Emily Hodges
Faculty Member
Last active: 4/26/2017

  1. Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates. Molaro A, Hodges E, Fang F, Song Q, McCombie WR, Hannon GJ, Smith AD (2011) Cell 146(6): 1029-41
    › Primary publication · 21925323 (PubMed) · PMC3205962 (PubMed Central)
  2. Mutations in the RNA granule component TDRD7 cause cataract and glaucoma. Lachke SA, Alkuraya FS, Kneeland SC, Ohn T, Aboukhalil A, Howell GR, Saadi I, Cavallesco R, Yue Y, Tsai AC, Nair KS, Cosma MI, Smith RS, Hodges E, Alfadhli SM, Al-Hajeri A, Shamseldin HE, Behbehani A, Hannon GJ, Bulyk ML, Drack AV, Anderson PJ, John SW, Maas RL (2011) Science 331(6024): 1571-6
    › Primary publication · 21436445 (PubMed) · PMC3279122 (PubMed Central)
  3. Exome sequencing and disease-network analysis of a single family implicate a mutation in KIF1A in hereditary spastic paraparesis. Erlich Y, Edvardson S, Hodges E, Zenvirt S, Thekkat P, Shaag A, Dor T, Hannon GJ, Elpeleg O (2011) Genome Res 21(5): 658-64
    › Primary publication · 21487076 (PubMed) · PMC3083082 (PubMed Central)
  4. Directional DNA methylation changes and complex intermediate states accompany lineage specificity in the adult hematopoietic compartment. Hodges E, Molaro A, Dos Santos CO, Thekkat P, Song Q, Uren PJ, Park J, Butler J, Rafii S, McCombie WR, Smith AD, Hannon GJ (2011) Mol Cell 44(1): 17-28
    › Primary publication · 21924933 (PubMed) · PMC3412369 (PubMed Central)
  5. Targeted investigation of the Neandertal genome by array-based sequence capture. Burbano HA, Hodges E, Green RE, Briggs AW, Krause J, Meyer M, Good JM, Maricic T, Johnson PL, Xuan Z, Rooks M, Bhattacharjee A, Brizuela L, Albert FW, de la Rasilla M, Fortea J, Rosas A, Lachmann M, Hannon GJ, Pääbo S (2010) Science 328(5979): 723-5
    › Primary publication · 20448179 (PubMed) · PMC3140021 (PubMed Central)
  6. Targeted enrichment of specific regions in the human genome by array hybridization. Igartua C, Turner EH, Ng SB, Hodges E, Hannon GJ, Bhattacharjee A, Rieder MJ, Nickerson DA, Shendure J (2010) Curr Protoc Hum Genet : Unit 18.3
    › Primary publication · 20582915 (PubMed) · PMC2910258 (PubMed Central)
  7. Evolutionary flux of canonical microRNAs and mirtrons in Drosophila. Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC (2010) Nat Genet 42(1): 6-9; author reply 9-10
    › Primary publication · 20037610 (PubMed) · PMC4136759 (PubMed Central)
  8. Deep sequencing of target linkage assay-identified regions in familial breast cancer: methods, analysis pipeline and troubleshooting. Rosa-Rosa JM, Gracia-Aznárez FJ, Hodges E, Pita G, Rooks M, Xuan Z, Bhattacharjee A, Brizuela L, Silva JM, Hannon GJ, Benitez J (2010) PLoS One 5(4): e9976
    › Primary publication · 20368986 (PubMed) · PMC2848842 (PubMed Central)
  9. Hybrid selection of discrete genomic intervals on custom-designed microarrays for massively parallel sequencing. Hodges E, Rooks M, Xuan Z, Bhattacharjee A, Benjamin Gordon D, Brizuela L, Richard McCombie W, Hannon GJ (2009) Nat Protoc 4(6): 960-74
    › Primary publication · 19478811 (PubMed) · PMC2990409 (PubMed Central)
  10. High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing. Hodges E, Smith AD, Kendall J, Xuan Z, Ravi K, Rooks M, Zhang MQ, Ye K, Bhattacharjee A, Brizuela L, McCombie WR, Wigler M, Hannon GJ, Hicks JB (2009) Genome Res 19(9): 1593-605
    › Primary publication · 19581485 (PubMed) · PMC2752124 (PubMed Central)