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Creative Data Solutions (CDS) is a Vanderbilt Shared Resource and has extensive experience in providing effective and robust solutions to challenges pertaining to research data using modern informatics and bioinformatics approaches.
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Connections to Sequence Deletion are shown below. Double-click or tap a node for more information.
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- The molecular basis of hypodactyly (Hd): a deletion in Hoxa 13 leads to arrest of digital arch formation.
Mortlock DP, Post LC, Innis JW
(1996) Nat Genet 13: 284-9 - Systematic generation of high-resolution deletion coverage of the Drosophila melanogaster genome.
Parks AL, Cook KR, Belvin M, Dompe NA, Fawcett R, Huppert K, Tan LR, Winter CG, Bogart KP, Deal JE, Deal-Herr ME, Grant D, Marcinko M, Miyazaki WY, Robertson S, Shaw KJ, Tabios M, Vysotskaia V, Zhao L, Andrade RS, Edgar KA, Howie E, Killpack K, Milash B, Norton A, Thao D, Whittaker K, Winner MA, Friedman L, Margolis J, Singer MA, Kopczynski C, Curtis D, Kaufman TC, Plowman GD, Duyk G, Francis-Lang HL
(2004) Nat Genet 36: 288-92 - High-efficiency deleter mice show that FLPe is an alternative to Cre-loxP.
Rodríguez CI, Buchholz F, Galloway J, Sequerra R, Kasper J, Ayala R, Stewart AF, Dymecki SM
(2000) Nat Genet 25: 139-40 - Deletions of a differentially methylated CpG island at the SNRPN gene define a putative imprinting control region.
Sutcliffe JS, Nakao M, Christian S, Orstavik KH, Tommerup N, Ledbetter DH, Beaudet AL
(1994) Nat Genet 8: 52-8 - De novo truncating mutations in E6-AP ubiquitin-protein ligase gene (UBE3A) in Angelman syndrome.
Matsuura T, Sutcliffe JS, Fang P, Galjaard RJ, Jiang YH, Benton CS, Rommens JM, Beaudet AL
(1997) Nat Genet 15: 74-7 - Induction of HIV Neutralizing Antibody Lineages in Mice with Diverse Precursor Repertoires.
Tian M, Cheng C, Chen X, Duan H, Cheng HL, Dao M, Sheng Z, Kimble M, Wang L, Lin S, Schmidt SD, Du Z, Joyce MG, Chen Y, DeKosky BJ, Chen Y, Normandin E, Cantor E, Chen RE, Doria-Rose NA, Zhang Y, Shi W, Kong WP, Choe M, Henry AR, Laboune F, Georgiev IS, Huang PY, Jain S, McGuire AT, Georgeson E, Menis S, Douek DC, Schief WR, Stamatatos L, Kwong PD, Shapiro L, Haynes BF, Mascola JR, Alt FW
(2016) Cell 166: 1471-1484.e18 - Structure of Bcl-xL-Bak peptide complex: recognition between regulators of apoptosis.
Sattler M, Liang H, Nettesheim D, Meadows RP, Harlan JE, Eberstadt M, Yoon HS, Shuker SB, Chang BS, Minn AJ, Thompson CB, Fesik SW
(1997) Science 275: 983-6 - Functional variant of CYP4A11 20-hydroxyeicosatetraenoic acid synthase is associated with essential hypertension.
Gainer JV, Bellamine A, Dawson EP, Womble KE, Grant SW, Wang Y, Cupples LA, Guo CY, Demissie S, O'Donnell CJ, Brown NJ, Waterman MR, Capdevila JH
(2005) Circulation 111: 63-9 - Specificity and timing of neocortical transcriptome changes in response to BDNF gene ablation during embryogenesis or adulthood.
Glorioso C, Sabatini M, Unger T, Hashimoto T, Monteggia LM, Lewis DA, Mirnics K
(2006) Mol Psychiatry 11: 633-48 - High-throughput gene targeting and phenotyping in zebrafish using CRISPR/Cas9.
Varshney GK, Pei W, LaFave MC, Idol J, Xu L, Gallardo V, Carrington B, Bishop K, Jones M, Li M, Harper U, Huang SC, Prakash A, Chen W, Sood R, Ledin J, Burgess SM
(2015) Genome Res 25: 1030-42 - Helicobacter pylori strain-specific differences in genetic content, identified by microarray, influence host inflammatory responses.
Israel DA, Salama N, Arnold CN, Moss SF, Ando T, Wirth HP, Tham KT, Camorlinga M, Blaser MJ, Falkow S, Peek RM
(2001) J Clin Invest 107: 611-20 - Epithelial stem cell mutations that promote squamous cell carcinoma metastasis.
White RA, Neiman JM, Reddi A, Han G, Birlea S, Mitra D, Dionne L, Fernandez P, Murao K, Bian L, Keysar SB, Goldstein NB, Song N, Bornstein S, Han Z, Lu X, Wisell J, Li F, Song J, Lu SL, Jimeno A, Roop DR, Wang XJ
(2013) J Clin Invest 123: 4390-404 - Angiotensin-independent mechanism for aldosterone synthesis during chronic extracellular fluid volume depletion.
Okubo S, Niimura F, Nishimura H, Takemoto F, Fogo A, Matsusaka T, Ichikawa I
(1997) J Clin Invest 99: 855-60 - Transactivation-defective c-MycS retains the ability to regulate proliferation and apoptosis.
Xiao Q, Claassen G, Shi J, Adachi S, Sedivy J, Hann SR
(1998) Genes Dev 12: 3803-8 - Tissue-specific and allele-specific replication timing control in the imprinted human Prader-Willi syndrome region.
Gunaratne PH, Nakao M, Ledbetter DH, Sutcliffe JS, Chinault AC
(1995) Genes Dev 9: 808-20 - SIN-dependent phosphoinhibition of formin multimerization controls fission yeast cytokinesis.
Bohnert KA, Grzegorzewska AP, Willet AH, Vander Kooi CW, Kovar DR, Gould KL
(2013) Genes Dev 27: 2164-77 - TM4SF20 ancestral deletion and susceptibility to a pediatric disorder of early language delay and cerebral white matter hyperintensities.
Wiszniewski W, Hunter JV, Hanchard NA, Willer JR, Shaw C, Tian Q, Illner A, Wang X, Cheung SW, Patel A, Campbell IM, Gelowani V, Hixson P, Ester AR, Azamian MS, Potocki L, Zapata G, Hernandez PP, Ramocki MB, Santos-Cortez RL, Wang G, York MK, Justice MJ, Chu ZD, Bader PI, Omo-Griffith L, Madduri NS, Scharer G, Crawford HP, Yanatatsaneejit P, Eifert A, Kerr J, Bacino CA, Franklin AI, Goin-Kochel RP, Simpson G, Immken L, Haque ME, Stosic M, Williams MD, Morgan TM, Pruthi S, Omary R, Boyadjiev SA, Win KK, Thida A, Hurles M, Hibberd ML, Khor CC, Van Vinh Chau N, Gallagher TE, Mutirangura A, Stankiewicz P, Beaudet AL, Maletic-Savatic M, Rosenfeld JA, Shaffer LG, Davis EE, Belmont JW, Dunstan S, Simmons CP, Bonnen PE, Leal SM, Katsanis N, Lupski JR, Lalani SR
(2013) Am J Hum Genet 93: 197-210 - Contribution of SHANK3 mutations to autism spectrum disorder.
Moessner R, Marshall CR, Sutcliffe JS, Skaug J, Pinto D, Vincent J, Zwaigenbaum L, Fernandez B, Roberts W, Szatmari P, Scherer SW
(2007) Am J Hum Genet 81: 1289-97 - Novel HOXA13 mutations and the phenotypic spectrum of hand-foot-genital syndrome.
Goodman FR, Bacchelli C, Brady AF, Brueton LA, Fryns JP, Mortlock DP, Innis JW, Holmes LB, Donnenfeld AE, Feingold M, Beemer FA, Hennekam RC, Scambler PJ
(2000) Am J Hum Genet 67: 197-202 - Regulation of melanosome movement in the cell cycle by reversible association with myosin V.
Rogers SL, Karcher RL, Roland JT, Minin AA, Steffen W, Gelfand VI
(1999) J Cell Biol 146: 1265-76 - Base-displaced intercalated structure of the food mutagen 2-amino-3-methylimidazo[4,5-f]quinoline in the recognition sequence of the NarI restriction enzyme, a hotspot for -2 bp deletions.
Wang F, DeMuro NE, Elmquist CE, Stover JS, Rizzo CJ, Stone MP
(2006) J Am Chem Soc 128: 10085-95 - Identification of a novel regulatory domain in Bcl-X(L) and Bcl-2.
Chang BS, Minn AJ, Muchmore SW, Fesik SW, Thompson CB
(1997) EMBO J 16: 968-77 - Analysis of KaiA-KaiC protein interactions in the cyano-bacterial circadian clock using hybrid structural methods.
Pattanayek R, Williams DR, Pattanayek S, Xu Y, Mori T, Johnson CH, Stewart PL, Egli M
(2006) EMBO J 25: 2017-28 - Two direct repeats cause most human mtDNA deletions.
Samuels DC, Schon EA, Chinnery PF
(2004) Trends Genet 20: 393-8 - Ablation of triadin causes loss of cardiac Ca2+ release units, impaired excitation-contraction coupling, and cardiac arrhythmias.
Chopra N, Yang T, Asghari P, Moore ED, Huke S, Akin B, Cattolica RA, Perez CF, Hlaing T, Knollmann-Ritschel BE, Jones LR, Pessah IN, Allen PD, Franzini-Armstrong C, Knollmann BC
(2009) Proc Natl Acad Sci U S A 106: 7636-41 - Conformation of receptor-bound visual arrestin.
Kim M, Vishnivetskiy SA, Van Eps N, Alexander NS, Cleghorn WM, Zhan X, Hanson SM, Morizumi T, Ernst OP, Meiler J, Gurevich VV, Hubbell WL
(2012) Proc Natl Acad Sci U S A 109: 18407-12 - Defective CD95/APO-1/Fas signal complex formation in the human autoimmune lymphoproliferative syndrome, type Ia.
Martin DA, Zheng L, Siegel RM, Huang B, Fisher GH, Wang J, Jackson CE, Puck JM, Dale J, Straus SE, Peter ME, Krammer PH, Fesik S, Lenardo MJ
(1999) Proc Natl Acad Sci U S A 96: 4552-7 - Structural, functional, and behavioral insights of dopamine dysfunction revealed by a deletion in .
Campbell NG, Shekar A, Aguilar JI, Peng D, Navratna V, Yang D, Morley AN, Duran AM, Galli G, O'Grady B, Ramachandran R, Sutcliffe JS, Sitte HH, Erreger K, Meiler J, Stockner T, Bellan LM, Matthies HJG, Gouaux E, Mchaourab HS, Galli A
(2019) Proc Natl Acad Sci U S A 116: 3853-3862 - Bves directly interacts with GEFT, and controls cell shape and movement through regulation of Rac1/Cdc42 activity.
Smith TK, Hager HA, Francis R, Kilkenny DM, Lo CW, Bader DM
(2008) Proc Natl Acad Sci U S A 105: 8298-303 - Calcium-dependent regulation of the voltage-gated sodium channel hH1: intrinsic and extrinsic sensors use a common molecular switch.
Shah VN, Wingo TL, Weiss KL, Williams CK, Balser JR, Chazin WJ
(2006) Proc Natl Acad Sci U S A 103: 3592-7 - The miRNA-processing enzyme dicer is essential for the morphogenesis and maintenance of hair follicles.
Andl T, Murchison EP, Liu F, Zhang Y, Yunta-Gonzalez M, Tobias JW, Andl CD, Seykora JT, Hannon GJ, Millar SE
(2006) Curr Biol 16: 1041-9 - DNA copy number losses in chromosome 14: an early change in gastrointestinal stromal tumors.
el-Rifai W, Sarlomo-Rikala M, Miettinen M, Knuutila S, Andersson LC
(1996) Cancer Res 56: 3230-3 - Aberrant epidermal growth factor receptor signaling and enhanced sensitivity to EGFR inhibitors in lung cancer.
Amann J, Kalyankrishna S, Massion PP, Ohm JE, Girard L, Shigematsu H, Peyton M, Juroske D, Huang Y, Stuart Salmon J, Kim YH, Pollack JR, Yanagisawa K, Gazdar A, Minna JD, Kurie JM, Carbone DP
(2005) Cancer Res 65: 226-35 - Next-generation sequencing reveals the biological significance of the N(2),3-ethenoguanine lesion in vivo.
Chang SC, Fedeles BI, Wu J, Delaney JC, Li D, Zhao L, Christov PP, Yau E, Singh V, Jost M, Drennan CL, Marnett LJ, Rizzo CJ, Levine SS, Guengerich FP, Essigmann JM
(2015) Nucleic Acids Res 43: 5489-500 - Mitochondrial DNA deletions are associated with non-B DNA conformations.
Damas J, Carneiro J, Gonçalves J, Stewart JB, Samuels DC, Amorim A, Pereira F
(2012) Nucleic Acids Res 40: 7606-21 - Partial gene deletion of endothelial nitric oxide synthase predisposes to exaggerated high-fat diet-induced insulin resistance and arterial hypertension.
Cook S, Hugli O, Egli M, Ménard B, Thalmann S, Sartori C, Perrin C, Nicod P, Thorens B, Vollenweider P, Scherrer U, Burcelin R
(2004) Diabetes 53: 2067-72 - Partial gene deletion of heart-type fatty acid-binding protein limits the severity of dietary-induced insulin resistance.
Shearer J, Fueger PT, Bracy DP, Wasserman DH, Rottman JN
(2005) Diabetes 54: 3133-9 - Use of deep whole-genome sequencing data to identify structure risk variants in breast cancer susceptibility genes.
Guo X, Shi J, Cai Q, Shu XO, He J, Wen W, Allen J, Pharoah P, Dunning A, Hunter DJ, Kraft P, Easton DF, Zheng W, Long J
(2018) Hum Mol Genet 27: 853-859 - Characterization of the mouse Ron/Stk receptor tyrosine kinase gene.
Waltz SE, Toms CL, McDowell SA, Clay LA, Muraoka RS, Air EL, Sun WY, Thomas MB, Degen SJ
(1998) Oncogene 16: 27-42 - Two serum response elements mediate transcriptional repression of human smooth muscle alpha-actin promoter in ras-transformed cells.
Bushel P, Kim JH, Chang W, Catino JJ, Ruley HE, Kumar CC
(1995) Oncogene 10: 1361-70
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