1. Unsupervised machine learning reveals key immune cell subsets in COVID-19, rhinovirus infection, and cancer therapy. Barone SM, Paul AG, Muehling LM, Lannigan JA, Kwok WW, Turner RB, Woodfolk JA, Irish JM (2021) Elife
    › Primary publication · 34350827 (PubMed) · PMC8370768 (PubMed Central)
  2. Targeting In Vivo Metabolic Vulnerabilities of Th2 and Th17 Cells Reduces Airway Inflammation. Healey DCC, Cephus JY, Barone SM, Chowdhury NU, Dahunsi DO, Madden MZ, Ye X, Yu X, Olszewski K, Young K, Gerriets VA, Siska PJ, Dworski R, Hemler J, Locasale JW, Poyurovsky MV, Peebles RS, Irish JM, Newcomb DC, Rathmell JC (2021) J Immunol 206(6): 1127-1139
    › Primary publication · 33558372 (PubMed) · PMC7946768 (PubMed Central)
  3. Single-cell analysis by mass cytometry reveals metabolic states of early-activated CD8 T cells during the primary immune response. Levine LS, Hiam-Galvez KJ, Marquez DM, Tenvooren I, Madden MZ, Contreras DC, Dahunsi DO, Irish JM, Oluwole OO, Rathmell JC, Spitzer MH (2021) Immunity 54(4): 829-844.e5
    › Primary publication · 33705706 (PubMed) · PMC8046726 (PubMed Central)
  4. Selective Inhibition of JAK1 Primes STAT5-Driven Human Leukemia Cells for ATRA-Induced Differentiation. Ramsey HE, Stengel K, Pino JC, Johnston G, Childress M, Gorska AE, Arrate PM, Fuller L, Villaume M, Fischer MA, Ferrell PB, Roe CE, Zou J, Lubbock ALR, Stubbs M, Zinkel S, Irish JM, Lopez CF, Hiebert S, Savona MR (2021) Target Oncol
    › Primary publication · 34324169 (PubMed)
  5. HLA-DR cancer cells expression correlates with T cell infiltration and is enriched in lung adenocarcinoma with indolent behavior. Senosain MF, Zou Y, Novitskaya T, Vasiukov G, Balar AB, Rowe DJ, Doxie DB, Lehman JM, Eisenberg R, Maldonado F, Zijlstra A, Novitskiy SV, Irish JM, Massion PP (2021) Sci Rep 11(1): 14424
    › Primary publication · 34257356 (PubMed) · PMC8277797 (PubMed Central)
  6. DebarcodeR increases fluorescent cell barcoding capacity and accuracy. Reisman BJ, Barone SM, Bachmann BO, Irish JM (2021) Cytometry A 99(9): 946-953
    › Primary publication · 33960644 (PubMed) · PMC8410645 (PubMed Central)
  7. CMV exposure drives long-term CD57+ CD4 memory T cell inflation following allogeneic stem cell transplant. Yeh AC, Varelias A, Reddy A, Barone SM, Olver S, Chilson K, Onstad L, Ensbey KS, Henden AS, Samson L, Jaeger CA, Bi T, Dahlman K, Kim TK, Zhang P, Degli-Esposti MA, Newell EW, Jagasia M, Irish JM, Lee SJ, Hill GR (2021) Blood
    › Primary publication · 34115118 (PubMed)
  8. A Cytometrist's Guide to Coordinating and Performing Effective COVID-19 Research. Chattopadhyay PK, Filby A, Jellison ER, Ferrari G, Green C, Cherian S, Irish J, Litwin V, other members of the ISAC COVID-19 Work Group (2021) Cytometry A 99(1): 11-18
    › Primary publication · 32881296 (PubMed) · PMC7461086 (PubMed Central)
  9. Unsupervised machine learning reveals risk stratifying glioblastoma tumor cells. Leelatian N, Sinnaeve J, Mistry AM, Barone SM, Brockman AA, Diggins KE, Greenplate AR, Weaver KD, Thompson RC, Chambless LB, Mobley BC, Ihrie RA, Irish JM (2020) Elife
    › Primary publication · 32573435 (PubMed) · PMC7340505 (PubMed Central)
  10. Unsupervised machine learning reveals key immune cell subsets in COVID-19, rhinovirus infection, and cancer therapy. Barone SM, Paul AGA, Muehling LM, Lannigan JA, Kwok WW, Turner RB, Woodfolk JA, Irish JM (2020) bioRxiv
    › Primary publication · 32766581 (PubMed) · PMC7402038 (PubMed Central)