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Creative Data Solutions (CDS) is a Vanderbilt Shared Resource and has extensive experience in providing effective and robust solutions to challenges pertaining to research data using modern informatics and bioinformatics approaches.
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Publications
- Purification of an allene oxide synthase and identification of the enzyme as a cytochrome P-450.
Song WC, Brash AR
(1991) Science 253: 781-4 - Modulation of QT interval during autonomic nervous system blockade in humans.
Diedrich A, Jordan J, Shannon JR, Robertson D, Biaggioni I
(2002) Circulation 106: 2238-43 - Direct imprinting of porous substrates: a rapid and low-cost approach for patterning porous nanomaterials.
Ryckman JD, Liscidini M, Sipe JE, Weiss SM
(2011) Nano Lett 11: 1857-62 - Bright white light emission from ultrasmall cadmium selenide nanocrystals.
Rosson TE, Claiborne SM, McBride JR, Stratton BS, Rosenthal SJ
(2012) J Am Chem Soc 134: 8006-9 - Expression and enzymatic activity of recombinant cytochrome P450 17 alpha-hydroxylase in Escherichia coli.
Barnes HJ, Arlotto MP, Waterman MR
(1991) Proc Natl Acad Sci U S A 88: 5597-601 - Identification of folate binding protein of mitochondria as dimethylglycine dehydrogenase.
Wittwer AJ, Wagner C
(1980) Proc Natl Acad Sci U S A 77: 4484-8 - New insights into tumor microstructure using temporal diffusion spectroscopy.
Colvin DC, Yankeelov TE, Does MD, Yue Z, Quarles C, Gore JC
(2008) Cancer Res 68: 5941-7 - Label-free molecular imaging of the kidney.
Prentice BM, Caprioli RM, Vuiblet V
(2017) Kidney Int 92: 580-598 - Remote effects of focal hippocampal seizures on the rat neocortex.
Englot DJ, Mishra AM, Mansuripur PK, Herman P, Hyder F, Blumenfeld H
(2008) J Neurosci 28: 9066-81 - Mapping mean axon diameter and axonal volume fraction by MRI using temporal diffusion spectroscopy.
Xu J, Li H, Harkins KD, Jiang X, Xie J, Kang H, Does MD, Gore JC
(2014) Neuroimage 103: 10-19 - Novel Raman Spectroscopic Biomarkers Indicate That Postyield Damage Denatures Bone's Collagen.
Unal M, Jung H, Akkus O
(2016) J Bone Miner Res 31: 1015-25 - Differential effects between the loss of MMP-2 and MMP-9 on structural and tissue-level properties of bone.
Nyman JS, Lynch CC, Perrien DS, Thiolloy S, O'Quinn EC, Patil CA, Bi X, Pharr GM, Mahadevan-Jansen A, Mundy GR
(2011) J Bone Miner Res 26: 1252-60 - Influence of basic residue content on fragment ion peak intensities in low-energy collision-induced dissociation spectra of peptides.
Tabb DL, Huang Y, Wysocki VH, Yates JR
(2004) Anal Chem 76: 1243-8 - CKD and Muscle Mitochondrial Energetics.
Roshanravan B, Kestenbaum B, Gamboa J, Jubrias SA, Ayers E, Curtin L, Himmelfarb J, de Boer IH, Conley KE
(2016) Am J Kidney Dis 68: 658-659 - Structural diversities of active site in clinical azole-bound forms between sterol 14alpha-demethylases (CYP51s) from human and Mycobacterium tuberculosis.
Matsuura K, Yoshioka S, Tosha T, Hori H, Ishimori K, Kitagawa T, Morishima I, Kagawa N, Waterman MR
(2005) J Biol Chem 280: 9088-96 - Multiple sequential steps involved in the binding of inhibitors to cytochrome P450 3A4.
Isin EM, Guengerich FP
(2007) J Biol Chem 282: 6863-74 - Formation of prostaglandin A analogues via an allene oxide.
Brash AR, Baertschi SW, Harris TM
(1990) J Biol Chem 265: 6705-12 - Quantitative observation of backbone disorder in native elastin.
Pometun MS, Chekmenev EY, Wittebort RJ
(2004) J Biol Chem 279: 7982-7 - On the relationship of coral allene oxide synthase to catalase. A single active site mutation that induces catalase activity in coral allene oxide synthase.
Tosha T, Uchida T, Brash AR, Kitagawa T
(2006) J Biol Chem 281: 12610-7 - Interaction between substrate and oxygen ligand responsible for effective O-O bond cleavage in bovine cytochrome P450 steroid 21-hydroxylase proved by Raman spectroscopy.
Tosha T, Kagawa N, Arase M, Waterman MR, Kitagawa T
(2008) J Biol Chem 283: 3708-17 - Flavodoxin and NADPH-flavodoxin reductase from Escherichia coli support bovine cytochrome P450c17 hydroxylase activities.
Jenkins CM, Waterman MR
(1994) J Biol Chem 269: 27401-8 - Structural requirements for substrate recognition of Mycobacterium tuberculosis 14 alpha-demethylase: implications for sterol biosynthesis.
Bellamine A, Mangla AT, Dennis AL, Nes WD, Waterman MR
(2001) J Lipid Res 42: 128-36 - Effect of normal variations on disease classification of Raman spectra from cervical tissue.
Vargis E, Kanter EM, Majumder SK, Keller MD, Beaven RB, Rao GG, Mahadevan-Jansen A
(2011) Analyst 136: 2981-7 - Dual excitation wavelength system for combined fingerprint and high wavenumber Raman spectroscopy.
Masson LE, O'Brien CM, Pence IJ, Herington JL, Reese J, van Leeuwen TG, Mahadevan-Jansen A
(2018) Analyst 143: 6049-6060 - Crystal structure of cone arrestin at 2.3A: evolution of receptor specificity.
Sutton RB, Vishnivetskiy SA, Robert J, Hanson SM, Raman D, Knox BE, Kono M, Navarro J, Gurevich VV
(2005) J Mol Biol 354: 1069-80 - In vivo Raman spectroscopy for biochemical monitoring of the human cervix throughout pregnancy.
O'Brien CM, Vargis E, Rudin A, Slaughter JC, Thomas G, Newton JM, Reese J, Bennett KA, Mahadevan-Jansen A
(2018) Am J Obstet Gynecol 218: 528.e1-528.e18 - Effect of hormonal variation on Raman spectra for cervical disease detection.
Kanter EM, Majumder S, Kanter GJ, Woeste EM, Mahadevan-Jansen A
(2009) Am J Obstet Gynecol 200: 512.e1-5 - Cortical bone mechanical properties are altered in an animal model of progressive chronic kidney disease.
Newman CL, Moe SM, Chen NX, Hammond MA, Wallace JM, Nyman JS, Allen MR
(2014) PLoS One 9: e99262 - Characterizing tumor response to chemotherapy at various length scales using temporal diffusion spectroscopy.
Xu J, Li K, Smith RA, Waterton JC, Zhao P, Chen H, Does MD, Manning HC, Gore JC
(2012) PLoS One 7: e41714 - Guided mode biosensor based on grating coupled porous silicon waveguide.
Wei X, Weiss SM
(2011) Opt Express 19: 11330-9 - Inverse Z-spectrum analysis for spillover-, MT-, and T1 -corrected steady-state pulsed CEST-MRI--application to pH-weighted MRI of acute stroke.
Zaiss M, Xu J, Goerke S, Khan IS, Singer RJ, Gore JC, Gochberg DF, Bachert P
(2014) NMR Biomed 27: 240-52 - Combined hyperspectral and spectral domain optical coherence tomography microscope for noninvasive hemodynamic imaging.
Skala MC, Fontanella A, Hendargo H, Dewhirst MW, Izatt JA
(2009) Opt Lett 34: 289-91 - Spatially offset Raman spectroscopy of layered soft tissues.
Keller MD, Majumder SK, Mahadevan-Jansen A
(2009) Opt Lett 34: 926-8 - 6450 nm wavelength tissue ablation using a nanosecond laser based on difference frequency mixing and stimulated Raman scattering.
Edwards GS, Pearlstein RD, Copeland ML, Hutson MS, Latone K, Spiro A, Pasmanik G
(2007) Opt Lett 32: 1426-8 - 1064 nm dispersive Raman spectroscopy of tissues with strong near-infrared autofluorescence.
Patil CA, Pence IJ, Lieber CA, Mahadevan-Jansen A
(2014) Opt Lett 39: 303-6 - Role of quinone-iron(III) interaction in NADPH-dependent enzymatic generation of hydroxyl radicals.
Dikalov SI, Rumyantseva GV, Piskunov AV, Weiner LM
(1992) Biochemistry 31: 8947-53 - Structure of the cytoplasmic domain of erythrocyte band 3 hereditary spherocytosis variant P327R: band 3 Tuscaloosa.
Zhou Z, DeSensi SC, Stein RA, Brandon S, Song L, Cobb CE, Hustedt EJ, Beth AH
(2007) Biochemistry 46: 10248-57 - Structural studies of tobacco mosaic virus and its components by laser Raman spectroscopy.
Fish SR, Hartman KA, Stubbs GJ, Thomas GJ
(1981) Biochemistry 20: 7449-57 - Biophysical characterization of the sterol demethylase P450 from Mycobacterium tuberculosis, its cognate ferredoxin, and their interactions.
McLean KJ, Warman AJ, Seward HE, Marshall KR, Girvan HM, Cheesman MR, Waterman MR, Munro AW
(2006) Biochemistry 45: 8427-43 - Raman evidence for specific substrate-induced structural changes in the heme pocket of human cytochrome P450 aromatase during the three consecutive oxygen activation steps.
Tosha T, Kagawa N, Ohta T, Yoshioka S, Waterman MR, Kitagawa T
(2006) Biochemistry 45: 5631-40
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