Carl Johnson

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Publications

The following timeline graph is generated from all co-authored publications.

1. Ube3a imprinting impairs circadian robustness in Angelman syndrome models. Shi SQ, Bichell TJ, Ihrie RA, Johnson CH (2015) Curr Biol 25(5): 537-45
   › Primary publication · 25660546 (PubMed) · PMC4348236 (PubMed Central)
2. Biochemistry that times the day. Egli M, Johnson CH (2015) Biochemistry 54(2): 104-9
   › Primary publication · 25514019 (PubMed) · PMC4303296 (PubMed Central)
3. Woody Hastings: 65 years of fun. Greenberg EP, Nealson KH, Johnson CH (2014) Proc Natl Acad Sci U S A 111(42): 14964-5
   › Primary publication · 25271327 (PubMed) · PMC4210301 (PubMed Central)
4. Genetic variation in melatonin pathway enzymes in children with autism spectrum disorder and comorbid sleep onset delay. Veatch OJ, Pendergast JS, Allen MJ, Leu RM, Johnson CH, Elsea SH, Malow BA (2015) J Autism Dev Disord 45(1): 100-10
   › Primary publication · 25059483 (PubMed) · PMC4289108 (PubMed Central)
5. An arginine tetrad as mediator of input-dependent and input-independent ATPases in the clock protein KaiC. Pattanayek R, Xu Y, Lamichhane A, Johnson CH, Egli M (2014) Acta Crystallogr D Biol Crystallogr 70(Pt 5): 1375-90
   › Primary publication · 24816106 (PubMed) · PMC4722857 (PubMed Central)
6. A microfluidic-enabled mechanical microcompressor for the immobilization of live single- and multi-cellular specimens. Yan Y, Jiang L, Aufderheide KJ, Wright GA, Terekhov A, Costa L, Qin K, McCleery WT, Fellenstein JJ, Ustione A, Robertson JB, Johnson CH, Piston DW, Hutson MS, Wikswo JP, Hofmeister W, Janetopoulos C (2014) Microsc Microanal 20(1): 141-51
   › Primary publication · 24444078 (PubMed) · PMC4026272 (PubMed Central)
7. Circadian yin-yang regulation and its manipulation to globally reprogram gene expression. Xu Y, Weyman PD, Umetani M, Xiong J, Qin X, Xu Q, Iwasaki H, Johnson CH (2013) Curr Biol 23(23): 2365-74
   › Primary publication · 24210617 (PubMed) · PMC3889637 (PubMed Central)
8. An Evolutionary Fitness Enhancement Conferred by the Circadian System in Cyanobacteria. Ma P, Woelfle MA, Johnson CH (2013) Chaos Solitons Fractals : 65-74
   › Primary publication · 23626410 (PubMed) · PMC3633149 (PubMed Central)
9. A circadian clock nanomachine that runs without transcription or translation. Egli M, Johnson CH (2013) Curr Opin Neurobiol 23(5): 732-40
   › Primary publication · 23571120 (PubMed) · PMC3735861 (PubMed Central)
10. Circadian disruption leads to insulin resistance and obesity. Shi SQ, Ansari TS, McGuinness OP, Wasserman DH, Johnson CH (2013) Curr Biol 23(5): 372-81
    › Primary publication · 23434278 (PubMed) · PMC3595381 (PubMed Central)
11. Non-optimal codon usage is a mechanism to achieve circadian clock conditionality. Xu Y, Ma P, Shah P, Rokas A, Liu Y, Johnson CH (2013) Nature 495(7439): 116-20
    › Primary publication · 23417065 (PubMed) · PMC3593822 (PubMed Central)
12. Loop-loop interactions regulate KaiA-stimulated KaiC phosphorylation in the cyanobacterial KaiABC circadian clock. Egli M, Pattanayek R, Sheehan JH, Xu Y, Mori T, Smith JA, Johnson CH (2013) Biochemistry 52(7): 1208-20
    › Primary publication · 23351065 (PubMed) · PMC3587310 (PubMed Central)
13. pHlash: a new genetically encoded and ratiometric luminescence sensor of intracellular pH. Zhang Y, Xie Q, Robertson JB, Johnson CH (2012) PLoS One 7(8): e43072
    › Primary publication · 22905204 (PubMed) · PMC3419163 (PubMed Central)
14. Dephosphorylation of the core clock protein KaiC in the cyanobacterial KaiABC circadian oscillator proceeds via an ATP synthase mechanism. Egli M, Mori T, Pattanayek R, Xu Y, Qin X, Johnson CH (2012) Biochemistry 51(8): 1547-58
    › Primary publication · 22304631 (PubMed) · PMC3293397 (PubMed Central)
15. Combined SAXS/EM based models of the S. elongatus post-translational circadian oscillator and its interactions with the output His-kinase SasA. Pattanayek R, Williams DR, Rossi G, Weigand S, Mori T, Johnson CH, Stewart PL, Egli M (2011) PLoS One 6(8): e23697
    › Primary publication · 21887298 (PubMed) · PMC3161067 (PubMed Central)
16. Shift work in nurses: contribution of phenotypes and genotypes to adaptation. Gamble KL, Motsinger-Reif AA, Hida A, Borsetti HM, Servick SV, Ciarleglio CM, Robbins S, Hicks J, Carver K, Hamilton N, Wells N, Summar ML, McMahon DG, Johnson CH (2011) PLoS One 6(4): e18395
    › Primary publication · 21533241 (PubMed) · PMC3076422 (PubMed Central)
17. Luminescence as a continuous real-time reporter of promoter activity in yeast undergoing respiratory oscillations or cell division rhythms. Robertson JB, Johnson CH (2011) Methods Mol Biol : 63-79
    › Primary publication · 21468985 (PubMed) · PMC3433746 (PubMed Central)
18. The cyanobacterial circadian system: from biophysics to bioevolution. Johnson CH, Stewart PL, Egli M (2011) Annu Rev Biophys : 143-67
    › Primary publication · 21332358 (PubMed) · PMC3093959 (PubMed Central)
19. Bioluminescence resonance energy transfer (BRET) imaging in plant seedlings and mammalian cells. Xie Q, Soutto M, Xu X, Zhang Y, Johnson CH (2011) Methods Mol Biol : 3-28
    › Primary publication · 21153370 (PubMed) · PMC3432581 (PubMed Central)
20. Circadian clocks and cell division: what's the pacemaker? Johnson CH (2010) Cell Cycle 9(19): 3864-73
    › Primary publication · 20890114 (PubMed) · PMC3047750 (PubMed Central)
21. Intermolecular associations determine the dynamics of the circadian KaiABC oscillator. Qin X, Byrne M, Mori T, Zou P, Williams DR, McHaourab H, Johnson CH (2010) Proc Natl Acad Sci U S A 107(33): 14805-10
    › Primary publication · 20679240 (PubMed) · PMC2930409 (PubMed Central)
22. Coupling of a core post-translational pacemaker to a slave transcription/translation feedback loop in a circadian system. Qin X, Byrne M, Xu Y, Mori T, Johnson CH (2010) PLoS Biol 8(6): e1000394
    › Primary publication · 20563306 (PubMed) · PMC2885980 (PubMed Central)
23. Circadian clock gene Bmal1 is not essential; functional replacement with its paralog, Bmal2. Shi S, Hida A, McGuinness OP, Wasserman DH, Yamazaki S, Johnson CH (2010) Curr Biol 20(4): 316-21
    › Primary publication · 20153195 (PubMed) · PMC2907674 (PubMed Central)
24. Structures of KaiC circadian clock mutant proteins: a new phosphorylation site at T426 and mechanisms of kinase, ATPase and phosphatase. Pattanayek R, Mori T, Xu Y, Pattanayek S, Johnson CH, Egli M (2009) PLoS One 4(11): e7529
    › Primary publication · 19956664 (PubMed) · PMC2777353 (PubMed Central)
25. Intramolecular regulation of phosphorylation status of the circadian clock protein KaiC. Xu Y, Mori T, Qin X, Yan H, Egli M, Johnson CH (2009) PLoS One 4(11): e7509
    › Primary publication · 19946629 (PubMed) · PMC2778140 (PubMed Central)
26. Comment on "The Arabidopsis circadian clock incorporates a cADPR-based feedback loop". Xu X, Graeff R, Xie Q, Gamble KL, Mori T, Johnson CH (2009) Science 326(5950): 230; author reply 230
    › Primary publication · 19815758 (PubMed) · PMC2934760 (PubMed Central)
27. Light-emitting diode flashlights as effective and inexpensive light sources for fluorescence microscopy. Robertson JB, Zhang Y, Johnson CH (2009) J Microsc 236(1): 1-4
    › Primary publication · 19772530 (PubMed) · PMC2751867 (PubMed Central)
28. Real-time luminescence monitoring of cell-cycle and respiratory oscillations in yeast. Robertson JB, Stowers CC, Boczko E, Johnson CH (2008) Proc Natl Acad Sci U S A 105(46): 17988-93
    › Primary publication · 19004762 (PubMed) · PMC2584751 (PubMed Central)
29. Structural insights into a circadian oscillator. Johnson CH, Egli M, Stewart PL (2008) Science 322(5902): 697-701
    › Primary publication · 18974343 (PubMed) · PMC2588432 (PubMed Central)
30. A cyanobacterial circadian clockwork. Johnson CH, Mori T, Xu Y (2008) Curr Biol 18(17): R816-R825
    › Primary publication · 18786387 (PubMed) · PMC2585598 (PubMed Central)
31. Genetic differences in human circadian clock genes among worldwide populations. Ciarleglio CM, Ryckman KK, Servick SV, Hida A, Robbins S, Wells N, Hicks J, Larson SA, Wiedermann JP, Carver K, Hamilton N, Kidd KK, Kidd JR, Smith JR, Friedlaender J, McMahon DG, Williams SM, Summar ML, Johnson CH (2008) J Biol Rhythms 23(4): 330-40
    › Primary publication · 18663240 (PubMed) · PMC2579796 (PubMed Central)
32. Structural model of the circadian clock KaiB-KaiC complex and mechanism for modulation of KaiC phosphorylation. Pattanayek R, Williams DR, Pattanayek S, Mori T, Johnson CH, Stewart PL, Egli M (2008) EMBO J 27(12): 1767-78
    › Primary publication · 18497745 (PubMed) · PMC2435126 (PubMed Central)
33. Bacterial circadian programs. Johnson CH (2007) Cold Spring Harb Symp Quant Biol : 395-404
    › Primary publication · 18419297 (PubMed)
34. Circadian rhythms of superhelical status of DNA in cyanobacteria. Woelfle MA, Xu Y, Qin X, Johnson CH (2007) Proc Natl Acad Sci U S A 104(47): 18819-24
    › Primary publication · 18000054 (PubMed) · PMC2141860 (PubMed Central)
35. Distinct light and clock modulation of cytosolic free Ca2+ oscillations and rhythmic CHLOROPHYLL A/B BINDING PROTEIN2 promoter activity in Arabidopsis. Xu X, Hotta CT, Dodd AN, Love J, Sharrock R, Lee YW, Xie Q, Johnson CH, Webb AA (2007) Plant Cell 19(11): 3474-90
    › Primary publication · 17982000 (PubMed) · PMC2174886 (PubMed Central)
36. Cycling of CRYPTOCHROME proteins is not necessary for circadian-clock function in mammalian fibroblasts. Fan Y, Hida A, Anderson DA, Izumo M, Johnson CH (2007) Curr Biol 17(13): 1091-100
    › Primary publication · 17583506 (PubMed) · PMC3434691 (PubMed Central)
37. Imaging protein interactions with bioluminescence resonance energy transfer (BRET) in plant and mammalian cells and tissues. Xu X, Soutto M, Xie Q, Servick S, Subramanian C, von Arnim AG, Johnson CH (2007) Proc Natl Acad Sci U S A 104(24): 10264-9
    › Primary publication · 17551013 (PubMed) · PMC1891211 (PubMed Central)
38. Elucidating the ticking of an in vitro circadian clockwork. Mori T, Williams DR, Byrne MO, Qin X, Egli M, Mchaourab HS, Stewart PL, Johnson CH (2007) PLoS Biol 5(4): e93
    › Primary publication · 17388688 (PubMed) · PMC1831719 (PubMed Central)
39. No promoter left behind: global circadian gene expression in cyanobacteria. Woelfle MA, Johnson CH (2006) J Biol Rhythms 21(6): 419-31
    › Primary publication · 17107933 (PubMed) · PMC3431602 (PubMed Central)
40. Quantitative analyses of circadian gene expression in mammalian cell cultures. Izumo M, Sato TR, Straume M, Johnson CH (2006) PLoS Comput Biol 2(10): e136
    › Primary publication · 17040123 (PubMed) · PMC1599765 (PubMed Central)
41. Action Spectrum for Resetting the Circadian Phototaxis Rhythm in the CW15 Strain of Chlamydomonas: II. Illuminated Cells. Johnson CH, Kondo T, Hastings JW (1991) Plant Physiol 97(3): 1122-9
    › Primary publication · 16668498 (PubMed) · PMC1081131 (PubMed Central)
42. Analysis of KaiA-KaiC protein interactions in the cyano-bacterial circadian clock using hybrid structural methods. Pattanayek R, Williams DR, Pattanayek S, Xu Y, Mori T, Johnson CH, Stewart PL, Egli M (2006) EMBO J 25(9): 2017-28
    › Primary publication · 16628225 (PubMed) · PMC1456936 (PubMed Central)
43. Testing the adaptive value of circadian systems. Johnson CH (2005) Methods Enzymol : 818-37
    › Primary publication · 15817326 (PubMed)
44. Identification of key phosphorylation sites in the circadian clock protein KaiC by crystallographic and mutagenetic analyses. Xu Y, Mori T, Pattanayek R, Pattanayek S, Egli M, Johnson CH (2004) Proc Natl Acad Sci U S A 101(38): 13933-8
    › Primary publication · 15347809 (PubMed) · PMC518856 (PubMed Central)
45. The adaptive value of circadian clocks: an experimental assessment in cyanobacteria. Woelfle MA, Ouyang Y, Phanvijhitsiri K, Johnson CH (2004) Curr Biol 14(16): 1481-6
    › Primary publication · 15324665 (PubMed)
46. Visualizing a circadian clock protein: crystal structure of KaiC and functional insights. Pattanayek R, Wang J, Mori T, Xu Y, Johnson CH, Egli M (2004) Mol Cell 15(3): 375-88
    › Primary publication · 15304218 (PubMed)
47. Precise circadian clocks in prokaryotic cyanobacteria. Johnson CH (2004) Curr Issues Mol Biol 6(2): 103-10
    › Primary publication · 15119821 (PubMed)
48. Global orchestration of gene expression by the biological clock of cyanobacteria. Johnson CH (2004) Genome Biol 5(4): 217
    › Primary publication · 15059250 (PubMed) · PMC395776 (PubMed Central)
49. CYANOBACTERIAL CIRCADIAN RHYTHMS. Golden SS, Ishiura M, Johnson CH, Kondo T (1997) Annu Rev Plant Physiol Plant Mol Biol : 327-354
    › Primary publication · 15012266 (PubMed)
50. Circadian gene expression in mammalian fibroblasts revealed by real-time luminescence reporting: temperature compensation and damping. Izumo M, Johnson CH, Yamazaki S (2003) Proc Natl Acad Sci U S A 100(26): 16089-94
    › Primary publication · 14657355 (PubMed) · PMC307697 (PubMed Central)
51. Entrainment of circadian programs. Johnson CH, Elliott JA, Foster R (2003) Chronobiol Int 20(5): 741-74
    › Primary publication · 14535352 (PubMed)
52. Regulation of the PAI-1 promoter by circadian clock components: differential activation by BMAL1 and BMAL2. Schoenhard JA, Smith LH, Painter CA, Eren M, Johnson CH, Vaughan DE (2003) J Mol Cell Cardiol 35(5): 473-81
    › Primary publication · 12738229 (PubMed)
53. Cyanobacterial circadian clockwork: roles of KaiA, KaiB and the kaiBC promoter in regulating KaiC. Xu Y, Mori T, Johnson CH (2003) EMBO J 22(9): 2117-26
    › Primary publication · 12727878 (PubMed) · PMC156062 (PubMed Central)
54. Bioluminescence resonance energy transfer: monitoring protein-protein interactions in living cells. Xu Y, Kanauchi A, von Arnim AG, Piston DW, Johnson CH (2003) Methods Enzymol : 289-301
    › Primary publication · 12622156 (PubMed)
55. Circadian clock protein KaiC forms ATP-dependent hexameric rings and binds DNA. Mori T, Saveliev SV, Xu Y, Stafford WF, Cox MM, Inman RB, Johnson CH (2002) Proc Natl Acad Sci U S A 99(26): 17203-8
    › Primary publication · 12477935 (PubMed) · PMC139293 (PubMed Central)
56. Bioluminescence resonance energy transfer assays for protein-protein interactions in living cells. Xu Y, Johnson CH, Piston D (2002) Methods Mol Biol : 121-33
    › Primary publication · 12136748 (PubMed)
57. Photoperiodic control of germination in the unicell Chlamydomonas. Suzuki L, Johnson CH (2002) Naturwissenschaften 89(5): 214-20
    › Primary publication · 12135086 (PubMed)
58. Dark-stimulated calcium ion fluxes in the chloroplast stroma and cytosol. Sai J, Johnson CH (2002) Plant Cell 14(6): 1279-91
    › Primary publication · 12084827 (PubMed) · PMC150780 (PubMed Central)
59. Alternative splicing yields novel BMAL2 variants: tissue distribution and functional characterization. Schoenhard JA, Eren M, Johnson CH, Vaughan DE (2002) Am J Physiol Cell Physiol 283(1): C103-14
    › Primary publication · 12055078 (PubMed)
60. Circadian programming in cyanobacteria. Mori T, Johnson CH (2001) Semin Cell Dev Biol 12(4): 271-8
    › Primary publication · 11463211 (PubMed)
61. A clock- and light-regulated gene that links the circadian oscillator to LHCB gene expression. Xu Y, Johnson CH (2001) Plant Cell 13(6): 1411-25
    › Primary publication · 11402169 (PubMed) · PMC135572 (PubMed Central)
62. Independence of circadian timing from cell division in cyanobacteria. Mori T, Johnson CH (2001) J Bacteriol 183(8): 2439-44
    › Primary publication · 11274102 (PubMed) · PMC95159 (PubMed Central)
63. Endogenous timekeepers in photosynthetic organisms. Johnson CH (2001) Annu Rev Physiol : 695-728
    › Primary publication · 11181973 (PubMed)
64. Circadian clock-protein expression in cyanobacteria: rhythms and phase setting. Xu Y, Mori T, Johnson CH (2000) EMBO J 19(13): 3349-57
    › Primary publication · 10880447 (PubMed) · PMC313937 (PubMed Central)
65. Daily and circadian variation in survival from ultraviolet radiation in Chlamydomonas reinhardtii. Nikaido SS, Johnson CH (2000) Photochem Photobiol 71(6): 758-65
    › Primary publication · 10857373 (PubMed)
66. Circadian control of cell division in unicellular organisms. Mori T, Johnson CH (2000) Prog Cell Cycle Res : 185-92
    › Primary publication · 10740825 (PubMed)
67. Forty years of PRCs--what have we learned? Johnson CH (1999) Chronobiol Int 16(6): 711-43
    › Primary publication · 10584173 (PubMed)
68. Circadian programs in cyanobacteria: adaptiveness and mechanism. Johnson CH, Golden SS (1999) Annu Rev Microbiol : 389-409
    › Primary publication · 10547696 (PubMed)
69. Different circadian oscillators control Ca(2+) fluxes and lhcb gene expression. Sai J, Johnson CH (1999) Proc Natl Acad Sci U S A 96(20): 11659-63
    › Primary publication · 10500233 (PubMed) · PMC18090 (PubMed Central)
70. A bioluminescence resonance energy transfer (BRET) system: application to interacting circadian clock proteins. Xu Y, Piston DW, Johnson CH (1999) Proc Natl Acad Sci U S A 96(1): 151-6
    › Primary publication · 9874787 (PubMed) · PMC15108 (PubMed Central)
71. Adaptive significance of circadian programs in cyanobacteria. Johnson CH, Golden SS, Kondo T (1998) Trends Microbiol 6(10): 407-10
    › Primary publication · 9807785 (PubMed)
72. Resonating circadian clocks enhance fitness in cyanobacteria. Ouyang Y, Andersson CR, Kondo T, Golden SS, Johnson CH (1998) Proc Natl Acad Sci U S A 95(15): 8660-4
    › Primary publication · 9671734 (PubMed) · PMC21132 (PubMed Central)
73. Transcription of CABII is regulated by the biological clock in Chlamydomonas reinhardtii. Jacobshagen S, Kindle KL, Johnson CH (1996) Plant Mol Biol 31(6): 1173-84
    › Primary publication · 8914533 (PubMed)
74. Circadian clocks in prokaryotes. Johnson CH, Golden SS, Ishiura M, Kondo T (1996) Mol Microbiol 21(1): 5-11
    › Primary publication · 8843429 (PubMed)
75. Circadian expression of genes involved in the purine biosynthetic pathway of the cyanobacterium Synechococcus sp. strain PCC 7942. Liu Y, Tsinoremas NF, Golden SS, Kondo T, Johnson CH (1996) Mol Microbiol 20(5): 1071-81
    › Primary publication · 8809759 (PubMed)
76. Circadian rhythms of gene expression in Chlamydomonas reinhardtii: circadian cycling of mRNA abundances of cab II, and possibly of beta-tubulin and cytochrome c. Jacobshagen S, Johnson CH (1994) Eur J Cell Biol 64(1): 142-52
    › Primary publication · 7957302 (PubMed)
77. Illuminating the clock: circadian photobiology. Johnson CH (1994) Semin Cell Biol 5(5): 355-62
    › Primary publication · 7881075 (PubMed)
78. The effects of altering extracellular potassium ion concentration on the membrane potential and circadian clock of Paramecium bursaria. Johnson CH, Nakaoka Y, Miwa I (1994) J Exp Biol : 295-308
    › Primary publication · 7852906 (PubMed)
79. Circadian orchestration of gene expression in cyanobacteria. Liu Y, Tsinoremas NF, Johnson CH, Lebedeva NV, Golden SS, Ishiura M, Kondo T (1995) Genes Dev 9(12): 1469-78
    › Primary publication · 7601351 (PubMed)
80. Circadian oscillations of cytosolic and chloroplastic free calcium in plants. Johnson CH, Knight MR, Kondo T, Masson P, Sedbrook J, Haley A, Trewavas A (1995) Science 269(5232): 1863-5
    › Primary publication · 7569925 (PubMed)
81. Bacterial luciferase as a reporter of circadian gene expression in cyanobacteria. Liu Y, Golden SS, Kondo T, Ishiura M, Johnson CH (1995) J Bacteriol 177(8): 2080-6
    › Primary publication · 7536731 (PubMed) · PMC176852 (PubMed Central)
82. Circadian phototransduction: phase resetting and frequency of the circadian clock of Gonyaulax cells in red light. Johnson CH, Hastings JW (1989) J Biol Rhythms 4(4): 417-37
    › Primary publication · 2519604 (PubMed)
83. Circadian rhythm of photoaccumulation in Paramecium bursaria. Johnson CH, Miwa I, Kondo T, Hastings JW (1989) J Biol Rhythms 4(4): 405-15
    › Primary publication · 2519603 (PubMed)
84. Cycloheximide inhibits light-induced phase shifting of the circadian clock in Neurospora. Johnson CH, Nakashima H (1990) J Biol Rhythms 5(2): 159-67
    › Primary publication · 2133125 (PubMed)
85. Light pulses induce "singular" behavior and shorten the period of the circadian phototaxis rhythm in the CW15 strain of Chlamydomonas. Johnson CH, Kondo T (1992) J Biol Rhythms 7(4): 313-27
    › Primary publication · 1286203 (PubMed)

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