David Tabb
Faculty Member
Last active: 6/26/2014

  1. Evaluating protein interactions through cross-linking mass spectrometry. Tabb DL (2012) Nat Methods 9(9): 879-81
    › Primary publication · 22936167 (PubMed) · PMC3730130 (PubMed Central)
  2. A cross-platform toolkit for mass spectrometry and proteomics. Chambers MC, Maclean B, Burke R, Amodei D, Ruderman DL, Neumann S, Gatto L, Fischer B, Pratt B, Egertson J, Hoff K, Kessner D, Tasman N, Shulman N, Frewen B, Baker TA, Brusniak MY, Paulse C, Creasy D, Flashner L, Kani K, Moulding C, Seymour SL, Nuwaysir LM, Lefebvre B, Kuhlmann F, Roark J, Rainer P, Detlev S, Hemenway T, Huhmer A, Langridge J, Connolly B, Chadick T, Holly K, Eckels J, Deutsch EW, Moritz RL, Katz JE, Agus DB, MacCoss M, Tabb DL, Mallick P (2012) Nat Biotechnol 30(10): 918-20
    › Primary publication · 23051804 (PubMed) · PMC3471674 (PubMed Central)
  3. Supporting tool suite for production proteomics. Ma ZQ, Tabb DL, Burden J, Chambers MC, Cox MB, Cantrell MJ, Ham AJ, Litton MD, Oreto MR, Schultz WC, Sobecki SM, Tsui TY, Wernke GR, Liebler DC (2011) Bioinformatics 27(22): 3214-5
    › Primary publication · 21965817 (PubMed) · PMC3208394 (PubMed Central)
  4. Sequence tagging reveals unexpected modifications in toxicoproteomics. Dasari S, Chambers MC, Codreanu SG, Liebler DC, Collins BC, Pennington SR, Gallagher WM, Tabb DL (2011) Chem Res Toxicol 24(2): 204-16
    › Primary publication · 21214251 (PubMed) · PMC3042045 (PubMed Central)
  5. ScanRanker: Quality assessment of tandem mass spectra via sequence tagging. Ma ZQ, Chambers MC, Ham AJ, Cheek KL, Whitwell CW, Aerni HR, Schilling B, Miller AW, Caprioli RM, Tabb DL (2011) J Proteome Res 10(7): 2896-904
    › Primary publication · 21520941 (PubMed) · PMC3128668 (PubMed Central)
  6. Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam Principles). Kinsinger CR, Apffel J, Baker M, Bian X, Borchers CH, Bradshaw R, Brusniak MY, Chan DW, Deutsch EW, Domon B, Gorman J, Grimm R, Hancock W, Hermjakob H, Horn D, Hunter C, Kolar P, Kraus HJ, Langen H, Linding R, Moritz RL, Omenn GS, Orlando R, Pandey A, Ping P, Rahbar A, Rivers R, Seymour SL, Simpson RJ, Slotta D, Smith RD, Stein SE, Tabb DL, Tagle D, Yates JR, Rodriguez H (2011) Mol Cell Proteomics 10(12): O111.015446
    › Primary publication · 22052993 (PubMed) · PMC3237091 (PubMed Central)
  7. Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles). Kinsinger CR, Apffel J, Baker M, Bian X, Borchers CH, Bradshaw R, Brusniak MY, Chan DW, Deutsch EW, Domon B, Gorman J, Grimm R, Hancock W, Hermjakob H, Horn D, Hunter C, Kolar P, Kraus HJ, Langen H, Linding R, Moritz RL, Omenn GS, Orlando R, Pandey A, Ping P, Rahbar A, Rivers R, Seymour SL, Simpson RJ, Slotta D, Smith RD, Stein SE, Tabb DL, Tagle D, Yates JR, Rodriguez H (2011) Proteomics Clin Appl 5(11-12): 580-9
    › Primary publication · 22213554 (PubMed)
  8. Proteomic analysis of the enterocyte brush border. McConnell RE, Benesh AE, Mao S, Tabb DL, Tyska MJ (2011) Am J Physiol Gastrointest Liver Physiol 300(5): G914-26
    › Primary publication · 21330445 (PubMed) · PMC3094140 (PubMed Central)
  9. A face in the crowd: recognizing peptides through database search. Eng JK, Searle BC, Clauser KR, Tabb DL (2011) Mol Cell Proteomics 10(11): R111.009522
    › Primary publication · 21876205 (PubMed) · PMC3226415 (PubMed Central)
  10. A bioinformatics workflow for variant peptide detection in shotgun proteomics. Li J, Su Z, Ma ZQ, Slebos RJ, Halvey P, Tabb DL, Liebler DC, Pao W, Zhang B (2011) Mol Cell Proteomics 10(5): M110.006536
    › Primary publication · 21389108 (PubMed) · PMC3098595 (PubMed Central)