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Creative Data Solutions (CDS) is a Vanderbilt Shared Resource and has extensive experience in providing effective and robust solutions to challenges pertaining to research data using modern informatics and bioinformatics approaches.
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Connections to Amino Acid Motifs are shown below. Double-click or tap a node for more information.
Please note that publication matches are limited to 40 in this view. If you expected more, please view all publication matches for Amino Acid Motifs.
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Publications
- Control of hepatic gluconeogenesis through the transcriptional coactivator PGC-1.
Yoon JC, Puigserver P, Chen G, Donovan J, Wu Z, Rhee J, Adelmant G, Stafford J, Kahn CR, Granner DK, Newgard CB, Spiegelman BM
(2001) Nature 413: 131-8 - Proof of principle for epitope-focused vaccine design.
Correia BE, Bates JT, Loomis RJ, Baneyx G, Carrico C, Jardine JG, Rupert P, Correnti C, Kalyuzhniy O, Vittal V, Connell MJ, Stevens E, Schroeter A, Chen M, Macpherson S, Serra AM, Adachi Y, Holmes MA, Li Y, Klevit RE, Graham BS, Wyatt RT, Baker D, Strong RK, Crowe JE, Johnson PR, Schief WR
(2014) Nature 507: 201-6 - The landscape of recombination in African Americans.
Hinch AG, Tandon A, Patterson N, Song Y, Rohland N, Palmer CD, Chen GK, Wang K, Buxbaum SG, Akylbekova EL, Aldrich MC, Ambrosone CB, Amos C, Bandera EV, Berndt SI, Bernstein L, Blot WJ, Bock CH, Boerwinkle E, Cai Q, Caporaso N, Casey G, Cupples LA, Deming SL, Diver WR, Divers J, Fornage M, Gillanders EM, Glessner J, Harris CC, Hu JJ, Ingles SA, Isaacs W, John EM, Kao WH, Keating B, Kittles RA, Kolonel LN, Larkin E, Le Marchand L, McNeill LH, Millikan RC, Murphy A, Musani S, Neslund-Dudas C, Nyante S, Papanicolaou GJ, Press MF, Psaty BM, Reiner AP, Rich SS, Rodriguez-Gil JL, Rotter JI, Rybicki BA, Schwartz AG, Signorello LB, Spitz M, Strom SS, Thun MJ, Tucker MA, Wang Z, Wiencke JK, Witte JS, Wrensch M, Wu X, Yamamura Y, Zanetti KA, Zheng W, Ziegler RG, Zhu X, Redline S, Hirschhorn JN, Henderson BE, Taylor HA, Price AL, Hakonarson H, Chanock SJ, Haiman CA, Wilson JG, Reich D, Myers SR
(2011) Nature 476: 170-5 - Interleukin-4 and interleukin-13 signaling connections maps.
Kelly-Welch AE, Hanson EM, Boothby MR, Keegan AD
(2003) Science 300: 1527-8 - Role of Rpn11 metalloprotease in deubiquitination and degradation by the 26S proteasome.
Verma R, Aravind L, Oania R, McDonald WH, Yates JR, Koonin EV, Deshaies RJ
(2002) Science 298: 611-5 - Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution.
Lange OF, Lakomek NA, Farès C, Schröder GF, Walter KF, Becker S, Meiler J, Grubmüller H, Griesinger C, de Groot BL
(2008) Science 320: 1471-5 - Structural biology. Controlling the caspases.
Fesik SW, Shi Y
(2001) Science 294: 1477-8 - The amyloid precursor protein has a flexible transmembrane domain and binds cholesterol.
Barrett PJ, Song Y, Van Horn WD, Hustedt EJ, Schafer JM, Hadziselimovic A, Beel AJ, Sanders CR
(2012) Science 336: 1168-71 - Global analysis of protein activities using proteome chips.
Zhu H, Bilgin M, Bangham R, Hall D, Casamayor A, Bertone P, Lan N, Jansen R, Bidlingmaier S, Houfek T, Mitchell T, Miller P, Dean RA, Gerstein M, Snyder M
(2001) Science 293: 2101-5 - Breaking the code of DNA binding specificity of TAL-type III effectors.
Boch J, Scholze H, Schornack S, Landgraf A, Hahn S, Kay S, Lahaye T, Nickstadt A, Bonas U
(2009) Science 326: 1509-12 - Relating form and function of EF-hand calcium binding proteins.
Chazin WJ
(2011) Acc Chem Res 44: 171-9 - A novel mitochondrial septin-like protein, ARTS, mediates apoptosis dependent on its P-loop motif.
Larisch S, Yi Y, Lotan R, Kerner H, Eimerl S, Tony Parks W, Gottfried Y, Birkey Reffey S, de Caestecker MP, Danielpour D, Book-Melamed N, Timberg R, Duckett CS, Lechleider RJ, Steller H, Orly J, Kim SJ, Roberts AB
(2000) Nat Cell Biol 2: 915-21 - Osteopontin as a mediator of NKT cell function in T cell-mediated liver diseases.
Diao H, Kon S, Iwabuchi K, Kimura C, Morimoto J, Ito D, Segawa T, Maeda M, Hamuro J, Nakayama T, Taniguchi M, Yagita H, Van Kaer L, Onóe K, Denhardt D, Rittling S, Uede T
(2004) Immunity 21: 539-50 - ER stress induces cleavage of membrane-bound ATF6 by the same proteases that process SREBPs.
Ye J, Rawson RB, Komuro R, Chen X, Davé UP, Prywes R, Brown MS, Goldstein JL
(2000) Mol Cell 6: 1355-64 - Interaction with WDR5 promotes target gene recognition and tumorigenesis by MYC.
Thomas LR, Wang Q, Grieb BC, Phan J, Foshage AM, Sun Q, Olejniczak ET, Clark T, Dey S, Lorey S, Alicie B, Howard GC, Cawthon B, Ess KC, Eischen CM, Zhao Z, Fesik SW, Tansey WP
(2015) Mol Cell 58: 440-52 - TopBP1 activates ATR through ATRIP and a PIKK regulatory domain.
Mordes DA, Glick GG, Zhao R, Cortez D
(2008) Genes Dev 22: 1478-89 - Phosphatidylserine flipping enhances membrane curvature and negative charge required for vesicular transport.
Xu P, Baldridge RD, Chi RJ, Burd CG, Graham TR
(2013) J Cell Biol 202: 875-86 - Molecular basis for PrimPol recruitment to replication forks by RPA.
Guilliam TA, Brissett NC, Ehlinger A, Keen BA, Kolesar P, Taylor EM, Bailey LJ, Lindsay HD, Chazin WJ, Doherty AJ
(2017) Nat Commun 8: 15222 - Structure of the C-terminal half of UvrC reveals an RNase H endonuclease domain with an Argonaute-like catalytic triad.
Karakas E, Truglio JJ, Croteau D, Rhau B, Wang L, Van Houten B, Kisker C
(2007) EMBO J 26: 613-22 - Mapping histone fold TAFs within yeast TFIID.
Leurent C, Sanders S, Ruhlmann C, Mallouh V, Weil PA, Kirschner DB, Tora L, Schultz P
(2002) EMBO J 21: 3424-33 - Myristoylated Naked2 escorts transforming growth factor alpha to the basolateral plasma membrane of polarized epithelial cells.
Li C, Franklin JL, Graves-Deal R, Jerome WG, Cao Z, Coffey RJ
(2004) Proc Natl Acad Sci U S A 101: 5571-6 - Calcium-dependent regulation of the voltage-gated sodium channel hH1: intrinsic and extrinsic sensors use a common molecular switch.
Shah VN, Wingo TL, Weiss KL, Williams CK, Balser JR, Chazin WJ
(2006) Proc Natl Acad Sci U S A 103: 3592-7 - The auxilin-like phosphoprotein Swa2p is required for clathrin function in yeast.
Gall WE, Higginbotham MA, Chen C, Ingram MF, Cyr DM, Graham TR
(2000) Curr Biol 10: 1349-58 - Functional analysis of the cytoplasmic domain of the integrin {alpha}1 subunit in endothelial cells.
Abair TD, Bulus N, Borza C, Sundaramoorthy M, Zent R, Pozzi A
(2008) Blood 112: 3242-54 - Human podocytes adhere to the KRGDS motif of the alpha3alpha4alpha5 collagen IV network.
Borza CM, Borza DB, Pedchenko V, Saleem MA, Mathieson PW, Sado Y, Hudson HM, Pozzi A, Saus J, Abrahamson DR, Zent R, Hudson BG
(2008) J Am Soc Nephrol 19: 677-84 - HER4 D-box sequences regulate mitotic progression and degradation of the nuclear HER4 cleavage product s80HER4.
Strunk KE, Husted C, Miraglia LC, Sandahl M, Rearick WA, Hunter DM, Earp HS, Muraoka-Cook RS
(2007) Cancer Res 67: 6582-90 - Proapoptotic Bid mediates the Atr-directed DNA damage response to replicative stress.
Liu Y, Bertram CC, Shi Q, Zinkel SS
(2011) Cell Death Differ 18: 841-52 - Targeted next-generation sequencing of DNA regions proximal to a conserved GXGXXG signaling motif enables systematic discovery of tyrosine kinase fusions in cancer.
Chmielecki J, Peifer M, Jia P, Socci ND, Hutchinson K, Viale A, Zhao Z, Thomas RK, Pao W
(2010) Nucleic Acids Res 38: 6985-96 - A novel manganese-dependent ATM-p53 signaling pathway is selectively impaired in patient-based neuroprogenitor and murine striatal models of Huntington's disease.
Tidball AM, Bryan MR, Uhouse MA, Kumar KK, Aboud AA, Feist JE, Ess KC, Neely MD, Aschner M, Bowman AB
(2015) Hum Mol Genet 24: 1929-44 - Helicobacter pylori CagA targets gastric tumor suppressor RUNX3 for proteasome-mediated degradation.
Tsang YH, Lamb A, Romero-Gallo J, Huang B, Ito K, Peek RM, Ito Y, Chen LF
(2010) Oncogene 29: 5643-50 - Interaction of MYC with host cell factor-1 is mediated by the evolutionarily conserved Myc box IV motif.
Thomas LR, Foshage AM, Weissmiller AM, Popay TM, Grieb BC, Qualls SJ, Ng V, Carboneau B, Lorey S, Eischen CM, Tansey WP
(2016) Oncogene 35: 3613-8 - The angiostatic activity of interferon-inducible protein-10/CXCL10 in human melanoma depends on binding to CXCR3 but not to glycosaminoglycan.
Yang J, Richmond A
(2004) Mol Ther 9: 846-55 - Jedi-1 and MEGF10 signal engulfment of apoptotic neurons through the tyrosine kinase Syk.
Scheib JL, Sullivan CS, Carter BD
(2012) J Neurosci 32: 13022-31 - Postsynaptic targeting of alternative postsynaptic density-95 isoforms by distinct mechanisms.
Chetkovich DM, Bunn RC, Kuo SH, Kawasaki Y, Kohwi M, Bredt DS
(2002) J Neurosci 22: 6415-25 - Talin regulates integrin β1-dependent and -independent cell functions in ureteric bud development.
Mathew S, Palamuttam RJ, Mernaugh G, Ramalingam H, Lu Z, Zhang MZ, Ishibe S, Critchley DR, Fässler R, Pozzi A, Sanders CR, Carroll TJ, Zent R
(2017) Development 144: 4148-4158 - Structural and functional characterization of pi bulges and other short intrahelical deformations.
Cartailler JP, Luecke H
(2004) Structure 12: 133-44 - Structure and specific RNA binding of ADAR2 double-stranded RNA binding motifs.
Stefl R, Xu M, Skrisovska L, Emeson RB, Allain FH
(2006) Structure 14: 345-55 - The Prp19 WD40 domain contains a conserved protein interaction region essential for its function.
Vander Kooi CW, Ren L, Xu P, Ohi MD, Gould KL, Chazin WJ
(2010) Structure 18: 584-93 - Structural basis for DNA binding by replication initiator Mcm10.
Warren EM, Vaithiyalingam S, Haworth J, Greer B, Bielinsky AK, Chazin WJ, Eichman BF
(2008) Structure 16: 1892-901 - Conserved Wat1/Pop3 WD-repeat protein of fission yeast secures genome stability through microtubule integrity and may be involved in mRNA maturation.
Ochotorena IL, Hirata D, Kominami K, Potashkin J, Sahin F, Wentz-Hunter K, Gould KL, Sato K, Yoshida Y, Vardy L, Toda T
(2001) J Cell Sci 114: 2911-20
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