D, Shen M, Son JE, Vakili NA, Sung HK, Naranjo S, Acemel RD, Manzanares M, Nagy A, Cox NJ, Hui CC, Gomez-Skarmeta JL, Nóbrega MA
(2014) Nature 507: 371-5 - The Sox10(Dom) mouse: modeling the genetic variation of Waardenburg-Shah (WS4) syndrome.
Southard-Smith EM, Angrist M, Ellison JS, Agarwala R, Baxevanis AD, Chakravarti A, Pavan WJ
(1999) Genome Res 9: 215-25 - A large-scale insertional mutagenesis screen in zebrafish.
Amsterdam A, Burgess S, Golling G, Chen W, Sun Z, Townsend K, Farrington S, Haldi M, Hopkins N
(1999) Genes Dev 13: 2713-24 - Novel role of gp91(phox)-containing NAD(P)H oxidase in vascular endothelial growth factor-induced signaling and angiogenesis.
Ushio-Fukai M, Tang Y, Fukai T, Dikalov SI, Ma Y, Fujimoto M, Quinn MT, Pagano PJ, Johnson C, Alexander RW
(2002) Circ Res 91: 1160-7 - Genetic anticipation and abnormal gender ratio at birth in familial primary pulmonary hypertension.
Loyd JE, Butler MG, Foroud TM, Conneally PM, Phillips JA, Newman JH
(1995) Am J Respir Crit Care Med 152: 93-7 - Apical recycling systems regulate directional budding of respiratory syncytial virus from polarized epithelial cells.
Brock SC, Goldenring JR, Crowe JE
(2003) Proc Natl Acad Sci U S A 100: 15143-8 - Dominant factor XI deficiency caused by mutations in the factor XI catalytic domain.
Kravtsov DV, Wu W, Meijers JC, Sun MF, Blinder MA, Dang TP, Wang H, Gailani D
(2004) Blood 104: 128-34 - A classification system for cross-reactive material-negative factor XI deficiency.
Kravtsov DV, Monahan PE, Gailani D
(2005) Blood 105: 4671-3 - A sensitized screen of N-ethyl-N-nitrosourea-mutagenized mice identifies dominant mutants predisposed to diabetic nephropathy.
Tchekneva EE, Rinchik EM, Polosukhina D, Davis LS, Kadkina V, Mohamed Y, Dunn SR, Sharma K, Qi Z, Fogo AB, Breyer MD
(2007) J Am Soc Nephrol 18: 103-12 - Evaluation of the alpha(2A)-adrenergic receptor gene in a heritable form of temporal lobe epilepsy.
Wilson MH, Puranam RS, Ottman R, Gilliam C, Limbird LE, George AL, McNamara JO
(1998) Neurology 51: 1730-1 - Trimethoprim-sulfamethoxazole in cyst fluid from autosomal dominant polycystic kidneys.
Elzinga LW, Golper TA, Rashad AL, Carr ME, Bennett WM
(1987) Kidney Int 32: 884-8 - Interactions between Sox10 and EdnrB modulate penetrance and severity of aganglionosis in the Sox10Dom mouse model of Hirschsprung disease.
Cantrell VA, Owens SE, Chandler RL, Airey DC, Bradley KM, Smith JR, Southard-Smith EM
(2004) Hum Mol Genet 13: 2289-301 - Attenuation of the beta-catenin/TCF4 complex in colorectal cancer cells induces several growth-suppressive microRNAs that target cancer promoting genes.
Schepeler T, Holm A, Halvey P, Nordentoft I, Lamy P, Riising EM, Christensen LL, Thorsen K, Liebler DC, Helin K, Ørntoft TF, Andersen CL
(2012) Oncogene 31: 2750-60 - A mutation in the human norepinephrine transporter gene (SLC6A2) associated with orthostatic intolerance disrupts surface expression of mutant and wild-type transporters.
Hahn MK, Robertson D, Blakely RD
(2003) J Neurosci 23: 4470-8 - Altered responsiveness to cocaine and increased immobility in the forced swim test associated with elevated cAMP response element-binding protein expression in nucleus accumbens.
Pliakas AM, Carlson RR, Neve RL, Konradi C, Nestler EJ, Carlezon WA
(2001) J Neurosci 21: 7397-403 - A microdeletion in the ligand binding domain of human steroidogenic factor 1 causes XY sex reversal without adrenal insufficiency.
Correa RV, Domenice S, Bingham NC, Billerbeck AE, Rainey WE, Parker KL, Mendonca BB
(2004) J Clin Endocrinol Metab 89: 1767-72 - Regulation of cadherin stability and turnover by p120ctn: implications in disease and cancer.
Reynolds AB, Carnahan RH
(2004) Semin Cell Dev Biol 15: 657-63 - EphA2 receptor tyrosine kinase regulates endothelial cell migration and vascular assembly through phosphoinositide 3-kinase-mediated Rac1 GTPase activation.
Brantley-Sieders DM, Caughron J, Hicks D, Pozzi A, Ruiz JC, Chen J
(2004) J Cell Sci 117: 2037-49 - Cooperative signaling between Slit2 and Ephrin-A1 regulates a balance between angiogenesis and angiostasis.
Dunaway CM, Hwang Y, Lindsley CW, Cook RS, Wu JY, Boothby M, Chen J, Brantley-Sieders DM
(2011) Mol Cell Biol 31: 404-16 - A dominant negative allele of p34cdc2 shows altered phosphoamino acid content and sequesters p56cdc13 cyclin.
Fleig UN, Gould KL, Nurse P
(1992) Mol Cell Biol 12: 2295-301 - Analysis of human cell heterokaryons demonstrates that target cell restriction of cyclosporine-resistant human immunodeficiency virus type 1 mutants is genetically dominant.
Song C, Aiken C
(2007) J Virol 81: 11946-56 - Neurotoxic unc-8 mutants encode constitutively active DEG/ENaC channels that are blocked by divalent cations.
Wang Y, Matthewman C, Han L, Miller T, Miller DM, Bianchi L
(2013) J Gen Physiol 142: 157-69 - Type I transforming growth factor beta receptor binds to and activates phosphatidylinositol 3-kinase.
Yi JY, Shin I, Arteaga CL
(2005) J Biol Chem 280: 10870-6 - Integrin alpha6beta4-erbB2 complex inhibits haptotaxis by up-regulating E-cadherin cell-cell junctions in keratinocytes.
Hintermann E, Yang N, O'Sullivan D, Higgins JM, Quaranta V
(2005) J Biol Chem 280: 8004-15 - Helicobacter pylori-induced macrophage apoptosis requires activation of ornithine decarboxylase by c-Myc.
Cheng Y, Chaturvedi R, Asim M, Bussière FI, Scholz A, Xu H, Casero RA, Wilson KT
(2005) J Biol Chem 280: 22492-6 - Transcriptional cross-talk between Smad, ERK1/2, and p38 mitogen-activated protein kinase pathways regulates transforming growth factor-beta-induced aggrecan gene expression in chondrogenic ATDC5 cells.
Watanabe H, de Caestecker MP, Yamada Y
(2001) J Biol Chem 276: 14466-73 - Smad4-dependent regulation of urokinase plasminogen activator secretion and RNA stability associated with invasiveness by autocrine and paracrine transforming growth factor-beta.
Shiou SR, Datta PK, Dhawan P, Law BK, Yingling JM, Dixon DA, Beauchamp RD
(2006) J Biol Chem 281: 33971-81 - Tumor necrosis factor-alpha induction of endothelial ephrin A1 expression is mediated by a p38 MAPK- and SAPK/JNK-dependent but nuclear factor-kappa B-independent mechanism.
Cheng N, Chen J
(2001) J Biol Chem 276: 13771-7 - Transforming growth factor-beta-stimulated endocardial cell transformation is dependent on Par6c regulation of RhoA.
Townsend TA, Wrana JL, Davis GE, Barnett JV
(2008) J Biol Chem 283: 13834-41 - ERK2- and p90(Rsk2)-dependent pathways regulate the CCAAT/enhancer-binding protein-beta interaction with serum response factor.
Hanlon M, Sturgill TW, Sealy L
(2001) J Biol Chem 276: 38449-56 - Identification of Src phosphorylation sites in the catenin p120ctn.
Mariner DJ, Anastasiadis P, Keilhack H, Böhmer FD, Wang J, Reynolds AB
(2001) J Biol Chem 276: 28006-13 - Integrin beta 1 signaling is necessary for transforming growth factor-beta activation of p38MAPK and epithelial plasticity.
Bhowmick NA, Zent R, Ghiassi M, McDonnell M, Moses HL
(2001) J Biol Chem 276: 46707-13 - A novel mechanism of cell killing by anti-topoisomerase II bisdioxopiperazines.
Jensen LH, Nitiss KC, Rose A, Dong J, Zhou J, Hu T, Osheroff N, Jensen PB, Sehested M, Nitiss JL
(2000) J Biol Chem 275: 2137-46 - A dominant-negative strategy for studying roles of G proteins in vivo.
Gilchrist A, Bünemann M, Li A, Hosey MM, Hamm HE
(1999) J Biol Chem 274: 6610-6 - Interactive sites in the MyD88 Toll/interleukin (IL) 1 receptor domain responsible for coupling to the IL1beta signaling pathway.
Li C, Zienkiewicz J, Hawiger J
(2005) J Biol Chem 280: 26152-9 - Clustering and redistribution of late endocytic compartments in response to Helicobacter pylori vacuolating toxin.
Li Y, Wandinger-Ness A, Goldenring JR, Cover TL
(2004) Mol Biol Cell 15: 1946-59 - Transgenic mice expressing a dominant-negative mutant type II transforming growth factor-beta receptor exhibit impaired mammary development and enhanced mammary tumor formation.
Gorska AE, Jensen RA, Shyr Y, Aakre ME, Bhowmick NA, Moses HL
(2003) Am J Pathol 163: 1539-49 - Dominant unc-37 mutations suppress the movement defect of a homeodomain mutation in unc-4, a neural specificity gene in Caenorhabditis elegans.
Miller DM, Niemeyer CJ, Chitkara P
(1993) Genetics 135: 741-53
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