David Samuels Ph.D. - Publications

  1. The Role of Mitochondrial DNA Variation in Age-Related Decline in Gait Speed Among Older Men Living With Human Immunodeficiency Virus. Sun J, Brown TT, Samuels DC, Hulgan T, D'Souza G, Jamieson BD, Erlandson KM, Martinson J, Palella FJ, Margolick JB, Kirk GD, Schrack JA (2018) Clin Infect Dis 67(5): 778-784
    › Primary publication · 29481608 (PubMed) · PMC6093993 (PubMed Central)
  2. Tri-allelic heteroplasmies, DNA-RNA differences and their polynucleotide tract associations in the mitochondrial genome. Zhao S, Samuels DC, Zhao YY, Guo Y (2017) Genomics
    › Primary publication · 28970049 (PubMed)
  3. The discrepancy among single nucleotide variants detected by DNA and RNA high throughput sequencing data. Guo Y, Zhao S, Sheng Q, Samuels DC, Shyr Y (2017) BMC Genomics 18(Suppl 6): 690
    › Primary publication · 28984205 (PubMed) · PMC5629567 (PubMed Central)
  4. StrandScript: evaluation of Illumina genotyping array design and strand correction. Wang J, Samuels DC, Shyr Y, Guo Y (2017) Bioinformatics 33(15): 2399-2401
    › Primary publication · 28402386 (PubMed)
  5. OSBPL10, RXRA and lipid metabolism confer African-ancestry protection against dengue haemorrhagic fever in admixed Cubans. Sierra B, Triska P, Soares P, Garcia G, Perez AB, Aguirre E, Oliveira M, Cavadas B, Regnault B, Alvarez M, Ruiz D, Samuels DC, Sakuntabhai A, Pereira L, Guzman MG (2017) PLoS Pathog 13(2): e1006220
    › Primary publication · 28241052 (PubMed) · PMC5344536 (PubMed Central)
  6. Mitochondrial Haplogroups Modify the Effect of Diabetes Duration and HbA1c on Proliferative Diabetic Retinopathy Risk in Patients With Type 2 Diabetes. Mitchell SL, Neininger AC, Bruce CN, Chocron IM, Bregman JA, Estopinal CB, Muhammad A, Umfress AC, Jarrell KL, Warden C, Harlow PA, Wellons M, Samuels DC, Brantley MA (2017) Invest Ophthalmol Vis Sci 58(14): 6481-6488
    › Primary publication · 29288266 (PubMed) · PMC5749245 (PubMed Central)
  7. Mitochondrial Haplogroups Affect Severity But Not Prevalence of Diabetic Retinopathy. Bregman JA, Herren DJ, Estopinal CB, Chocron IM, Harlow PA, Warden C, Brantley MA, Samuels DC (2017) Invest Ophthalmol Vis Sci 58(2): 1346-1351
    › Primary publication · 28245487 (PubMed) · PMC5341621 (PubMed Central)
  8. Improvements and impacts of GRCh38 human reference on high throughput sequencing data analysis. Guo Y, Dai Y, Yu H, Zhao S, Samuels DC, Shyr Y (2017) Genomics 109(2): 83-90
    › Primary publication · 28131802 (PubMed)
  9. Genome-wide association study of HIV-associated neurocognitive disorder (HAND): A CHARTER group study. Jia P, Zhao Z, Hulgan T, Bush WS, Samuels DC, Bloss CS, Heaton RK, Ellis RJ, Schork N, Marra CM, Collier AC, Clifford DB, Gelman BB, Sacktor N, Morgello S, Simpson DM, McCutchan JA, Barnholtz-Sloan JS, Franklin DR, Rosario D, Letendre SL, Grant I, Kallianpur AR, CHARTER Study Group (2017) Am J Med Genet B Neuropsychiatr Genet 174(4): 413-426
    › Primary publication · 28447399 (PubMed) · PMC5435520 (PubMed Central)
  10. Estimating relative mitochondrial DNA copy number using high throughput sequencing data. Zhang P, Lehmann BD, Samuels DC, Zhao S, Zhao YY, Shyr Y, Guo Y (2017) Genomics 109(5-6): 457-462
    › Primary publication · 28734953 (PubMed)