Interactions of carcinogen-bound DNA with individual DNA polymerases. Guengerich FP (2006) Chem Rev 106: 420-52 DNA bend direction by phase sensitive detection. Zinkel SS, Crothers DM (1987) Nature 328: 178-81 Structure of tobacco mosaic virus at 6.7 å resolution. Holmes KC, Stubbs GJ, Mandelkow E, Gallwitz U (1975) Nature 254: 192-6 Removal of the Alu structural domain from signal recognition particle leaves its protein translocation activity intact. Siegel V, Walter P (1986) Nature 320: 81-4 Structure of RNA and RNA binding site in tobacco mosaic virus from 4-A map calculated from X-ray fibre diagrams. Stubbs G, Warren S, Holmes K (1977) Nature 267: 216-21 An unprecedented nucleic acid capture mechanism for excision of DNA damage. Rubinson EH, Gowda AS, Spratt TE, Gold B, Eichman BF (2010) Nature 468: 406-11 Evolutionary flux of canonical microRNAs and mirtrons in Drosophila. Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC (2010) Nat Genet 42: 6-9; author reply 9-10 Placement and orientation of individual DNA shapes on lithographically patterned surfaces. Kershner RJ, Bozano LD, Micheel CM, Hung AM, Fornof AR, Cha JN, Rettner CT, Bersani M, Frommer J, Rothemund PW, Wallraff GM (2009) Nat Nanotechnol 4: 557-61 The long and winding road to the structure of homo-DNA. Egli M, Lubini P, Pallan PS (2007) Chem Soc Rev 36: 31-45 Lone pair-aromatic interactions: to stabilize or not to stabilize. Egli M, Sarkhel S (2007) Acc Chem Res 40: 197-205 Looking for Waldo: a potential thermodynamic signature to DNA damage. Gold B, Stone MP, Marky LA (2014) Acc Chem Res 47: 1446-54 Functions and mechanisms of RNA editing. Gott JM, Emeson RB (2000) Annu Rev Genet 34: 499-531 HLTF's Ancient HIRAN Domain Binds 3' DNA Ends to Drive Replication Fork Reversal. Kile AC, Chavez DA, Bacal J, Eldirany S, Korzhnev DM, Bezsonova I, Eichman BF, Cimprich KA (2015) Mol Cell 58: 1090-100 Checkpoint signaling from a single DNA interstrand crosslink. Ben-Yehoyada M, Wang LC, Kozekov ID, Rizzo CJ, Gottesman ME, Gautier J (2009) Mol Cell 35: 704-15 Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes. Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M (2007) Genome Res 17: 1865-79 Asymmetries in the nucleosome core particle at 2.5 A resolution. Harp JM, Hanson BL, Timm DE, Bunick GJ (2000) Acta Crystallogr D Biol Crystallogr 56: 1513-34 Why does TNA cross-pair more strongly with RNA than with DNA? an answer from X-ray analysis. Pallan PS, Wilds CJ, Wawrzak Z, Krishnamurthy R, Eschenmoser A, Egli M (2003) Angew Chem Int Ed Engl 42: 5893-5 Direct observation of a cytosine analogue that forms five hydrogen bonds to guanosine: guanidino G-clamp. Wilds CJ, Maier MA, Tereshko V, Manoharan M, Egli M (2002) Angew Chem Int Ed Engl 41: 115-7 2'-Fluoro RNA shows increased Watson-Crick H-bonding strength and stacking relative to RNA: evidence from NMR and thermodynamic data. Patra A, Paolillo M, Charisse K, Manoharan M, Rozners E, Egli M (2012) Angew Chem Int Ed Engl 51: 11863-6 Two-dimensional nanoparticle arrays show the organizational power of robust DNA motifs. Zheng J, Constantinou PE, Micheel C, Alivisatos AP, Kiehl RA, Seeman NC (2006) Nano Lett 6: 1502-4 The diversity present in 5140 human mitochondrial genomes. Pereira L, Freitas F, Fernandes V, Pereira JB, Costa MD, Costa S, Máximo V, Macaulay V, Rocha R, Samuels DC (2009) Am J Hum Genet 84: 628-40 Interconversion of the cis-5R,6S- and trans-5R,6R-thymine glycol lesions in duplex DNA. Brown KL, Adams T, Jasti VP, Basu AK, Stone MP (2008) J Am Chem Soc 130: 11701-10 Interplay of structure, hydration and thermal stability in formacetal modified oligonucleotides: RNA may tolerate nonionic modifications better than DNA. Kolarovic A, Schweizer E, Greene E, Gironda M, Pallan PS, Egli M, Rozners E (2009) J Am Chem Soc 131: 14932-7 Rearrangement of the (6S,8R,11S) and (6R,8S,11R) exocyclic 1,N2-deoxyguanosine adducts of trans-4-hydroxynonenal to N2-deoxyguanosine cyclic hemiacetal adducts when placed complementary to cytosine in duplex DNA. Huang H, Wang H, Qi N, Kozekova A, Rizzo CJ, Stone MP (2008) J Am Chem Soc 130: 10898-906 Structure of a tethered cationic 3-aminopropyl chain incorporated into an oligodeoxynucleotide: evidence for 3'-orientation in the major groove accompanied by DNA bending. Li Z, Huang L, Dande P, Gold B, Stone MP (2002) J Am Chem Soc 124: 8553-60 NMR determination of the conformation of a trimethylene interstrand cross-link in an oligodeoxynucleotide duplex containing a 5'-d(GpC) motif. Dooley PA, Zhang M, Korbel GA, Nechev LV, Harris CM, Stone MP, Harris TM (2003) J Am Chem Soc 125: 62-72 Structural rationalization of a large difference in RNA affinity despite a small difference in chemistry between two 2'-O-modified nucleic acid analogues. Pattanayek R, Sethaphong L, Pan C, Prhavc M, Prakash TP, Manoharan M, Egli M (2004) J Am Chem Soc 126: 15006-7 Unraveling the aflatoxin-FAPY conundrum: structural basis for differential replicative processing of isomeric forms of the formamidopyrimidine-type DNA adduct of aflatoxin B1. Brown KL, Deng JZ, Iyer RS, Iyer LG, Voehler MW, Stone MP, Harris CM, Harris TM (2006) J Am Chem Soc 128: 15188-99 Structural perturbations induced by the alpha-anomer of the aflatoxin B(1) formamidopyrimidine adduct in duplex and single-strand DNA. Brown KL, Voehler MW, Magee SM, Harris CM, Harris TM, Stone MP (2009) J Am Chem Soc 131: 16096-107 Face-to-face and edge-to-face pi-pi interactions in a synthetic DNA hairpin with a stilbenediether linker. Egli M, Tereshko V, Mushudov GN, Sanishvili R, Liu X, Lewis FD (2003) J Am Chem Soc 125: 10842-9 Selenium-assisted nucleic acid crystallography: use of phosphoroselenoates for MAD phasing of a DNA structure. Wilds CJ, Pattanayek R, Pan C, Wawrzak Z, Egli M (2002) J Am Chem Soc 124: 14910-6 Crystal structure of a B-form DNA duplex containing (L)-alpha-threofuranosyl (3'-->2') nucleosides: a four-carbon sugar is easily accommodated into the backbone of DNA. Wilds CJ, Wawrzak Z, Krishnamurthy R, Eschenmoser A, Egli M (2002) J Am Chem Soc 124: 13716-21 Water-nucleobase "stacking": H-pi and lone pair-pi interactions in the atomic resolution crystal structure of an RNA pseudoknot. Sarkhel S, Rich A, Egli M (2003) J Am Chem Soc 125: 8998-9 Structure of (5'S)-8,5'-cyclo-2'-deoxyguanosine in DNA. Huang H, Das RS, Basu AK, Stone MP (2011) J Am Chem Soc 133: 20357-68 Determination of aliphatic side-chain conformation using cross-correlated relaxation: application to an extraordinarily stable 2'-aminoethoxy-modified oligonucleotide triplex. Carlomagno T, Blommers MJ, Meiler J, Cuenoud B, Griesinger C (2001) J Am Chem Soc 123: 7364-70 Crystal structure of homo-DNA and nature's choice of pentose over hexose in the genetic system. Egli M, Pallan PS, Pattanayek R, Wilds CJ, Lubini P, Minasov G, Dobler M, Leumann CJ, Eschenmoser A (2006) J Am Chem Soc 128: 10847-56 Stereospecific formation of the (R)-gamma-hydroxytrimethylene interstrand N2-dG:N2-dG cross-link arising from the gamma-OH-1,N2-propano-2'-deoxyguanosine adduct in the 5'-CpG-3' DNA sequence. Huang H, Kim HY, Kozekov ID, Cho YJ, Wang H, Kozekova A, Harris TM, Rizzo CJ, Stone MP (2009) J Am Chem Soc 131: 8416-24 Evidence for variable selective pressures at a large secondary structure of the human mitochondrial DNA control region. Pereira F, Soares P, Carneiro J, Pereira L, Richards MB, Samuels DC, Amorim A (2008) Mol Biol Evol 25: 2759-70 DNA damage recognition and repair by 3-methyladenine DNA glycosylase I (TAG). Metz AH, Hollis T, Eichman BF (2007) EMBO J 26: 2411-20 Eukaryotic topoisomerases recognize nucleic acid topology by preferentially interacting with DNA crossovers. Zechiedrich EL, Osheroff N (1990) EMBO J 9: 4555-62
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