Thomas Houfek
Last active: 2/23/2012


Thomas Houfek joined the BCBC in January 2008. Presently he is assisting Jean-Phillipe Cartailler in managing the development and maintenance of the BCBC website. Thomas comes from North Carolina State University, where for eight years he led software development supporting high-throughput DNA sequencing projects at the Center for Integrated Fungal Research and at the Plant Nematode Genetics Group, in the College of Agriculture and Life Sciences.


The following timeline graph is generated from all co-authored publications.

Most recent publication(s) are shown below:

  1. Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism. Opperman CH, Bird DM, Williamson VM, Rokhsar DS, Burke M, Cohn J, Cromer J, Diener S, Gajan J, Graham S, Houfek TD, Liu Q, Mitros T, Schaff J, Schaffer R, Scholl E, Sosinski BR, Thomas VP, Windham E (2008) Proc Natl Acad Sci U S A 105(39): 14802-7
    › Primary publication · 18809916 (PubMed) · PMC2547418 (PubMed Central)
  2. Alkahest NuclearBLAST : a user-friendly BLAST management and analysis system. Diener SE, Houfek TD, Kalat SE, Windham DE, Burke M, Opperman C, Dean RA (2005) BMC Bioinformatics : 147
    › Primary publication · 15958161 (PubMed) · PMC1181624 (PubMed Central)
  3. Characterization of the protein processing and secretion pathways in a comprehensive set of expressed sequence tags from Trichoderma reesei. Diener SE, Dunn-Coleman N, Foreman P, Houfek TD, Teunissen PJ, van Solingen P, Dankmeyer L, Mitchell TK, Ward M, Dean RA (2004) FEMS Microbiol Lett 230(2): 275-82
    › Primary publication · 14757250 (PubMed)
  4. Transcriptional regulation of biomass-degrading enzymes in the filamentous fungus Trichoderma reesei. Foreman PK, Brown D, Dankmeyer L, Dean R, Diener S, Dunn-Coleman NS, Goedegebuur F, Houfek TD, England GJ, Kelley AS, Meerman HJ, Mitchell T, Mitchinson C, Olivares HA, Teunissen PJ, Yao J, Ward M (2003) J Biol Chem 278(34): 31988-97
    › Primary publication · 12788920 (PubMed)
  5. MagnaportheDB: a federated solution for integrating physical and genetic map data with BAC end derived sequences for the rice blast fungus Magnaporthe grisea. Martin SL, Blackmon BP, Rajagopalan R, Houfek TD, Sceeles RG, Denn SO, Mitchell TK, Brown DE, Wing RA, Dean RA (2002) Nucleic Acids Res 30(1): 121-4
    › Primary publication · 11752272 (PubMed) · PMC99159 (PubMed Central)
  6. Global analysis of protein activities using proteome chips. Zhu H, Bilgin M, Bangham R, Hall D, Casamayor A, Bertone P, Lan N, Jansen R, Bidlingmaier S, Houfek T, Mitchell T, Miller P, Dean RA, Gerstein M, Snyder M (2001) Science 293(5537): 2101-5
    › Primary publication · 11474067 (PubMed)