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Creative Data Solutions (CDS) is a Vanderbilt Shared Resource and has extensive experience in providing effective and robust solutions to challenges pertaining to research data using modern informatics and bioinformatics approaches.
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Publications
- Genetic ancestry in lung-function predictions.
Kumar R, Seibold MA, Aldrich MC, Williams LK, Reiner AP, Colangelo L, Galanter J, Gignoux C, Hu D, Sen S, Choudhry S, Peterson EL, Rodriguez-Santana J, Rodriguez-Cintron W, Nalls MA, Leak TS, O'Meara E, Meibohm B, Kritchevsky SB, Li R, Harris TB, Nickerson DA, Fornage M, Enright P, Ziv E, Smith LJ, Liu K, Burchard EG
(2010) N Engl J Med 363: 321-30 - Long-term cognitive impairment after critical illness.
Pandharipande PP, Girard TD, Jackson JC, Morandi A, Thompson JL, Pun BT, Brummel NE, Hughes CG, Vasilevskis EE, Shintani AK, Moons KG, Geevarghese SK, Canonico A, Hopkins RO, Bernard GR, Dittus RS, Ely EW, BRAIN-ICU Study Investigators
(2013) N Engl J Med 369: 1306-16 - Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma.
Addona TA, Abbatiello SE, Schilling B, Skates SJ, Mani DR, Bunk DM, Spiegelman CH, Zimmerman LJ, Ham AJ, Keshishian H, Hall SC, Allen S, Blackman RK, Borchers CH, Buck C, Cardasis HL, Cusack MP, Dodder NG, Gibson BW, Held JM, Hiltke T, Jackson A, Johansen EB, Kinsinger CR, Li J, Mesri M, Neubert TA, Niles RK, Pulsipher TC, Ransohoff D, Rodriguez H, Rudnick PA, Smith D, Tabb DL, Tegeler TJ, Variyath AM, Vega-Montoto LJ, Wahlander A, Waldemarson S, Wang M, Whiteaker JR, Zhao L, Anderson NL, Fisher SJ, Liebler DC, Paulovich AG, Regnier FE, Tempst P, Carr SA
(2009) Nat Biotechnol 27: 633-41 - Neural control of voluntary movement initiation.
Hanes DP, Schall JD
(1996) Science 274: 427-30 - The effectiveness of right heart catheterization in the initial care of critically ill patients. SUPPORT Investigators.
Connors AF, Speroff T, Dawson NV, Thomas C, Harrell FE, Wagner D, Desbiens N, Goldman L, Wu AW, Califf RM, Fulkerson WJ, Vidaillet H, Broste S, Bellamy P, Lynn J, Knaus WA
(1996) JAMA 276: 889-97 - Factor V Leiden protects against blood loss and transfusion after cardiac surgery.
Donahue BS, Gailani D, Higgins MS, Drinkwater DC, George AL
(2003) Circulation 107: 1003-8 - Higher Aortic Stiffness Is Related to Lower Cerebral Blood Flow and Preserved Cerebrovascular Reactivity in Older Adults.
Jefferson AL, Cambronero FE, Liu D, Moore EE, Neal JE, Terry JG, Nair S, Pechman KR, Rane S, Davis LT, Gifford KA, Hohman TJ, Bell SP, Wang TJ, Beckman JA, Carr JJ
(2018) Circulation 138: 1951-1962 - Association of colony-forming units with coronary artery and abdominal aortic calcification.
Cheng S, Cohen KS, Shaw SY, Larson MG, Hwang SJ, McCabe EL, Martin RP, Klein RJ, Hashmi B, Hoffmann U, Fox CS, Vasan RS, O'Donnell CJ, Wang TJ
(2010) Circulation 122: 1176-82 - CalR: A Web-Based Analysis Tool for Indirect Calorimetry Experiments.
Mina AI, LeClair RA, LeClair KB, Cohen DE, Lantier L, Banks AS
(2018) Cell Metab 28: 656-666.e1 - Genetic modification of the relationship between phosphorylated tau and neurodegeneration.
Hohman TJ, Koran ME, Thornton-Wells TA, Alzheimer's Disease Neuroimaging Initiative
(2014) Alzheimers Dement 10: 637-645.e1 - Cross-sectional relations of electrocardiographic QRS duration to left ventricular dimensions: the Framingham Heart Study.
Dhingra R, Ho Nam B, Benjamin EJ, Wang TJ, Larson MG, D'Agostino RB, Levy D, Vasan RS
(2005) J Am Coll Cardiol 45: 685-9 - Association of numeracy and diabetes control.
Cavanaugh K, Huizinga MM, Wallston KA, Gebretsadik T, Shintani A, Davis D, Gregory RP, Fuchs L, Malone R, Cherrington A, Pignone M, DeWalt DA, Elasy TA, Rothman RL
(2008) Ann Intern Med 148: 737-46 - Alcohol Use and Cardiovascular Disease Risk in Patients With Nonalcoholic Fatty Liver Disease.
VanWagner LB, Ning H, Allen NB, Ajmera V, Lewis CE, Carr JJ, Lloyd-Jones DM, Terrault NA, Siddique J
(2017) Gastroenterology 153: 1260-1272.e3 - Integrative network analysis reveals molecular mechanisms of blood pressure regulation.
Huan T, Meng Q, Saleh MA, Norlander AE, Joehanes R, Zhu J, Chen BH, Zhang B, Johnson AD, Ying S, Courchesne P, Raghavachari N, Wang R, Liu P, International Consortium for Blood Pressure GWAS (ICBP), O'Donnell CJ, Vasan R, Munson PJ, Madhur MS, Harrison DG, Yang X, Levy D
(2015) Mol Syst Biol 11: 799 - Cross-tissue and tissue-specific eQTLs: partitioning the heritability of a complex trait.
Torres JM, Gamazon ER, Parra EJ, Below JE, Valladares-Salgado A, Wacher N, Cruz M, Hanis CL, Cox NJ
(2014) Am J Hum Genet 95: 521-34 - Disease-specific gene expression profiling in multiple models of lung disease.
Lewis CC, Yang JY, Huang X, Banerjee SK, Blackburn MR, Baluk P, McDonald DM, Blackwell TS, Nagabhushanam V, Peters W, Voehringer D, Erle DJ
(2008) Am J Respir Crit Care Med 177: 376-87 - Effect of ambient air pollution on pulmonary exacerbations and lung function in cystic fibrosis.
Goss CH, Newsom SA, Schildcrout JS, Sheppard L, Kaufman JD
(2004) Am J Respir Crit Care Med 169: 816-21 - Differential expression analysis for sequence count data.
Anders S, Huber W
(2010) Genome Biol 11: R106 - A genome-wide approach to identify genetic variants that contribute to etoposide-induced cytotoxicity.
Huang RS, Duan S, Bleibel WK, Kistner EO, Zhang W, Clark TA, Chen TX, Schweitzer AC, Blume JE, Cox NJ, Dolan ME
(2007) Proc Natl Acad Sci U S A 104: 9758-63 - High-resolution imaging of expertise reveals reliable object selectivity in the fusiform face area related to perceptual performance.
McGugin RW, Gatenby JC, Gore JC, Gauthier I
(2012) Proc Natl Acad Sci U S A 109: 17063-8 - A comparison of iothalamate-GFR and serum creatinine-based outcomes: acceleration in the rate of GFR decline in the African American Study of Kidney Disease and Hypertension.
Lewis J, Greene T, Appel L, Contreras G, Douglas J, Lash J, Toto R, Van Lente F, Wang X, Wright JT, AASK Study Group
(2004) J Am Soc Nephrol 15: 3175-83 - Increased CSF F2-isoprostane concentration in probable AD.
Montine TJ, Beal MF, Cudkowicz ME, O'Donnell H, Margolin RA, McFarland L, Bachrach AF, Zackert WE, Roberts LJ, Morrow JD
(1999) Neurology 52: 562-5 - Dietary phosphorus is associated with greater left ventricular mass.
Yamamoto KT, Robinson-Cohen C, de Oliveira MC, Kostina A, Nettleton JA, Ix JH, Nguyen H, Eng J, Lima JA, Siscovick DS, Weiss NS, Kestenbaum B
(2013) Kidney Int 83: 707-14 - The serum 24,25-dihydroxyvitamin D concentration, a marker of vitamin D catabolism, is reduced in chronic kidney disease.
Bosworth CR, Levin G, Robinson-Cohen C, Hoofnagle AN, Ruzinski J, Young B, Schwartz SM, Himmelfarb J, Kestenbaum B, de Boer IH
(2012) Kidney Int 82: 693-700 - Associations among perceived and objective disease knowledge and satisfaction with physician communication in patients with chronic kidney disease.
Wright Nunes JA, Wallston KA, Eden SK, Shintani AK, Ikizler TA, Cavanaugh KL
(2011) Kidney Int 80: 1344-51 - Association of parental obesity with concentrations of select systemic biomarkers in nonobese offspring: the Framingham Heart Study.
Lieb W, Pencina MJ, Lanier KJ, Tofler GH, Levy D, Fox CS, Wang TJ, D'Agostino RB, Vasan RS
(2009) Diabetes 58: 134-7 - An eQTL-based method identifies CTTN and ZMAT3 as pemetrexed susceptibility markers.
Wen Y, Gamazon ER, Bleibel WK, Wing C, Mi S, McIlwee BE, Delaney SM, Duan S, Im HK, Dolan ME
(2012) Hum Mol Genet 21: 1470-80 - The chromosome 3q25 genomic region is associated with measures of adiposity in newborns in a multi-ethnic genome-wide association study.
Urbanek M, Hayes MG, Armstrong LL, Morrison J, Lowe LP, Badon SE, Scheftner D, Pluzhnikov A, Levine D, Laurie CC, McHugh C, Ackerman CM, Mirel DB, Doheny KF, Guo C, Scholtens DM, Dyer AR, Metzger BE, Reddy TE, Cox NJ, Lowe WL, HAPO Study Cooperative Research Group
(2013) Hum Mol Genet 22: 3583-96 - Genome-wide association study of age at menarche in African-American women.
Demerath EW, Liu CT, Franceschini N, Chen G, Palmer JR, Smith EN, Chen CT, Ambrosone CB, Arnold AM, Bandera EV, Berenson GS, Bernstein L, Britton A, Cappola AR, Carlson CS, Chanock SJ, Chen W, Chen Z, Deming SL, Elks CE, Evans MK, Gajdos Z, Henderson BE, Hu JJ, Ingles S, John EM, Kerr KF, Kolonel LN, Le Marchand L, Lu X, Millikan RC, Musani SK, Nock NL, North K, Nyante S, Press MF, Rodriquez-Gil JL, Ruiz-Narvaez EA, Schork NJ, Srinivasan SR, Woods NF, Zheng W, Ziegler RG, Zonderman A, Heiss G, Gwen Windham B, Wellons M, Murray SS, Nalls M, Pastinen T, Rajkovic A, Hirschhorn J, Adrienne Cupples L, Kooperberg C, Murabito JM, Haiman CA
(2013) Hum Mol Genet 22: 3329-46 - Neural basis of adaptive response time adjustment during saccade countermanding.
Pouget P, Logan GD, Palmeri TJ, Boucher L, Paré M, Schall JD
(2011) J Neurosci 31: 12604-12 - Ventral striatal network connectivity reflects reward learning and behavior in patients with Parkinson's disease.
Petersen K, Van Wouwe N, Stark A, Lin YC, Kang H, Trujillo-Diaz P, Kessler R, Zald D, Donahue MJ, Claassen DO
(2018) Hum Brain Mapp 39: 509-521 - Uncoupling of the baroreflex by N(N)-cholinergic blockade in dissecting the components of cardiovascular regulation.
Shannon JR, Jordan J, Black BK, Costa F, Robertson D
(1998) Hypertension 32: 101-7 - Dietary glycemic index, glycemic load, and refined carbohydrates are associated with risk of stroke: a prospective cohort study in urban Chinese women.
Yu D, Zhang X, Shu XO, Cai H, Li H, Ding D, Hong Z, Xiang YB, Gao YT, Zheng W, Yang G
(2016) Am J Clin Nutr 104: 1345-1351 - Body mass index and fat mass are the primary correlates of insulin resistance in nondiabetic stage 3-4 chronic kidney disease patients.
Trirogoff ML, Shintani A, Himmelfarb J, Ikizler TA
(2007) Am J Clin Nutr 86: 1642-8 - Equation to estimate resting energy expenditure in adolescents with sickle cell anemia.
Buchowski MS, Chen KY, Byrne D, Wang WC
(2002) Am J Clin Nutr 76: 1335-44 - Major metabolite of F2-isoprostane in urine may be a more sensitive biomarker of oxidative stress than isoprostane itself.
Dorjgochoo T, Gao YT, Chow WH, Shu XO, Yang G, Cai Q, Rothman N, Cai H, Li H, Deng X, Franke A, Roberts LJ, Milne G, Zheng W, Dai Q
(2012) Am J Clin Nutr 96: 405-14 - Enhanced in vivo lipid peroxidation at elevated plasma total homocysteine levels.
Voutilainen S, Morrow JD, Roberts LJ, Alfthan G, Alho H, Nyyssönen K, Salonen JT
(1999) Arterioscler Thromb Vasc Biol 19: 1263-6 - Circulating insulin-like growth factor-1 and its binding protein-3: metabolic and genetic correlates in the community.
Lam CS, Chen MH, Lacey SM, Yang Q, Sullivan LM, Xanthakis V, Safa R, Smith HM, Peng X, Sawyer DB, Vasan RS
(2010) Arterioscler Thromb Vasc Biol 30: 1479-84 - Impact of Expanded Insurance Coverage on Racial Disparities in Vascular Disease: Insights From Massachusetts.
Loehrer AP, Hawkins AT, Auchincloss HG, Song Z, Hutter MM, Patel VI
(2016) Ann Surg 263: 705-11 - Statistical parametric mapping of brain morphology: sensitivity is dramatically increased by using brain-extracted images as inputs.
Fein G, Landman B, Tran H, Barakos J, Moon K, Di Sclafani V, Shumway R
(2006) Neuroimage 30: 1187-95
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