David Tabb
Faculty Member
Last active: 6/26/2014

  1. Refining comparative proteomics by spectral counting to account for shared peptides and multiple search engines. Chen YY, Dasari S, Ma ZQ, Vega-Montoto LJ, Li M, Tabb DL (2012) Anal Bioanal Chem 404(4): 1115-25
    › Primary publication · 22552787 (PubMed) · PMC3717168 (PubMed Central)
  2. Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam Principles). Kinsinger CR, Apffel J, Baker M, Bian X, Borchers CH, Bradshaw R, Brusniak MY, Chan DW, Deutsch EW, Domon B, Gorman J, Grimm R, Hancock W, Hermjakob H, Horn D, Hunter C, Kolar P, Kraus HJ, Langen H, Linding R, Moritz RL, Omenn GS, Orlando R, Pandey A, Ping P, Rahbar A, Rivers R, Seymour SL, Simpson RJ, Slotta D, Smith RD, Stein SE, Tabb DL, Tagle D, Yates JR, Rodriguez H (2012) J Proteome Res 11(2): 1412-9
    › Primary publication · 22053864 (PubMed) · PMC3272102 (PubMed Central)
  3. Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles). Kinsinger CR, Apffel J, Baker M, Bian X, Borchers CH, Bradshaw R, Brusniak MY, Chan DW, Deutsch EW, Domon B, Gorman J, Grimm R, Hancock W, Hermjakob H, Horn D, Hunter C, Kolar P, Kraus HJ, Langen H, Linding R, Moritz RL, Omenn GS, Orlando R, Pandey A, Ping P, Rahbar A, Rivers R, Seymour SL, Simpson RJ, Slotta D, Smith RD, Stein SE, Tabb DL, Tagle D, Yates JR, Rodriguez H (2012) Proteomics 12(1): 11-20
    › Primary publication · 22069307 (PubMed)
  4. QuaMeter: multivendor performance metrics for LC-MS/MS proteomics instrumentation. Ma ZQ, Polzin KO, Dasari S, Chambers MC, Schilling B, Gibson BW, Tran BQ, Vega-Montoto L, Liebler DC, Tabb DL (2012) Anal Chem 84(14): 5845-50
    › Primary publication · 22697456 (PubMed) · PMC3730131 (PubMed Central)
  5. Proteomic analysis of Chinese hamster ovary cells. Baycin-Hizal D, Tabb DL, Chaerkady R, Chen L, Lewis NE, Nagarajan H, Sarkaria V, Kumar A, Wolozny D, Colao J, Jacobson E, Tian Y, O'Meally RN, Krag SS, Cole RN, Palsson BO, Zhang H, Betenbaugh M (2012) J Proteome Res 11(11): 5265-76
    › Primary publication · 22971049 (PubMed) · PMC3772721 (PubMed Central)
  6. Protein identification using customized protein sequence databases derived from RNA-Seq data. Wang X, Slebos RJ, Wang D, Halvey PJ, Tabb DL, Liebler DC, Zhang B (2012) J Proteome Res 11(2): 1009-17
    › Primary publication · 22103967 (PubMed) · PMC3727138 (PubMed Central)
  7. Pepitome: evaluating improved spectral library search for identification complementarity and quality assessment. Dasari S, Chambers MC, Martinez MA, Carpenter KL, Ham AJ, Vega-Montoto LJ, Tabb DL (2012) J Proteome Res 11(3): 1686-95
    › Primary publication · 22217208 (PubMed) · PMC3292681 (PubMed Central)
  8. Obesity and altered glucose metabolism impact HDL composition in CETP transgenic mice: a role for ovarian hormones. Martinez MN, Emfinger CH, Overton M, Hill S, Ramaswamy TS, Cappel DA, Wu K, Fazio S, McDonald WH, Hachey DL, Tabb DL, Stafford JM (2012) J Lipid Res 53(3): 379-89
    › Primary publication · 22215797 (PubMed) · PMC3276461 (PubMed Central)
  9. Mapping serum albumin adducts of the food-borne carcinogen 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine by data-dependent tandem mass spectrometry. Peng L, Dasari S, Tabb DL, Turesky RJ (2012) Chem Res Toxicol 25(10): 2179-93
    › Primary publication · 22827630 (PubMed) · PMC3544159 (PubMed Central)
  10. Identifying proteomic LC-MS/MS data sets with Bumbershoot and IDPicker. Holman JD, Ma ZQ, Tabb DL (2012) Curr Protoc Bioinformatics : Unit13.17
    › Primary publication · 22389012 (PubMed) · PMC4547833 (PubMed Central)