Emily Hodges
Faculty Member
Last active: 4/26/2017

  1. The evolutionary and phylogeographic history of woolly mammoths: a comprehensive mitogenomic analysis. Chang D, Knapp M, Enk J, Lippold S, Kircher M, Lister A, MacPhee RD, Widga C, Czechowski P, Sommer R, Hodges E, Stümpel N, Barnes I, Dalén L, Derevianko A, Germonpré M, Hillebrand-Voiculescu A, Constantin S, Kuznetsova T, Mol D, Rathgeber T, Rosendahl W, Tikhonov AN, Willerslev E, Hannon G, Lalueza-Fox C, Joger U, Poinar H, Hofreiter M, Shapiro B (2017) Sci Rep : 44585
    › Primary publication · 28327635 (PubMed) · PMC5361112 (PubMed Central)
  2. Mutational landscape of EGFR-, MYC-, and Kras-driven genetically engineered mouse models of lung adenocarcinoma. McFadden DG, Politi K, Bhutkar A, Chen FK, Song X, Pirun M, Santiago PM, Kim-Kiselak C, Platt JT, Lee E, Hodges E, Rosebrock AP, Bronson RT, Socci ND, Hannon GJ, Jacks T, Varmus H (2016) Proc Natl Acad Sci U S A 113(42): E6409-E6417
    › Primary publication · 27702896 (PubMed) · PMC5081629 (PubMed Central)
  3. An epigenetic memory of pregnancy in the mouse mammary gland. Dos Santos CO, Dolzhenko E, Hodges E, Smith AD, Hannon GJ (2015) Cell Rep 11(7): 1102-9
    › Primary publication · 25959817 (PubMed) · PMC4439279 (PubMed Central)
  4. Two waves of de novo methylation during mouse germ cell development. Molaro A, Falciatori I, Hodges E, Aravin AA, Marran K, Rafii S, McCombie WR, Smith AD, Hannon GJ (2014) Genes Dev 28(14): 1544-9
    › Primary publication · 25030694 (PubMed) · PMC4102761 (PubMed Central)
  5. Two ancient human genomes reveal Polynesian ancestry among the indigenous Botocudos of Brazil. Malaspinas AS, Lao O, Schroeder H, Rasmussen M, Raghavan M, Moltke I, Campos PF, Sagredo FS, Rasmussen S, Gonçalves VF, Albrechtsen A, Allentoft ME, Johnson PL, Li M, Reis S, Bernardo DV, DeGiorgio M, Duggan AT, Bastos M, Wang Y, Stenderup J, Moreno-Mayar JV, Brunak S, Sicheritz-Ponten T, Hodges E, Hannon GJ, Orlando L, Price TD, Jensen JD, Nielsen R, Heinemeier J, Olsen J, Rodrigues-Carvalho C, Lahr MM, Neves WA, Kayser M, Higham T, Stoneking M, Pena SD, Willerslev E (2014) Curr Biol 24(21): R1035-7
    › Primary publication · 25455029 (PubMed) · PMC4370112 (PubMed Central)
  6. Variations in COL15A1 and COL18A1 influence age of onset of primary open angle glaucoma. Wiggs JL, Howell GR, Linkroum K, Abdrabou W, Hodges E, Braine CE, Pasquale LR, Hannon GJ, Haines JL, John SW (2013) Clin Genet 84(2): 167-74
    › Primary publication · 23621901 (PubMed) · PMC3771394 (PubMed Central)
  7. De novo DNA demethylation and noncoding transcription define active intergenic regulatory elements. Schlesinger F, Smith AD, Gingeras TR, Hannon GJ, Hodges E (2013) Genome Res 23(10): 1601-14
    › Primary publication · 23811145 (PubMed) · PMC3787258 (PubMed Central)
  8. Site identification in high-throughput RNA-protein interaction data. Uren PJ, Bahrami-Samani E, Burns SC, Qiao M, Karginov FV, Hodges E, Hannon GJ, Sanford JR, Penalva LO, Smith AD (2012) Bioinformatics 28(23): 3013-20
    › Primary publication · 23024010 (PubMed) · PMC3509493 (PubMed Central)
  9. Genomic landscape of human allele-specific DNA methylation. Fang F, Hodges E, Molaro A, Dean M, Hannon GJ, Smith AD (2012) Proc Natl Acad Sci U S A 109(19): 7332-7
    › Primary publication · 22523239 (PubMed) · PMC3358917 (PubMed Central)
  10. Targeted resequencing of a genomic region influencing tameness and aggression reveals multiple signals of positive selection. Albert FW, Hodges E, Jensen JD, Besnier F, Xuan Z, Rooks M, Bhattacharjee A, Brizuela L, Good JM, Green RE, Burbano HA, Plyusnina IZ, Trut L, Andersson L, Schöneberg T, Carlborg O, Hannon GJ, Pääbo S (2011) Heredity (Edinb) 107(3): 205-14
    › Primary publication · 21304545 (PubMed) · PMC3183948 (PubMed Central)