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Creative Data Solutions (CDS) is a Vanderbilt Shared Resource and has extensive experience in providing effective and robust solutions to challenges pertaining to research data using modern informatics and bioinformatics approaches.
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Connections to DNA, Viral are shown below. Double-click or tap a node for more information.
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- Tenofovir disoproxil fumarate versus adefovir dipivoxil for chronic hepatitis B.
Marcellin P, Heathcote EJ, Buti M, Gane E, de Man RA, Krastev Z, Germanidis G, Lee SS, Flisiak R, Kaita K, Manns M, Kotzev I, Tchernev K, Buggisch P, Weilert F, Kurdas OO, Shiffman ML, Trinh H, Washington MK, Sorbel J, Anderson J, Snow-Lampart A, Mondou E, Quinn J, Rousseau F
(2008) N Engl J Med 359: 2442-55 - Clustered illegitimate recombination events in mammalian cells involving very short sequence homologies.
Ruley HE, Fried M
(1983) Nature 304: 181-4 - Icosahedral bacteriophage ΦX174 forms a tail for DNA transport during infection.
Sun L, Young LN, Zhang X, Boudko SP, Fokine A, Zbornik E, Roznowski AP, Molineux IJ, Rossmann MG, Fane BA
(2014) Nature 505: 432-5 - Selective and accurate initiation of transcription at the Ad2 major late promotor in a soluble system dependent on purified RNA polymerase II and DNA.
Weil PA, Luse DS, Segall J, Roeder RG
(1979) Cell 18: 469-84 - Alternate replication in B cells and epithelial cells switches tropism of Epstein-Barr virus.
Borza CM, Hutt-Fletcher LM
(2002) Nat Med 8: 594-9 - Adenovirus-mediated p53 gene transfer in advanced non-small-cell lung cancer.
Swisher SG, Roth JA, Nemunaitis J, Lawrence DD, Kemp BL, Carrasco CH, Connors DG, El-Naggar AK, Fossella F, Glisson BS, Hong WK, Khuri FR, Kurie JM, Lee JJ, Lee JS, Mack M, Merritt JA, Nguyen DM, Nesbitt JC, Perez-Soler R, Pisters KM, Putnam JB, Richli WR, Savin M, Schrump DS, Shin DM, Shulkin A, Walsh GL, Wait J, Weill D, Waugh MK
(1999) J Natl Cancer Inst 91: 763-71 - Extensive phenotyping of individuals at risk for familial interstitial pneumonia reveals clues to the pathogenesis of interstitial lung disease.
Kropski JA, Pritchett JM, Zoz DF, Crossno PF, Markin C, Garnett ET, Degryse AL, Mitchell DB, Polosukhin VV, Rickman OB, Choi L, Cheng DS, McConaha ME, Jones BR, Gleaves LA, McMahon FB, Worrell JA, Solus JF, Ware LB, Lee JW, Massion PP, Zaynagetdinov R, White ES, Kurtis JD, Johnson JE, Groshong SD, Lancaster LH, Young LR, Steele MP, Phillips Iii JA, Cogan JD, Loyd JE, Lawson WE, Blackwell TS
(2015) Am J Respir Crit Care Med 191: 417-26 - Evaluation of candidate vaccine approaches for MERS-CoV.
Wang L, Shi W, Joyce MG, Modjarrad K, Zhang Y, Leung K, Lees CR, Zhou T, Yassine HM, Kanekiyo M, Yang ZY, Chen X, Becker MM, Freeman M, Vogel L, Johnson JC, Olinger G, Todd JP, Bagci U, Solomon J, Mollura DJ, Hensley L, Jahrling P, Denison MR, Rao SS, Subbarao K, Kwong PD, Mascola JR, Kong WP, Graham BS
(2015) Nat Commun 6: 7712 - Development of a high-titer retrovirus producer cell line capable of gene transfer into rhesus monkey hematopoietic stem cells.
Bodine DM, McDonagh KT, Brandt SJ, Ney PA, Agricola B, Byrne E, Nienhuis AW
(1990) Proc Natl Acad Sci U S A 87: 3738-42 - Dual selection mechanisms drive efficient single-gene reverse genetics for rotavirus.
Trask SD, Taraporewala ZF, Boehme KW, Dermody TS, Patton JT
(2010) Proc Natl Acad Sci U S A 107: 18652-7 - Human papillomavirus 16 E6 expression disrupts the p53-mediated cellular response to DNA damage.
Kessis TD, Slebos RJ, Nelson WG, Kastan MB, Plunkett BS, Han SM, Lorincz AT, Hedrick L, Cho KR
(1993) Proc Natl Acad Sci U S A 90: 3988-92 - Origin of replication of the DNA of a herpesvirus (pseudorabies).
Ben-Porat T, Veach RA
(1980) Proc Natl Acad Sci U S A 77: 172-5 - Novel poxvirus infection in 2 patients from the United States.
Osadebe LU, Manthiram K, McCollum AM, Li Y, Emerson GL, Gallardo-Romero NF, Doty JB, Wilkins K, Zhao H, Drew CP, Metcalfe MG, Goldsmith CS, Muehlenbachs A, Googe PB, Dunn J, Duenckel T, Henderson H, Carroll DS, Zaki SR, Denison MR, Reynolds MG, Damon IK
(2015) Clin Infect Dis 60: 195-202 - Etiological involvement of oncogenic human papillomavirus in tonsillar squamous cell carcinomas lacking retinoblastoma cell cycle control.
Andl T, Kahn T, Pfuhl A, Nicola T, Erber R, Conradt C, Klein W, Helbig M, Dietz A, Weidauer H, Bosch FX
(1998) Cancer Res 58: 5-13 - Impact of Serum Antibodies to HPV Serotypes 6, 11, 16, and 18 to Risks of Subsequent Genital HPV Infections in Men: The HIM Study.
Pamnani SJ, Sudenga SL, Viscidi R, Rollison DE, Torres BN, Ingles DJ, Abrahamsen M, Villa LL, Lazcano-Ponce E, Salmeron J, Quiterio M, Huang Y, Borenstein A, Giuliano AR
(2016) Cancer Res 76: 6066-6075 - Real-time imaging of the reorientation mechanisms of YOYO-labelled DNA molecules during 90 degrees and 120 degrees pulsed field gel electrophoresis.
Gurrieri S, Smith SB, Wells KS, Johnson ID, Bustamante C
(1996) Nucleic Acids Res 24: 4759-67 - Bacteriophage T4 DNA packaging genes 16 and 17.
Powell D, Franklin J, Arisaka F, Mosig G
(1990) Nucleic Acids Res 18: 4005 - The complexity of virus systems: the case of endosymbionts.
Metcalf JA, Bordenstein SR
(2012) Curr Opin Microbiol 15: 546-52 - Genital papillomavirus infection and cervical dysplasia--opportunistic complications of HIV infection.
Laga M, Icenogle JP, Marsella R, Manoka AT, Nzila N, Ryder RW, Vermund SH, Heyward WL, Nelson A, Reeves WC
(1992) Int J Cancer 50: 45-8 - Expression of Epstein-Barr virus-encoded growth-transformation-associated proteins in lymphoproliferations of bone-marrow transplant recipients.
Gratama JW, Zutter MM, Minarovits J, Oosterveer MA, Thomas ED, Klein G, Ernberg I
(1991) Int J Cancer 47: 188-92 - Natural immune responses against eight oncogenic human papillomaviruses in the ASCUS-LSIL Triage Study.
Wilson LE, Pawlita M, Castle PE, Waterboer T, Sahasrabuddhe V, Gravitt PE, Schiffman M, Wentzensen N
(2013) Int J Cancer 133: 2172-81 - Comparison of visual inspection with acetic acid and cervical cytology to detect high-grade cervical neoplasia among HIV-infected women in India.
Sahasrabuddhe VV, Bhosale RA, Kavatkar AN, Nagwanshi CA, Joshi SN, Jenkins CA, Shepherd BE, Kelkar RS, Sahay S, Risbud AR, Vermund SH, Mehendale SM
(2012) Int J Cancer 130: 234-40 - Proteomic analysis of oropharyngeal carcinomas reveals novel HPV-associated biological pathways.
Slebos RJ, Jehmlich N, Brown B, Yin Z, Chung CH, Yarbrough WG, Liebler DC
(2013) Int J Cancer 132: 568-79 - Reduced prevalence of vulvar HPV16/18 infection among women who received the HPV16/18 bivalent vaccine: a nested analysis within the Costa Rica Vaccine Trial.
Lang Kuhs KA, Gonzalez P, Rodriguez AC, van Doorn LJ, Schiffman M, Struijk L, Chen S, Quint W, Lowy DR, Porras C, DelVecchio C, Jimenez S, Safaeian M, Schiller JT, Wacholder S, Herrero R, Hildesheim A, Kreimer AR, Costa Rica Vaccine Trial Group
(2014) J Infect Dis 210: 1890-9 - Risk factors for squamous intraepithelial lesions on Pap smear in women at risk for human immunodeficiency virus infection.
Klein RS, Ho GY, Vermund SH, Fleming I, Burk RD
(1994) J Infect Dis 170: 1404-9 - Induction of mutations by replication of malondialdehyde-modified M13 DNA in Escherichia coli: determination of the extent of DNA modification, genetic requirements for mutagenesis, and types of mutations induced.
Benamira M, Johnson K, Chaudhary A, Bruner K, Tibbetts C, Marnett LJ
(1995) Carcinogenesis 16: 93-9 - Multiple forms of C/EBP beta bind the EFII enhancer sequence in the Rous sarcoma virus long terminal repeat.
Sears RC, Sealy L
(1994) Mol Cell Biol 14: 4855-71 - Sequence repeats in a polyoma virus DNA region important for gene expression.
Ruley HE, Fried M
(1983) J Virol 47: 233-7 - Recombination occurs mainly between parental genomes and precedes DNA replication in pseudorabies virus-infected cells.
Ben-Porat T, Brown L, Veach RA
(1982) J Virol 44: 134-43 - Identification and characterization of severe acute respiratory syndrome coronavirus replicase proteins.
Prentice E, McAuliffe J, Lu X, Subbarao K, Denison MR
(2004) J Virol 78: 9977-86 - Evidence for a functional link between uncoating of the human immunodeficiency virus type 1 core and nuclear import of the viral preintegration complex.
Dismuke DJ, Aiken C
(2006) J Virol 80: 3712-20 - Structural and transcriptional analysis of human papillomavirus type 16 sequences in cervical carcinoma cell lines.
Baker CC, Phelps WC, Lindgren V, Braun MJ, Gonda MA, Howley PM
(1987) J Virol 61: 962-71 - Structural and biological analysis of integrated polyoma virus DNA and its adjacent host sequences cloned from transformed rat cells.
Hayday A, Ruley HE, Fried M
(1982) J Virol 44: 67-77 - Analysis of E1A-mediated growth regulation functions: binding of the 300-kilodalton cellular product correlates with E1A enhancer repression function and DNA synthesis-inducing activity.
Stein RW, Corrigan M, Yaciuk P, Whelan J, Moran E
(1990) J Virol 64: 4421-7 - Tissue-specific transcriptional targeting of a replication-competent retroviral vector.
Logg CR, Logg A, Matusik RJ, Bochner BH, Kasahara N
(2002) J Virol 76: 12783-91 - Single-amino-acid substitutions in open reading frame (ORF) 1b-nsp14 and ORF 2a proteins of the coronavirus mouse hepatitis virus are attenuating in mice.
Sperry SM, Kazi L, Graham RL, Baric RS, Weiss SR, Denison MR
(2005) J Virol 79: 3391-400 - Role of microglial cells in selective replication of simian immunodeficiency virus genotypes in the brain.
Babas T, Muñoz D, Mankowski JL, Tarwater PM, Clements JE, Zink MC
(2003) J Virol 77: 208-16 - Acquisition of an additional internal cleavage site differentially affects the ability of pseudorabies virus to multiply in different host cells.
Rall GF, Lu ZQ, Sugg N, Veach RA, Ben-Porat T
(1991) J Virol 65: 6604-11 - Functions of the sequences at the ends of the inverted repeats of pseudorabies virus.
Rall GF, Kupershmidt S, Sugg N, Veach RA, Ben-Porat T
(1992) J Virol 66: 1506-19 - Systematic assembly of a full-length infectious cDNA of mouse hepatitis virus strain A59.
Yount B, Denison MR, Weiss SR, Baric RS
(2002) J Virol 76: 11065-78
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