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Creative Data Solutions (CDS) is a Vanderbilt Shared Resource and has extensive experience in providing effective and robust solutions to challenges pertaining to research data using modern informatics and bioinformatics approaches.
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Publications
- Solution structure of a pleckstrin-homology domain.
Yoon HS, Hajduk PJ, Petros AM, Olejniczak ET, Meadows RP, Fesik SW
(1994) Nature 369: 672-5 - Icosahedral bacteriophage ΦX174 forms a tail for DNA transport during infection.
Sun L, Young LN, Zhang X, Boudko SP, Fokine A, Zbornik E, Roznowski AP, Molineux IJ, Rossmann MG, Fane BA
(2014) Nature 505: 432-5 - Bcl-x(L) forms an ion channel in synthetic lipid membranes.
Minn AJ, Vélez P, Schendel SL, Liang H, Muchmore SW, Fesik SW, Fill M, Thompson CB
(1997) Nature 385: 353-7 - NMR structure and mutagenesis of the Fas (APO-1/CD95) death domain.
Huang B, Eberstadt M, Olejniczak ET, Meadows RP, Fesik SW
(1996) Nature 384: 638-41 - X-ray and NMR structure of human Bcl-xL, an inhibitor of programmed cell death.
Muchmore SW, Sattler M, Liang H, Meadows RP, Harlan JE, Yoon HS, Nettesheim D, Chang BS, Thompson CB, Wong SL, Ng SL, Fesik SW
(1996) Nature 381: 335-41 - An integrated semiconductor device enabling non-optical genome sequencing.
Rothberg JM, Hinz W, Rearick TM, Schultz J, Mileski W, Davey M, Leamon JH, Johnson K, Milgrew MJ, Edwards M, Hoon J, Simons JF, Marran D, Myers JW, Davidson JF, Branting A, Nobile JR, Puc BP, Light D, Clark TA, Huber M, Branciforte JT, Stoner IB, Cawley SE, Lyons M, Fu Y, Homer N, Sedova M, Miao X, Reed B, Sabina J, Feierstein E, Schorn M, Alanjary M, Dimalanta E, Dressman D, Kasinskas R, Sokolsky T, Fidanza JA, Namsaraev E, McKernan KJ, Williams A, Roth GT, Bustillo J
(2011) Nature 475: 348-52 - Hypothalamic CART is a new anorectic peptide regulated by leptin.
Kristensen P, Judge ME, Thim L, Ribel U, Christjansen KN, Wulff BS, Clausen JT, Jensen PB, Madsen OD, Vrang N, Larsen PJ, Hastrup S
(1998) Nature 393: 72-6 - NMR structure and mutagenesis of the inhibitor-of-apoptosis protein XIAP.
Sun C, Cai M, Gunasekera AH, Meadows RP, Wang H, Chen J, Zhang H, Wu W, Xu N, Ng SC, Fesik SW
(1999) Nature 401: 818-22 - The 2.0 A crystal structure of a heterotrimeric G protein.
Lambright DG, Sondek J, Bohm A, Skiba NP, Hamm HE, Sigler PB
(1996) Nature 379: 311-9 - Structural basis for binding of Smac/DIABLO to the XIAP BIR3 domain.
Liu Z, Sun C, Olejniczak ET, Meadows RP, Betz SF, Oost T, Herrmann J, Wu JC, Fesik SW
(2000) Nature 408: 1004-8 - Drug metabolism by Escherichia coli expressing human cytochromes P450.
Parikh A, Gillam EM, Guengerich FP
(1997) Nat Biotechnol 15: 784-8 - HMCES Maintains Genome Integrity by Shielding Abasic Sites in Single-Strand DNA.
Mohni KN, Wessel SR, Zhao R, Wojciechowski AC, Luzwick JW, Layden H, Eichman BF, Thompson PS, Mehta KPM, Cortez D
(2019) Cell 176: 144-153.e13 - Mus81-Eme1 are essential components of a Holliday junction resolvase.
Boddy MN, Gaillard PHL, McDonald WH, Shanahan P, Yates JR, Russell P
(2001) Cell 107: 537-48 - Regulation of intestinal alpha-defensin activation by the metalloproteinase matrilysin in innate host defense.
Wilson CL, Ouellette AJ, Satchell DP, Ayabe T, López-Boado YS, Stratman JL, Hultgren SJ, Matrisian LM, Parks WC
(1999) Science 286: 113-7 - Solution nuclear magnetic resonance structure of membrane-integral diacylglycerol kinase.
Van Horn WD, Kim HJ, Ellis CD, Hadziselimovic A, Sulistijo ES, Karra MD, Tian C, Sönnichsen FD, Sanders CR
(2009) Science 324: 1726-9 - Patients with familial adenomatous polyposis harbor colonic biofilms containing tumorigenic bacteria.
Dejea CM, Fathi P, Craig JM, Boleij A, Taddese R, Geis AL, Wu X, DeStefano Shields CE, Hechenbleikner EM, Huso DL, Anders RA, Giardiello FM, Wick EC, Wang H, Wu S, Pardoll DM, Housseau F, Sears CL
(2018) Science 359: 592-597 - Isotope-edited NMR of cyclosporin A bound to cyclophilin: evidence for a trans 9,10 amide bond.
Fesik SW, Gampe RT, Holzman TF, Egan DA, Edalji R, Luly JR, Simmer R, Helfrich R, Kishore V, Rich DH
(1990) Science 250: 1406-9 - SLAM is a microbial sensor that regulates bacterial phagosome functions in macrophages.
Berger SB, Romero X, Ma C, Wang G, Faubion WA, Liao G, Compeer E, Keszei M, Rameh L, Wang N, Boes M, Regueiro JR, Reinecker HC, Terhorst C
(2010) Nat Immunol 11: 920-7 - Phosphorylation of the enteropathogenic E. coli receptor by the Src-family kinase c-Fyn triggers actin pedestal formation.
Phillips N, Hayward RD, Koronakis V
(2004) Nat Cell Biol 6: 618-25 - Nitrate in the active site of protein tyrosine phosphatase 1B is a putative mimetic of the transition state.
Kenny PW, Newman J, Peat TS
(2014) Acta Crystallogr D Biol Crystallogr 70: 565-71 - Editing of the gut microbiota reduces carcinogenesis in mouse models of colitis-associated colorectal cancer.
Zhu W, Miyata N, Winter MG, Arenales A, Hughes ER, Spiga L, Kim J, Sifuentes-Dominguez L, Starokadomskyy P, Gopal P, Byndloss MX, Santos RL, Burstein E, Winter SE
(2019) J Exp Med 216: 2378-2393 - Antitoxins: therapy for stressed bacteria.
Hadjifrangiskou M, Kostakioti M, Hultgren SJ
(2011) Nat Chem Biol 7: 345-7 - New mechanism for a classic folate inhibitor.
Brown HA
(2008) Nat Chem Biol 4: 581-2 - Helicobacter pylori and gastric acid: biological and therapeutic implications.
McGowan CC, Cover TL, Blaser MJ
(1996) Gastroenterology 110: 926-38 - Incorporation of therapeutically modified bacteria into gut microbiota inhibits obesity.
Chen Z, Guo L, Zhang Y, Walzem RL, Pendergast JS, Printz RL, Morris LC, Matafonova E, Stien X, Kang L, Coulon D, McGuinness OP, Niswender KD, Davies SS
(2014) J Clin Invest 124: 3391-406 - Impact of bacteria on the phenotype, functions, and therapeutic activities of invariant NKT cells in mice.
Kim S, Lalani S, Parekh VV, Vincent TL, Wu L, Van Kaer L
(2008) J Clin Invest 118: 2301-15 - Modulation of human platelet protein kinase C by endotoxic lipid A.
Grabarek J, Timmons S, Hawiger J
(1988) J Clin Invest 82: 964-71 - Salmonella Mitigates Oxidative Stress and Thrives in the Inflamed Gut by Evading Calprotectin-Mediated Manganese Sequestration.
Diaz-Ochoa VE, Lam D, Lee CS, Klaus S, Behnsen J, Liu JZ, Chim N, Nuccio SP, Rathi SG, Mastroianni JR, Edwards RA, Jacobo CM, Cerasi M, Battistoni A, Ouellette AJ, Goulding CW, Chazin WJ, Skaar EP, Raffatellu M
(2016) Cell Host Microbe 19: 814-25 - Genetic Ablation of Butyrate Utilization Attenuates Gastrointestinal Salmonella Disease.
Bronner DN, Faber F, Olsan EE, Byndloss MX, Sayed NA, Xu G, Yoo W, Kim D, Ryu S, Lebrilla CB, Bäumler AJ
(2018) Cell Host Microbe 23: 266-273.e4 - Commensal Enterobacteriaceae Protect against Salmonella Colonization through Oxygen Competition.
Litvak Y, Mon KKZ, Nguyen H, Chanthavixay G, Liou M, Velazquez EM, Kutter L, Alcantara MA, Byndloss MX, Tiffany CR, Walker GT, Faber F, Zhu Y, Bronner DN, Byndloss AJ, Tsolis RM, Zhou H, Bäumler AJ
(2019) Cell Host Microbe 25: 128-139.e5 - Circadian orchestration of gene expression in cyanobacteria.
Liu Y, Tsinoremas NF, Johnson CH, Lebedeva NV, Golden SS, Ishiura M, Kondo T
(1995) Genes Dev 9: 1469-78 - Defining the lung's response to endotoxin.
Blackwell TS, Christman JW
(2001) Am J Respir Crit Care Med 163: 1516-7 - Inhaled nitric oxide reduces lung fluid filtration after endotoxin in awake sheep.
Bjertnaes LJ, Koizumi T, Newman JH
(1998) Am J Respir Crit Care Med 158: 1416-23 - Schizosaccharomyces pombe cdc4+ gene encodes a novel EF-hand protein essential for cytokinesis.
McCollum D, Balasubramanian MK, Pelcher LE, Hemmingsen SM, Gould KL
(1995) J Cell Biol 130: 651-60 - Discovery of aminoglycoside mimetics by NMR-based screening of Escherichia coli A-site RNA.
Yu L, Oost TK, Schkeryantz JM, Yang J, Janowick D, Fesik SW
(2003) J Am Chem Soc 125: 4444-50
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