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Creative Data Solutions (CDS) is a Vanderbilt Shared Resource and has extensive experience in providing effective and robust solutions to challenges pertaining to research data using modern informatics and bioinformatics approaches.
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Publications
- Cetuximab-induced anaphylaxis and IgE specific for galactose-alpha-1,3-galactose.
Chung CH, Mirakhur B, Chan E, Le QT, Berlin J, Morse M, Murphy BA, Satinover SM, Hosen J, Mauro D, Slebos RJ, Zhou Q, Gold D, Hatley T, Hicklin DJ, Platts-Mills TA
(2008) N Engl J Med 358: 1109-17 - Neutralizing antibodies derived from the B cells of 1918 influenza pandemic survivors.
Yu X, Tsibane T, McGraw PA, House FS, Keefer CJ, Hicar MD, Tumpey TM, Pappas C, Perrone LA, Martinez O, Stevens J, Wilson IA, Aguilar PV, Altschuler EL, Basler CF, Crowe JE
(2008) Nature 455: 532-6 - Structural basis for Marburg virus neutralization by a cross-reactive human antibody.
Hashiguchi T, Fusco ML, Bornholdt ZA, Lee JE, Flyak AI, Matsuoka R, Kohda D, Yanagi Y, Hammel M, Crowe JE, Saphire EO
(2015) Cell 160: 904-912 - Cross-Reactive and Potent Neutralizing Antibody Responses in Human Survivors of Natural Ebolavirus Infection.
Flyak AI, Shen X, Murin CD, Turner HL, David JA, Fusco ML, Lampley R, Kose N, Ilinykh PA, Kuzmina N, Branchizio A, King H, Brown L, Bryan C, Davidson E, Doranz BJ, Slaughter JC, Sapparapu G, Klages C, Ksiazek TG, Saphire EO, Ward AB, Bukreyev A, Crowe JE
(2016) Cell 164: 392-405 - Cross-Neutralizing and Protective Human Antibody Specificities to Poxvirus Infections.
Gilchuk I, Gilchuk P, Sapparapu G, Lampley R, Singh V, Kose N, Blum DL, Hughes LJ, Satheshkumar PS, Townsend MB, Kondas AV, Reed Z, Weiner Z, Olson VA, Hammarlund E, Raue HP, Slifka MK, Slaughter JC, Graham BS, Edwards KM, Eisenberg RJ, Cohen GH, Joyce S, Crowe JE
(2016) Cell 167: 684-694.e9 - Structural basis of preexisting immunity to the 2009 H1N1 pandemic influenza virus.
Xu R, Ekiert DC, Krause JC, Hai R, Crowe JE, Wilson IA
(2010) Science 328: 357-60 - DENGUE VIRUS. Cryo-EM structure of an antibody that neutralizes dengue virus type 2 by locking E protein dimers.
Fibriansah G, Ibarra KD, Ng TS, Smith SA, Tan JL, Lim XN, Ooi JS, Kostyuchenko VA, Wang J, de Silva AM, Harris E, Crowe JE, Lok SM
(2015) Science 349: 88-91 - Severe pandemic 2009 H1N1 influenza disease due to pathogenic immune complexes.
Monsalvo AC, Batalle JP, Lopez MF, Krause JC, Klemenc J, Hernandez JZ, Maskin B, Bugna J, Rubinstein C, Aguilar L, Dalurzo L, Libster R, Savy V, Baumeister E, Aguilar L, Cabral G, Font J, Solari L, Weller KP, Johnson J, Echavarria M, Edwards KM, Chappell JD, Crowe JE, Williams JV, Melendi GA, Polack FP
(2011) Nat Med 17: 195-9 - Mechanism of differential Zika and dengue virus neutralization by a public antibody lineage targeting the DIII lateral ridge.
Zhao H, Xu L, Bombardi R, Nargi R, Deng Z, Errico JM, Nelson CA, Dowd KA, Pierson TC, Crowe JE, Diamond MS, Fremont DH
(2020) J Exp Med 217: - Principles of Broad and Potent Antiviral Human Antibodies: Insights for Vaccine Design.
Crowe JE
(2017) Cell Host Microbe 22: 193-206 - Reduction of the antigenicity of factor VIII toward complex inhibitory antibody plasmas using multiply-substituted hybrid human/porcine factor VIII molecules.
Barrow RT, Healey JF, Gailani D, Scandella D, Lollar P
(2000) Blood 95: 564-8 - Specific recognition of human leukemic cells by allogeneic T cells: II. Evidence for HLA-D restricted determinants on leukemic cells that are crossreactive with determinants present on unrelated nonleukemic cells.
Sosman JA, Oettel KR, Smith SD, Hank JA, Fisch P, Sondel PM
(1990) Blood 75: 2005-16 - A monoclonal antibody inhibits adhesion to fibronectin and vitronectin of a colon carcinoma cell line and recognizes the integrins alpha v beta 3, alpha v beta 5, and alpha v beta 6.
Lehmann M, Rabenandrasana C, Tamura R, Lissitzky JC, Quaranta V, Pichon J, Marvaldi J
(1994) Cancer Res 54: 2102-7 - Human proinsulin-specific antigenic determinants identified by monoclonal antibodies.
Madsen OD, Frank BH, Steiner DF
(1984) Diabetes 33: 1012-6 - Cephalexin tolerated despite delayed aminopenicillin reactions.
Phillips E, Knowles SR, Weber EA, Blackburn D
(2001) Allergy 56: 790 - The challenge of de-labeling penicillin allergy.
Stone CA, Trubiano J, Coleman DT, Rukasin CRF, Phillips EJ
(2020) Allergy 75: 273-288 - Evaluation of serologic and antigenic relationships between middle eastern respiratory syndrome coronavirus and other coronaviruses to develop vaccine platforms for the rapid response to emerging coronaviruses.
Agnihothram S, Gopal R, Yount BL, Donaldson EF, Menachery VD, Graham RL, Scobey TD, Gralinski LE, Denison MR, Zambon M, Baric RS
(2014) J Infect Dis 209: 995-1006 - Antibody Determinants of Influenza Immunity.
Crowe JE
(2019) J Infect Dis 219: S21-S29 - Human monoclonal antibodies derived from memory B cells following live attenuated dengue virus vaccination or natural infection exhibit similar characteristics.
Smith SA, de Alwis R, Kose N, Durbin AP, Whitehead SS, de Silva AM, Crowe JE
(2013) J Infect Dis 207: 1898-908 - The potent and broadly neutralizing human dengue virus-specific monoclonal antibody 1C19 reveals a unique cross-reactive epitope on the bc loop of domain II of the envelope protein.
Smith SA, de Alwis AR, Kose N, Harris E, Ibarra KD, Kahle KM, Pfaff JM, Xiang X, Doranz BJ, de Silva AM, Austin SK, Sukupolvi-Petty S, Diamond MS, Crowe JE
(2013) mBio 4: e00873-13 - Determinants of VH1-46 Cross-Reactivity to Pemphigus Vulgaris Autoantigen Desmoglein 3 and Rotavirus Antigen VP6.
Cho MJ, Ellebrecht CT, Hammers CM, Mukherjee EM, Sapparapu G, Boudreaux CE, McDonald SM, Crowe JE, Payne AS
(2016) J Immunol 197: 1065-73 - Alport alloantibodies but not Goodpasture autoantibodies induce murine glomerulonephritis: protection by quinary crosslinks locking cryptic α3(IV) collagen autoepitopes in vivo.
Luo W, Wang XP, Kashtan CE, Borza DB
(2010) J Immunol 185: 3520-8 - Extensive CD4 and CD8 T Cell Cross-Reactivity between Alphaherpesviruses.
Jing L, Laing KJ, Dong L, Russell RM, Barlow RS, Haas JG, Ramchandani MS, Johnston C, Buus S, Redwood AJ, White KD, Mallal SA, Phillips EJ, Posavad CM, Wald A, Koelle DM
(2016) J Immunol 196: 2205-2218 - Maximal serum stimulation of the c-fos serum response element requires both the serum response factor and a novel binding factor, SRE-binding protein.
Boulden AM, Sealy LJ
(1992) Mol Cell Biol 12: 4769-83 - Antibiotic Allergy in Pediatrics.
Norton AE, Konvinse K, Phillips EJ, Broyles AD
(2018) Pediatrics 141: - Isolation of dengue virus-specific memory B cells with live virus antigen from human subjects following natural infection reveals the presence of diverse novel functional groups of antibody clones.
Smith SA, de Alwis AR, Kose N, Jadi RS, de Silva AM, Crowe JE
(2014) J Virol 88: 12233-41 - A broadly neutralizing human monoclonal antibody that recognizes a conserved, novel epitope on the globular head of the influenza H1N1 virus hemagglutinin.
Krause JC, Tsibane T, Tumpey TM, Huffman CJ, Basler CF, Crowe JE
(2011) J Virol 85: 10905-8 - Functional Transplant of a Dengue Virus Serotype 3 (DENV3)-Specific Human Monoclonal Antibody Epitope into DENV1.
Messer WB, Yount BL, Royal SR, de Alwis R, Widman DG, Smith SA, Crowe JE, Pfaff JM, Kahle KM, Doranz BJ, Ibarra KD, Harris E, de Silva AM, Baric RS
(2016) J Virol 90: 5090-5097 - Persistence of circulating memory B cell clones with potential for dengue virus disease enhancement for decades following infection.
Smith SA, Zhou Y, Olivarez NP, Broadwater AH, de Silva AM, Crowe JE
(2012) J Virol 86: 2665-75 - Prior Dengue Virus Exposure Shapes T Cell Immunity to Zika Virus in Humans.
Grifoni A, Pham J, Sidney J, O'Rourke PH, Paul S, Peters B, Martini SR, de Silva AD, Ricciardi MJ, Magnani DM, Silveira CGT, Maestri A, Costa PR, de-Oliveira-Pinto LM, de Azeredo EL, Damasco PV, Phillips E, Mallal S, de Silva AM, Collins M, Durbin A, Diehl SA, Cerpas C, Balmaseda A, Kuan G, Coloma J, Harris E, Crowe JE, Stone M, Norris PJ, Busch M, Vivanco-Cid H, Cox J, Graham BS, Ledgerwood JE, Turtle L, Solomon T, Kallas EG, Watkins DI, Weiskopf D, Sette A
(2017) J Virol 91: - Antimicrobial stewardship's new weapon? A review of antibiotic allergy and pathways to 'de-labeling'.
Trubiano J, Phillips E
(2013) Curr Opin Infect Dis 26: 526-37 - Old dog begging for new tricks: current practices and future directions in the diagnosis of delayed antimicrobial hypersensitivity.
Konvinse KC, Phillips EJ, White KD, Trubiano JA
(2016) Curr Opin Infect Dis 29: 561-576 - Stimulation of stromal cell growth by normal rat urothelial cell-derived epidermal growth factor.
Noguchi S, Yura Y, Sherwood ER, Kakinuma H, Kashihara N, Oyasu R
(1990) Lab Invest 62: 538-44 - Abacavir-reactive memory T cells are present in drug naïve individuals.
Lucas A, Lucas M, Strhyn A, Keane NM, McKinnon E, Pavlos R, Moran EM, Meyer-Pannwitt V, Gaudieri S, D'Orsogna L, Kalams S, Ostrov DA, Buus S, Peters B, Mallal S, Phillips E
(2015) PLoS One 10: e0117160 - Exploring the link between pholcodine exposure and neuromuscular blocking agent anaphylaxis.
Brusch AM, Clarke RC, Platt PR, Phillips EJ
(2014) Br J Clin Pharmacol 78: 14-23 - Measurement of a folate binding protein from rat liver cytosol by radioimmunoassay.
Cook RJ, Wagner C
(1981) Arch Biochem Biophys 208: 358-64 - Effect of polyclonal and monoclonal HLA-DR xenoantibodies on xenogeneic mixed lymphocyte reactions.
Russo C, Quaranta V, Indiveri F, Pellegrino MA, Ferrone S
(1980) Immunogenetics 11: 413-6 - Cross-reactivity between human and murine lymphocyte antigens. IV. Reactivity of H-2 alloantisera with HLA-A, B antigens.
Quaranta V, Pellegrino MA, Callahan GN, Ferrone S
(1981) Immunogenetics 13: 311-7 - Assessment of interference by heparin cofactor II in the DuPont aca antithrombin-III assay.
Hortin GL, Tollefsen DM, Santoro SA
(1988) Am J Clin Pathol 89: 515-7 - Isolation and characterization of a platelet surface collagen binding complex related to VLA-2.
Santoro SA, Rajpara SM, Staatz WD, Woods VL
(1988) Biochem Biophys Res Commun 153: 217-23
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