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Creative Data Solutions (CDS) is a Vanderbilt Shared Resource and has extensive experience in providing effective and robust solutions to challenges pertaining to research data using modern informatics and bioinformatics approaches.
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Publications
- Cloning and expression of a functional serotonin transporter from rat brain.
Blakely RD, Berson HE, Fremeau RT, Caron MG, Peek MM, Prince HK, Bradley CC
(1991) Nature 354: 66-70 - Opposing effects of polyglutamine expansion on native protein complexes contribute to SCA1.
Lim J, Crespo-Barreto J, Jafar-Nejad P, Bowman AB, Richman R, Hill DE, Orr HT, Zoghbi HY
(2008) Nature 452: 713-8 - Expression cloning of a cocaine- and antidepressant-sensitive human noradrenaline transporter.
Pacholczyk T, Blakely RD, Amara SG
(1991) Nature 350: 350-4 - The K-Cl cotransporter KCC3 is mutant in a severe peripheral neuropathy associated with agenesis of the corpus callosum.
Howard HC, Mount DB, Rochefort D, Byun N, Dupré N, Lu J, Fan X, Song L, Rivière JB, Prévost C, Horst J, Simonati A, Lemcke B, Welch R, England R, Zhan FQ, Mercado A, Siesser WB, George AL, McDonald MP, Bouchard JP, Mathieu J, Delpire E, Rouleau GA
(2002) Nat Genet 32: 384-92 - Global analysis of protein activities using proteome chips.
Zhu H, Bilgin M, Bangham R, Hall D, Casamayor A, Bertone P, Lan N, Jansen R, Bidlingmaier S, Houfek T, Mitchell T, Miller P, Dean RA, Gerstein M, Snyder M
(2001) Science 293: 2101-5 - Assigning function to yeast proteins by integration of technologies.
Hazbun TR, Malmström L, Anderson S, Graczyk BJ, Fox B, Riffle M, Sundin BA, Aranda JD, McDonald WH, Chiu CH, Snydsman BE, Bradley P, Muller EG, Fields S, Baker D, Yates JR, Davis TN
(2003) Mol Cell 12: 1353-65 - A spatial and temporal map of C. elegans gene expression.
Spencer WC, Zeller G, Watson JD, Henz SR, Watkins KL, McWhirter RD, Petersen S, Sreedharan VT, Widmer C, Jo J, Reinke V, Petrella L, Strome S, Von Stetina SE, Katz M, Shaham S, Rätsch G, Miller DM
(2011) Genome Res 21: 325-41 - Genetics and genomics of pulmonary arterial hypertension.
Machado RD, Eickelberg O, Elliott CG, Geraci MW, Hanaoka M, Loyd JE, Newman JH, Phillips JA, Soubrier F, Trembath RC, Chung WK
(2009) J Am Coll Cardiol 54: S32-42 - Cortical dysfunction in schizophrenia during auditory word and tone working memory demonstrated by functional magnetic resonance imaging.
Stevens AA, Goldman-Rakic PS, Gore JC, Fulbright RK, Wexler BE
(1998) Arch Gen Psychiatry 55: 1097-103 - Systematic identification and functional screens of uncharacterized proteins associated with eukaryotic ribosomal complexes.
Fleischer TC, Weaver CM, McAfee KJ, Jennings JL, Link AJ
(2006) Genes Dev 20: 1294-307 - An expressed retrogene of the master embryonic stem cell gene POU5F1 is associated with prostate cancer susceptibility.
Breyer JP, Dorset DC, Clark TA, Bradley KM, Wahlfors TA, McReynolds KM, Maynard WH, Chang SS, Cookson MS, Smith JA, Schleutker J, Dupont WD, Smith JR
(2014) Am J Hum Genet 94: 395-404 - Cerebral organization of component processes in reading.
Pugh KR, Shaywitz BA, Shaywitz SE, Constable RT, Skudlarski P, Fulbright RK, Bronen RA, Shankweiler DP, Katz L, Fletcher JM, Gore JC
(1996) Brain 119 ( Pt 4): 1221-38 - Oxidative cyclizations in orthosomycin biosynthesis expand the known chemistry of an oxygenase superfamily.
McCulloch KM, McCranie EK, Smith JA, Sarwar M, Mathieu JL, Gitschlag BL, Du Y, Bachmann BO, Iverson TM
(2015) Proc Natl Acad Sci U S A 112: 11547-52 - Functional disruption in the organization of the brain for reading in dyslexia.
Shaywitz SE, Shaywitz BA, Pugh KR, Fulbright RK, Constable RT, Mencl WE, Shankweiler DP, Liberman AM, Skudlarski P, Fletcher JM, Katz L, Marchione KE, Lacadie C, Gatenby C, Gore JC
(1998) Proc Natl Acad Sci U S A 95: 2636-41 - Multiplexed transposon-mediated stable gene transfer in human cells.
Kahlig KM, Saridey SK, Kaja A, Daniels MA, George AL, Wilson MH
(2010) Proc Natl Acad Sci U S A 107: 1343-8 - Conserved nucleotide sequences in the open reading frame and 3' untranslated region of selenoprotein P mRNA.
Hill KE, Lloyd RS, Burk RF
(1993) Proc Natl Acad Sci U S A 90: 537-41 - Reverse genetics with a full-length infectious cDNA of severe acute respiratory syndrome coronavirus.
Yount B, Curtis KM, Fritz EA, Hensley LE, Jahrling PB, Prentice E, Denison MR, Geisbert TW, Baric RS
(2003) Proc Natl Acad Sci U S A 100: 12995-3000 - Helicobacter pylori genetic diversity within the gastric niche of a single human host.
Israel DA, Salama N, Krishna U, Rieger UM, Atherton JC, Falkow S, Peek RM
(2001) Proc Natl Acad Sci U S A 98: 14625-30 - Human papillomavirus 16 E6 expression disrupts the p53-mediated cellular response to DNA damage.
Kessis TD, Slebos RJ, Nelson WG, Kastan MB, Plunkett BS, Han SM, Lorincz AT, Hedrick L, Cho KR
(1993) Proc Natl Acad Sci U S A 90: 3988-92 - The univector plasmid-fusion system, a method for rapid construction of recombinant DNA without restriction enzymes.
Liu Q, Li MZ, Leibham D, Cortez D, Elledge SJ
(1998) Curr Biol 8: 1300-9 - Dyslexia: bridging the gap between hearing and reading.
Wallace MT
(2009) Curr Biol 19: R260-2 - An fMRI study of Stroop word-color interference: evidence for cingulate subregions subserving multiple distributed attentional systems.
Peterson BS, Skudlarski P, Gatenby JC, Zhang H, Anderson AW, Gore JC
(1999) Biol Psychiatry 45: 1237-58 - Neural systems for compensation and persistence: young adult outcome of childhood reading disability.
Shaywitz SE, Shaywitz BA, Fulbright RK, Skudlarski P, Mencl WE, Constable RT, Pugh KR, Holahan JM, Marchione KE, Fletcher JM, Lyon GR, Gore JC
(2003) Biol Psychiatry 54: 25-33 - Disruption of posterior brain systems for reading in children with developmental dyslexia.
Shaywitz BA, Shaywitz SE, Pugh KR, Mencl WE, Fulbright RK, Skudlarski P, Constable RT, Marchione KE, Fletcher JM, Lyon GR, Gore JC
(2002) Biol Psychiatry 52: 101-10 - G1 delay in cells overexpressing prostaglandin endoperoxide synthase-2.
DuBois RN, Shao J, Tsujii M, Sheng H, Beauchamp RD
(1996) Cancer Res 56: 733-7 - Nucleotide sequence of mouse SCIP cDNA, a POU-domain transcription factor.
Zimmerman EC, Jones CM, Fet V, Hogan BL, Magnuson MA
(1991) Nucleic Acids Res 19: 956 - Cortical activation during Braille reading is influenced by early visual experience in subjects with severe visual disability: a correlational fMRI study.
Melzer P, Morgan VL, Pickens DR, Price RR, Wall RS, Ebner FF
(2001) Hum Brain Mapp 14: 186-95 - Functional MRI of sentence comprehension in children with dyslexia: beyond word recognition.
Rimrodt SL, Clements-Stephens AM, Pugh KR, Courtney SM, Gaur P, Pekar JJ, Cutting LE
(2009) Cereb Cortex 19: 402-13 - Convergence of spoken and written language processing in the superior temporal sulcus.
Wilson SM, Bautista A, McCarron A
(2018) Neuroimage 171: 62-74 - Differential components of sentence comprehension: beyond single word reading and memory.
Cutting LE, Clements AM, Courtney S, Rimrodt SL, Schafer JG, Bisesi J, Pekar JJ, Pugh KR
(2006) Neuroimage 29: 429-38 - An event-related fMRI study of implicit phrase-level syntactic and semantic processing.
Kang AM, Constable RT, Gore JC, Avrutin S
(1999) Neuroimage 10: 555-61 - Concurrent finger-tapping in mathematically gifted males: evidence for enhanced right hemisphere involvement during linguistic processing.
O'Boyle MW, Gill HS, Benbow CP, Alexander JE
(1994) Cortex 30: 519-26 - Perceptual interaction between real and synesthetic colors.
Kim CY, Blake R, Palmeri TJ
(2006) Cortex 42: 195-203 - Prefrontal mediation of the reading network predicts intervention response in dyslexia.
Aboud KS, Barquero LA, Cutting LE
(2018) Cortex 101: 96-106 - Genetic and environmental influences on the growth of early reading skills.
Petrill SA, Hart SA, Harlaar N, Logan J, Justice LM, Schatschneider C, Thompson L, Dethorne LS, Deater-Deckard K, Cutting L
(2010) J Child Psychol Psychiatry 51: 660-7 - Genome-wide transcriptional dependence on conserved regions of Mot1.
Venters BJ, Irvin JD, Gramlich P, Pugh BF
(2011) Mol Cell Biol 31: 2253-61 - Cluster analysis of mass spectrometry data reveals a novel component of SAGA.
Powell DW, Weaver CM, Jennings JL, McAfee KJ, He Y, Weil PA, Link AJ
(2004) Mol Cell Biol 24: 7249-59 - Evaluating the Merits of CKD Patient Educational Materials: Readability Is Necessary But Not Sufficient.
Tuot DS, Cavanaugh KL
(2015) Am J Kidney Dis 65: 814-6 - Novel FOXF1 mutations in sporadic and familial cases of alveolar capillary dysplasia with misaligned pulmonary veins imply a role for its DNA binding domain.
Sen P, Yang Y, Navarro C, Silva I, Szafranski P, Kolodziejska KE, Dharmadhikari AV, Mostafa H, Kozakewich H, Kearney D, Cahill JB, Whitt M, Bilic M, Margraf L, Charles A, Goldblatt J, Gibson K, Lantz PE, Garvin AJ, Petty J, Kiblawi Z, Zuppan C, McConkie-Rosell A, McDonald MT, Peterson-Carmichael SL, Gaede JT, Shivanna B, Schady D, Friedlich PS, Hays SR, Palafoll IV, Siebers-Renelt U, Bohring A, Finn LS, Siebert JR, Galambos C, Nguyen L, Riley M, Chassaing N, Vigouroux A, Rocha G, Fernandes S, Brumbaugh J, Roberts K, Ho-Ming L, Lo IF, Lam S, Gerychova R, Jezova M, Valaskova I, Fellmann F, Afshar K, Giannoni E, Muhlethaler V, Liang J, Beckmann JS, Lioy J, Deshmukh H, Srinivasan L, Swarr DT, Sloman M, Shaw-Smith C, van Loon RL, Hagman C, Sznajer Y, Barrea C, Galant C, Detaille T, Wambach JA, Cole FS, Hamvas A, Prince LS, Diderich KE, Brooks AS, Verdijk RM, Ravindranathan H, Sugo E, Mowat D, Baker ML, Langston C, Welty S, Stankiewicz P
(2013) Hum Mutat 34: 801-11 - Severe acute respiratory syndrome coronavirus group-specific open reading frames encode nonessential functions for replication in cell cultures and mice.
Yount B, Roberts RS, Sims AC, Deming D, Frieman MB, Sparks J, Denison MR, Davis N, Baric RS
(2005) J Virol 79: 14909-22
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