Cln3 activates G1-specific transcription via phosphorylation of the SBF bound repressor Whi5. de Bruin RA, McDonald WH, Kalashnikova TI, Yates J, Wittenberg C (2004) Cell 117: 887-98 A repeating amino acid motif shared by proteins with diverse cellular roles. Peifer M, Berg S, Reynolds AB (1994) Cell 76: 789-91 The autism sequencing consortium: large-scale, high-throughput sequencing in autism spectrum disorders. Buxbaum JD, Daly MJ, Devlin B, Lehner T, Roeder K, State MW, Autism Sequencing Consortium (2012) Neuron 76: 1052-6 Nkx3.1 and Myc crossregulate shared target genes in mouse and human prostate tumorigenesis. Anderson PD, McKissic SA, Logan M, Roh M, Franco OE, Wang J, Doubinskaia I, van der Meer R, Hayward SW, Eischen CM, Eltoum IE, Abdulkadir SA (2012) J Clin Invest 122: 1907-19 Dual palmitoylation of PSD-95 mediates its vesiculotubular sorting, postsynaptic targeting, and ion channel clustering. El-Husseini AE, Craven SE, Chetkovich DM, Firestein BL, Schnell E, Aoki C, Bredt DS (2000) J Cell Biol 148: 159-72 An AML-1 consensus sequence binds an osteoblast-specific complex and transcriptionally activates the osteocalcin gene. Banerjee C, Hiebert SW, Stein JL, Lian JB, Stein GS (1996) Proc Natl Acad Sci U S A 93: 4968-73 Reverse genetics with a full-length infectious cDNA of severe acute respiratory syndrome coronavirus. Yount B, Curtis KM, Fritz EA, Hensley LE, Jahrling PB, Prentice E, Denison MR, Geisbert TW, Baric RS (2003) Proc Natl Acad Sci U S A 100: 12995-3000 Carcinoma and stromal enzyme activity profiles associated with breast tumor growth in vivo. Jessani N, Humphrey M, McDonald WH, Niessen S, Masuda K, Gangadharan B, Yates JR, Mueller BM, Cravatt BF (2004) Proc Natl Acad Sci U S A 101: 13756-61 Binding of phosphorylated Sp1 protein to tandem Sp1 binding sites regulates alpha2 integrin gene core promoter activity. Zutter MM, Ryan EE, Painter AD (1997) Blood 90: 678-89 Emerging structural themes in large RNA molecules. Reiter NJ, Chan CW, Mondragón A (2011) Curr Opin Struct Biol 21: 319-26 Proapoptotic Bid mediates the Atr-directed DNA damage response to replicative stress. Liu Y, Bertram CC, Shi Q, Zinkel SS (2011) Cell Death Differ 18: 841-52 Neuroendocrine differentiation factor, IA-1, is a transcriptional repressor and contains a specific DNA-binding domain: identification of consensus IA-1 binding sequence. Breslin MB, Zhu M, Notkins AL, Lan MS (2002) Nucleic Acids Res 30: 1038-45 p63 consensus DNA-binding site: identification, analysis and application into a p63MH algorithm. Perez CA, Ott J, Mays DJ, Pietenpol JA (2007) Oncogene 26: 7363-70 ERAAP and tapasin independently edit the amino and carboxyl termini of MHC class I peptides. Kanaseki T, Lind KC, Escobar H, Nagarajan N, Reyes-Vargas E, Rudd B, Rockwood AL, Van Kaer L, Sato N, Delgado JC, Shastri N (2013) J Immunol 191: 1547-55 Catalytic function of DNA topoisomerase II. Osheroff N, Zechiedrich EL, Gale KC (1991) Bioessays 13: 269-73 Program specificity for Ptf1a in pancreas versus neural tube development correlates with distinct collaborating cofactors and chromatin accessibility. Meredith DM, Borromeo MD, Deering TG, Casey BH, Savage TK, Mayer PR, Hoang C, Tung KC, Kumar M, Shen C, Swift GH, Macdonald RJ, Johnson JE (2013) Mol Cell Biol 33: 3166-79 The t(8;21) fusion protein interferes with AML-1B-dependent transcriptional activation. Meyers S, Lenny N, Hiebert SW (1995) Mol Cell Biol 15: 1974-82 Consensus Genotyper for Exome Sequencing (CGES): improving the quality of exome variant genotypes. Trubetskoy V, Rodriguez A, Dave U, Campbell N, Crawford EL, Cook EH, Sutcliffe JS, Foster I, Madduri R, Cox NJ, Davis LK (2015) Bioinformatics 31: 187-93 PUM2, a novel murine puf protein, and its consensus RNA-binding site. White EK, Moore-Jarrett T, Ruley HE (2001) RNA 7: 1855-66 Role of the transcription start site core region and transcription factor YY1 in Rous sarcoma virus long terminal repeat promoter activity. Mobley CM, Sealy L (1998) J Virol 72: 6592-601 NFI transcription factors interact with FOXA1 to regulate prostate-specific gene expression. Grabowska MM, Elliott AD, DeGraff DJ, Anderson PD, Anumanthan G, Yamashita H, Sun Q, Friedman DB, Hachey DL, Yu X, Sheehan JH, Ahn JM, Raj GV, Piston DW, Gronostajski RM, Matusik RJ (2014) Mol Endocrinol 28: 949-64 Renin gene promoter activity in GC cells is regulated by cAMP and thyroid hormone through Pit-1-dependent mechanisms. Gilbert MT, Sun J, Yan Y, Oddoux C, Lazarus A, Tansey WP, Lavin TN, Catanzaro DF (1994) J Biol Chem 269: 28049-54 Erythropoietin stimulates transcription of the TAL1/SCL gene and phosphorylation of its protein products. Prasad KS, Jordan JE, Koury MJ, Bondurant MC, Brandt SJ (1995) J Biol Chem 270: 11603-11 High level expression in Escherichia coli and characterization of the EF-hand calcium-binding protein caltractin. Weber C, Lee VD, Chazin WJ, Huang B (1994) J Biol Chem 269: 15795-802 An enhancer element in the EphA2 (Eck) gene sufficient for rhombomere-specific expression is activated by HOXA1 and HOXB1 homeobox proteins. Chen J, Ruley HE (1998) J Biol Chem 273: 24670-5 Protein kinase A phosphorylation alters Kvbeta1.3 subunit-mediated inactivation of the Kv1.5 potassium channel. Kwak YG, Hu N, Wei J, George AL, Grobaski TD, Tamkun MM, Murray KT (1999) J Biol Chem 274: 13928-32 Interleukin 4-inducible phosphorylation of HMG-I(Y) is inhibited by rapamycin. Wang DZ, Ray P, Boothby M (1995) J Biol Chem 270: 22924-32 A blood group-related polymorphism of CD44 abolishes a hyaluronan-binding consensus sequence without preventing hyaluronan binding. Telen MJ, Udani M, Washington MK, Levesque MC, Lloyd E, Rao N (1996) J Biol Chem 271: 7147-53 Tcf binding sequence and position determines beta-catenin and Lef-1 responsiveness of MMP-7 promoters. Gustavson MD, Crawford HC, Fingleton B, Matrisian LM (2004) Mol Carcinog 41: 125-39 Cytokine-induced neutrophil chemoattractant mediates neutrophilic alveolitis in rats: association with nuclear factor kappa B activation. Blackwell TS, Holden EP, Blackwell TR, DeLarco JE, Christman JW (1994) Am J Respir Cell Mol Biol 11: 464-72 Estrogen-responsive elements contain non-B DNA. Lannigan DA, Koszewski NJ, Notides AC (1993) Mol Cell Endocrinol 94: 47-54 Cloning and functional characterization of a high-affinity Na(+)/dicarboxylate cotransporter from mouse brain. Pajor AM, Gangula R, Yao X (2001) Am J Physiol Cell Physiol 280: C1215-23 Identification of a common cytochrome P450 epitope near the conserved heme-binding petide with antibodies raised against recombinant cytochrome P450 family 2 proteins. Soucek P, Martin MV, Ueng YF, Guengerich FP (1995) Biochemistry 34: 16013-21 The tissue-specific nuclear matrix protein, NMP-2, is a member of the AML/CBF/PEBP2/runt domain transcription factor family: interactions with the osteocalcin gene promoter. Merriman HL, van Wijnen AJ, Hiebert S, Bidwell JP, Fey E, Lian J, Stein J, Stein GS (1995) Biochemistry 34: 13125-32 Three zinc finger nuclear proteins, Sp1, Sp3, and a ZBP-89 homologue, bind to the cyclic adenosine monophosphate-responsive sequence of the bovine adrenodoxin gene and regulate transcription. Cheng PY, Kagawa N, Takahashi Y, Waterman MR (2000) Biochemistry 39: 4347-57 The homeodomain protein Pbx1 is involved in cAMP-dependent transcription of human CYP17. Ogo A, Waterman MR, McAllister JM, Kagawa N (1997) Arch Biochem Biophys 348: 226-31 Mutational analysis of the vacA promoter provides insight into gene transcription in Helicobacter pylori. Forsyth MH, Cover TL (1999) J Bacteriol 181: 2261-6 High-level genetic diversity in the vapD chromosomal region of Helicobacter pylori. Cao P, Cover TL (1997) J Bacteriol 179: 2852-6 HP0333, a member of the dprA family, is involved in natural transformation in Helicobacter pylori. Ando T, Israel DA, Kusugami K, Blaser MJ (1999) J Bacteriol 181: 5572-80 Comparative analysis of the noncollagenous NC1 domain of type IV collagen: identification of structural features important for assembly, function, and pathogenesis. Netzer KO, Suzuki K, Itoh Y, Hudson BG, Khalifah RG (1998) Protein Sci 7: 1340-51
Hints: (1) double-click or double-tap to navigate to a node. (2) Grab a node and move it to arrange the graph.