Sarah P Collier, PhD

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Publications

The following timeline graph is generated from all co-authored publications.

1. Replication of Associations with Electrocardio-graphic Traits in African Americans from Clinical and Epidemiologic Studies. Jeff JM, Brown-Gentry K, Goodloe R, Ritchie MD, Denny JC, Kho AN, Armstrong LL, McClellan B, Mayo P, Allen M, Jin H, Gillani NB, Schnetz-Boutaud N, Dilks HH, Basford MA, Pacheco JA, Jarvik GP, Chisholm RL, Roden DM, Hayes MG, Crawford DC (2014) Evol Comput Mach Learn Data Min Bioinform : 939-951
   › Primary publication · 25590050 (PubMed) · PMC4290789 (PubMed Central)
2. Genotype and risk of major bleeding during warfarin treatment. Kawai VK, Cunningham A, Vear SI, Van Driest SL, Oginni A, Xu H, Jiang M, Li C, Denny JC, Shaffer C, Bowton E, Gage BF, Ray WA, Roden DM, Stein CM (2014) Pharmacogenomics 15(16): 1973-83
   › Primary publication · 25521356 (PubMed) · PMC4304738 (PubMed Central)
3. Genetic variation in the UGT1A locus is associated with simvastatin efficacy in a clinical practice setting. Iwuchukwu OF, Feng Q, Wei WQ, Jiang L, Jiang M, Xu H, Denny JC, Wilke RA, Krauss RM, Roden DM, Stein CM (2014) Pharmacogenomics 15(14): 1739-1747
   › Primary publication · 25493567 (PubMed) · PMC4292894 (PubMed Central)
4. Controlling for population structure and genotyping platform bias in the eMERGE multi-institutional biobank linked to electronic health records. Crosslin DR, Tromp G, Burt A, Kim DS, Verma SS, Lucas AM, Bradford Y, Crawford DC, Armasu SM, Heit JA, Hayes MG, Kuivaniemi H, Ritchie MD, Jarvik GP, de Andrade M, electronic Medical Records and Genomics (eMERGE) Network (2014) Front Genet : 352
   › Primary publication · 25414722 (PubMed) · PMC4220165 (PubMed Central)
5. Examining rare and low-frequency genetic variants previously associated with lone or familial forms of atrial fibrillation in an electronic medical record system: a cautionary note. Weeke P, Denny JC, Basterache L, Shaffer C, Bowton E, Ingram C, Darbar D, Roden DM (2015) Circ Cardiovasc Genet 8(1): 58-63
   › Primary publication · 25410959 (PubMed) · PMC4334677 (PubMed Central)
6. Regulation of the Th1 genomic locus from Ifng through Tmevpg1 by T-bet. Collier SP, Henderson MA, Tossberg JT, Aune TM (2014) J Immunol 193(8): 3959-65
   › Primary publication · 25225667 (PubMed) · PMC4185266 (PubMed Central)
7. Phenome-wide association studies demonstrating pleiotropy of genetic variants within FTO with and without adjustment for body mass index. Cronin RM, Field JR, Bradford Y, Shaffer CM, Carroll RJ, Mosley JD, Bastarache L, Edwards TL, Hebbring SJ, Lin S, Hindorff LA, Crane PK, Pendergrass SA, Ritchie MD, Crawford DC, Pathak J, Bielinski SJ, Carrell DS, Crosslin DR, Ledbetter DH, Carey DJ, Tromp G, Williams MS, Larson EB, Jarvik GP, Peissig PL, Brilliant MH, McCarty CA, Chute CG, Kullo IJ, Bottinger E, Chisholm R, Smith ME, Roden DM, Denny JC (2014) Front Genet : 250
   › Primary publication · 25177340 (PubMed) · PMC4134007 (PubMed Central)
8. Mitochondrial haplogroups are associated with severity of diabetic retinopathy. Estopinal CB, Chocron IM, Parks MB, Wade EA, Roberson RM, Burgess LG, Brantley MA, Samuels DC (2014) Invest Ophthalmol Vis Sci 55(9): 5589-95
   › Primary publication · 25118268 (PubMed) · PMC4160073 (PubMed Central)
9. Integrating EMR-linked and in vivo functional genetic data to identify new genotype-phenotype associations. Mosley JD, Van Driest SL, Weeke PE, Delaney JT, Wells QS, Bastarache L, Roden DM, Denny JC (2014) PLoS One 9(6): e100322
   › Primary publication · 24949630 (PubMed) · PMC4065041 (PubMed Central)
10. Accuracy of administratively-assigned ancestry for diverse populations in an electronic medical record-linked biobank. Hall JB, Dumitrescu L, Dilks HH, Crawford DC, Bush WS (2014) PLoS One 9(6): e99161
    › Primary publication · 24896101 (PubMed) · PMC4045967 (PubMed Central)
11. Investigating the relationship between mitochondrial genetic variation and cardiovascular-related traits to develop a framework for mitochondrial phenome-wide association studies. Mitchell SL, Hall JB, Goodloe RJ, Boston J, Farber-Eger E, Pendergrass SA, Bush WS, Crawford DC (2014) BioData Min : 6
    › Primary publication · 24731735 (PubMed) · PMC4021623 (PubMed Central)
12. Pleiotropy of cancer susceptibility variants on the risk of non-Hodgkin lymphoma: the PAGE consortium. Lim U, Kocarnik JM, Bush WS, Matise TC, Caberto C, Park SL, Carlson CS, Deelman E, Duggan D, Fesinmeyer M, Haiman CA, Henderson BE, Hindorff LA, Kolonel LN, Peters U, Stram DO, Tiirikainen M, Wilkens LR, Wu C, Kooperberg C, Le Marchand L (2014) PLoS One 9(3): e89791
    › Primary publication · 24598796 (PubMed) · PMC3943855 (PubMed Central)
13. Development of a data-mining algorithm to identify ages at reproductive milestones in electronic medical records. Malinowski J, Farber-Eger E, Crawford DC (2014) Pac Symp Biocomput : 376-87
    › Primary publication · 24297563 (PubMed) · PMC3905575 (PubMed Central)
14. A common variant on chromosome 4q25 is associated with prolonged PR interval in subjects with and without atrial fibrillation. Kolek MJ, Parvez B, Muhammad R, Shoemaker MB, Blair MA, Stubblefield T, Kucera GA, Denny JC, Roden DM, Darbar D (2014) Am J Cardiol 113(2): 309-13
    › Primary publication · 24161141 (PubMed) · PMC3947341 (PubMed Central)
15. The invasive chytrid fungus of amphibians paralyzes lymphocyte responses. Fites JS, Ramsey JP, Holden WM, Collier SP, Sutherland DM, Reinert LK, Gayek AS, Dermody TS, Aune TM, Oswald-Richter K, Rollins-Smith LA (2013) Science 342(6156): 366-9
    › Primary publication · 24136969 (PubMed) · PMC3956111 (PubMed Central)
16. Variants in BET1L and TNRC6B associate with increasing fibroid volume and fibroid type among European Americans. Edwards TL, Hartmann KE, Velez Edwards DR (2013) Hum Genet 132(12): 1361-9
    › Primary publication · 23892540 (PubMed) · PMC3830582 (PubMed Central)
17. A common functional promoter variant links CNR1 gene expression to HDL cholesterol level. Feng Q, Vickers KC, Anderson MP, Levin MG, Chen W, Harrison DG, Wilke RA (2013) Nat Commun : 1973
    › Primary publication · 23748922 (PubMed) · PMC3873874 (PubMed Central)
18. Epigenetic Activation and Silencing of the Gene that Encodes IFN-γ. Aune TM, Collins PL, Collier SP, Henderson MA, Chang S (2013) Front Immunol : 112
    › Primary publication · 23720660 (PubMed) · PMC3655339 (PubMed Central)
19. Assessment of a pharmacogenomic marker panel in a polypharmacy population identified from electronic medical records. Oetjens MT, Denny JC, Ritchie MD, Gillani NB, Richardson DM, Restrepo NA, Pulley JM, Dilks HH, Basford MA, Bowton E, Masys DR, Wilke RA, Roden DM, Crawford DC (2013) Pharmacogenomics 14(7): 735-44
    › Primary publication · 23651022 (PubMed) · PMC3725600 (PubMed Central)
20. BET1L and TNRC6B associate with uterine fibroid risk among European Americans. Edwards TL, Michels KA, Hartmann KE, Velez Edwards DR (2013) Hum Genet 132(8): 943-53
    › Primary publication · 23604678 (PubMed) · PMC3715562 (PubMed Central)
21. Enabling high-throughput genotype-phenotype associations in the Epidemiologic Architecture for Genes Linked to Environment (EAGLE) project as part of the Population Architecture using Genomics and Epidemiology (PAGE) study. Bush WS, Boston J, Pendergrass SA, Dumitrescu L, Goodloe R, Brown-Gentry K, Wilson S, McClellan B, Torstenson E, Basford MA, Spencer KL, Ritchie MD, Crawford DC (2013) Pac Symp Biocomput : 373-84
    › Primary publication · 23424142 (PubMed) · PMC3579641 (PubMed Central)
22. Characterization of the Metabochip in diverse populations from the International HapMap Project in the Epidemiologic Architecture for Genes Linked to Environment (EAGLE) project. Crawford DC, Goodloe R, Brown-Gentry K, Wilson S, Roberson J, Gillani NB, Ritchie MD, Dilks HH, Bush WS (2013) Pac Symp Biocomput : 188-99
    › Primary publication · 23424124 (PubMed) · PMC3584704 (PubMed Central)
23. ICD-9 tobacco use codes are effective identifiers of smoking status. Wiley LK, Shah A, Xu H, Bush WS (2013) J Am Med Inform Assoc 20(4): 652-8
    › Primary publication · 23396545 (PubMed) · PMC3721171 (PubMed Central)
24. Evaluation of genome-wide association study-identified type 2 diabetes loci in African Americans. Long J, Edwards T, Signorello LB, Cai Q, Zheng W, Shu XO, Blot WJ (2012) Am J Epidemiol 176(11): 995-1001
    › Primary publication · 23144361 (PubMed) · PMC3571243 (PubMed Central)
25. Cutting edge: influence of Tmevpg1, a long intergenic noncoding RNA, on the expression of Ifng by Th1 cells. Collier SP, Collins PL, Williams CL, Boothby MR, Aune TM (2012) J Immunol 189(5): 2084-8
    › Primary publication · 22851706 (PubMed) · PMC3424368 (PubMed Central)
26. A multistage genetic association study identifies breast cancer risk loci at 10q25 and 16q24. Higginbotham KS, Breyer JP, McReynolds KM, Bradley KM, Schuyler PA, Plummer WD, Freudenthal ME, Trentham-Dietz A, Newcomb PA, Parl FF, Sanders ME, Page DL, Egan KM, Dupont WD, Smith JR (2012) Cancer Epidemiol Biomarkers Prev 21(9): 1565-73
    › Primary publication · 22806168 (PubMed) · PMC3707501 (PubMed Central)
27. Predicting warfarin dosage in European-Americans and African-Americans using DNA samples linked to an electronic health record. Ramirez AH, Shi Y, Schildcrout JS, Delaney JT, Xu H, Oetjens MT, Zuvich RL, Basford MA, Bowton E, Jiang M, Speltz P, Zink R, Cowan J, Pulley JM, Ritchie MD, Masys DR, Roden DM, Crawford DC, Denny JC (2012) Pharmacogenomics 13(4): 407-18
    › Primary publication · 22329724 (PubMed) · PMC3361510 (PubMed Central)
28. Predicting clopidogrel response using DNA samples linked to an electronic health record. Delaney JT, Ramirez AH, Bowton E, Pulley JM, Basford MA, Schildcrout JS, Shi Y, Zink R, Oetjens M, Xu H, Cleator JH, Jahangir E, Ritchie MD, Masys DR, Roden DM, Crawford DC, Denny JC (2012) Clin Pharmacol Ther 91(2): 257-63
    › Primary publication · 22190063 (PubMed) · PMC3621954 (PubMed Central)
29. The use of a DNA biobank linked to electronic medical records to characterize pharmacogenomic predictors of tacrolimus dose requirement in kidney transplant recipients. Birdwell KA, Grady B, Choi L, Xu H, Bian A, Denny JC, Jiang M, Vranic G, Basford M, Cowan JD, Richardson DM, Robinson MP, Ikizler TA, Ritchie MD, Stein CM, Haas DW (2012) Pharmacogenet Genomics 22(1): 32-42
    › Primary publication · 22108237 (PubMed) · PMC3237759 (PubMed Central)
30. Two large-scale surveys on community attitudes toward an opt-out biobank. Brothers KB, Morrison DR, Clayton EW (2011) Am J Med Genet A 155A(12): 2982-90
    › Primary publication · 22065592 (PubMed) · PMC3222722 (PubMed Central)
31. Knowledge-driven multi-locus analysis reveals gene-gene interactions influencing HDL cholesterol level in two independent EMR-linked biobanks. Turner SD, Berg RL, Linneman JG, Peissig PL, Crawford DC, Denny JC, Roden DM, McCarty CA, Ritchie MD, Wilke RA (2011) PLoS One 6(5): e19586
    › Primary publication · 21589926 (PubMed) · PMC3092760 (PubMed Central)
32. A common CNR1 (cannabinoid receptor 1) haplotype attenuates the decrease in HDL cholesterol that typically accompanies weight gain. Feng Q, Jiang L, Berg RL, Antonik M, MacKinney E, Gunnell-Santoro J, McCarty CA, Wilke RA (2010) PLoS One 5(12): e15779
    › Primary publication · 21209828 (PubMed) · PMC3013130 (PubMed Central)
33. High-density lipoprotein (HDL) cholesterol: leveraging practice-based biobank cohorts to characterize clinical and genetic predictors of treatment outcome. Wilke RA (2011) Pharmacogenomics J 11(3): 162-73
    › Primary publication · 21151197 (PubMed) · PMC3309611 (PubMed Central)
34. Visual integration of results from a large DNA biobank (BioVU) using synthesis-view. Pendergrass S, Dudek SM, Roden DM, Crawford DC, Ritchie MD (2011) Pac Symp Biocomput : 265-75
    › Primary publication · 21121054 (PubMed) · PMC3065108 (PubMed Central)
35. Identification of genomic predictors of atrioventricular conduction: using electronic medical records as a tool for genome science. Denny JC, Ritchie MD, Crawford DC, Schildcrout JS, Ramirez AH, Pulley JM, Basford MA, Masys DR, Haines JL, Roden DM (2010) Circulation 122(20): 2016-21
    › Primary publication · 21041692 (PubMed) · PMC2991609 (PubMed Central)
36. Assessing the accuracy of observer-reported ancestry in a biorepository linked to electronic medical records. Dumitrescu L, Ritchie MD, Brown-Gentry K, Pulley JM, Basford M, Denny JC, Oksenberg JR, Roden DM, Haines JL, Crawford DC (2010) Genet Med 12(10): 648-50
    › Primary publication · 20733501 (PubMed) · PMC2952033 (PubMed Central)
37. Principles of human subjects protections applied in an opt-out, de-identified biobank. Pulley J, Clayton E, Bernard GR, Roden DM, Masys DR (2010) Clin Transl Sci 3(1): 42-8
    › Primary publication · 20443953 (PubMed) · PMC3075971 (PubMed Central)
38. Robust replication of genotype-phenotype associations across multiple diseases in an electronic medical record. Ritchie MD, Denny JC, Crawford DC, Ramirez AH, Weiner JB, Pulley JM, Basford MA, Brown-Gentry K, Balser JR, Masys DR, Haines JL, Roden DM (2010) Am J Hum Genet 86(4): 560-72
    › Primary publication · 20362271 (PubMed) · PMC2850440 (PubMed Central)
39. PheWAS: demonstrating the feasibility of a phenome-wide scan to discover gene-disease associations. Denny JC, Ritchie MD, Basford MA, Pulley JM, Bastarache L, Brown-Gentry K, Wang D, Masys DR, Roden DM, Crawford DC (2010) Bioinformatics 26(9): 1205-10
    › Primary publication · 20335276 (PubMed) · PMC2859132 (PubMed Central)

Keywords & MeSH Terms

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