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Publications

The following timeline graph is generated from all co-authored publications.

Featured publications are shown below:

  1. Wolbachia co-infection in a hybrid zone: discovery of horizontal gene transfers from two Wolbachia supergroups into an animal genome. Funkhouser-Jones LJ, Sehnert SR, Martínez-Rodríguez P, Toribio-Fernández R, Pita M, Bella JL, Bordenstein SR (2015) PeerJ : e1479
    › Primary publication · 26664808 (PubMed) · PMC4675112 (PubMed Central)
  2. MICROBIOME. Rethinking heritability of the microbiome. van Opstal EJ, Bordenstein SR (2015) Science 349(6253): 1172-3
    › Primary publication · 26359393 (PubMed)
  3. Host Biology in Light of the Microbiome: Ten Principles of Holobionts and Hologenomes. Bordenstein SR, Theis KR (2015) PLoS Biol 13(8): e1002226
    › Primary publication · 26284777 (PubMed) · PMC4540581 (PubMed Central)
  4. Bile diversion to the distal small intestine has comparable metabolic benefits to bariatric surgery. Flynn CR, Albaugh VL, Cai S, Cheung-Flynn J, Williams PE, Brucker RM, Bordenstein SR, Guo Y, Wasserman DH, Abumrad NN (2015) Nat Commun : 7715
    › Primary publication · 26197299 (PubMed) · PMC4518285 (PubMed Central)
  5. Tandem-repeat protein domains across the tree of life. Jernigan KK, Bordenstein SR (2015) PeerJ : e732
    › Primary publication · 25653910 (PubMed) · PMC4304861 (PubMed Central)
  6. The relative importance of DNA methylation and Dnmt2-mediated epigenetic regulation on Wolbachia densities and cytoplasmic incompatibility. LePage DP, Jernigan KK, Bordenstein SR (2014) PeerJ : e678
    › Primary publication · 25538866 (PubMed) · PMC4266856 (PubMed Central)
  7. Antibacterial gene transfer across the tree of life. Metcalf JA, Funkhouser-Jones LJ, Brileya K, Reysenbach AL, Bordenstein SR (2014) Elife
    › Primary publication · 25422936 (PubMed) · PMC4241558 (PubMed Central)
  8. Friends with social benefits: host-microbe interactions as a driver of brain evolution and development? Stilling RM, Bordenstein SR, Dinan TG, Cryan JF (2014) Front Cell Infect Microbiol : 147
    › Primary publication · 25401092 (PubMed) · PMC4212686 (PubMed Central)
  9. Genomic and cellular complexity from symbiotic simplicity. Bordenstein SR (2014) Cell 158(6): 1236-1237
    › Primary publication · 25215482 (PubMed) · PMC4689137 (PubMed Central)
  10. Response to Comment on "The hologenomic basis of speciation: gut bacteria cause hybrid lethality in the genus Nasonia". Brucker RM, Bordenstein SR (2014) Science 345(6200): 1011
    › Primary publication · 25170145 (PubMed)
  11. Recent genome reduction of Wolbachia in Drosophila recens targets phage WO and narrows candidates for reproductive parasitism. Metcalf JA, Jo M, Bordenstein SR, Jaenike J, Bordenstein SR (2014) PeerJ : e529
    › Primary publication · 25165636 (PubMed) · PMC4137656 (PubMed Central)
  12. Ankyrin domains across the Tree of Life. Jernigan KK, Bordenstein SR (2014) PeerJ : e264
    › Primary publication · 24688847 (PubMed) · PMC3932732 (PubMed Central)
  13. Early life establishment of site-specific microbial communities in the gut. Romano-Keeler J, Moore DJ, Wang C, Brucker RM, Fonnesbeck C, Slaughter JC, Li H, Curran DP, Meng S, Correa H, Lovvorn HN, Tang YW, Bordenstein S, George AL, Weitkamp JH (2014) Gut Microbes 5(2): 192-201
    › Primary publication · 24637795 (PubMed) · PMC4063844 (PubMed Central)
  14. The capacious hologenome. Brucker RM, Bordenstein SR (2013) Zoology (Jena) 116(5): 260-1
    › Primary publication · 24035647 (PubMed)
  15. Mom knows best: the universality of maternal microbial transmission. Funkhouser LJ, Bordenstein SR (2013) PLoS Biol 11(8): e1001631
    › Primary publication · 23976878 (PubMed) · PMC3747981 (PubMed Central)
  16. The hologenomic basis of speciation: gut bacteria cause hybrid lethality in the genus Nasonia. Brucker RM, Bordenstein SR (2013) Science 341(6146): 667-9
    › Primary publication · 23868918 (PubMed)
  17. Wolbachia: Can we save lives with a great pandemic? LePage D, Bordenstein SR (2013) Trends Parasitol 29(8): 385-93
    › Primary publication · 23845310 (PubMed) · PMC3775348 (PubMed Central)
  18. Comparative genomic analysis of East Asian and non-Asian Helicobacter pylori strains identifies rapidly evolving genes. Duncan SS, Valk PL, McClain MS, Shaffer CL, Metcalf JA, Bordenstein SR, Cover TL (2013) PLoS One 8(1): e55120
    › Primary publication · 23383074 (PubMed) · PMC3561388 (PubMed Central)
  19. In vitro cultivation of the hymenoptera genetic model, Nasonia. Brucker RM, Bordenstein SR (2012) PLoS One 7(12): e51269
    › Primary publication · 23227258 (PubMed) · PMC3515518 (PubMed Central)
  20. Insect Innate Immunity Database (IIID): an annotation tool for identifying immune genes in insect genomes. Brucker RM, Funkhouser LJ, Setia S, Pauly R, Bordenstein SR (2012) PLoS One 7(9): e45125
    › Primary publication · 22984621 (PubMed) · PMC3440344 (PubMed Central)
  21. The complexity of virus systems: the case of endosymbionts. Metcalf JA, Bordenstein SR (2012) Curr Opin Microbiol 15(4): 546-52
    › Primary publication · 22609369 (PubMed) · PMC3424318 (PubMed Central)
  22. Speciation by symbiosis. Brucker RM, Bordenstein SR (2012) Trends Ecol Evol 27(8): 443-51
    › Primary publication · 22541872 (PubMed)
  23. The roles of host evolutionary relationships (genus: Nasonia) and development in structuring microbial communities. Brucker RM, Bordenstein SR (2012) Evolution 66(2): 349-62
    › Primary publication · 22276533 (PubMed)
  24. J-Western forms of Helicobacter pylori cagA constitute a distinct phylogenetic group with a widespread geographic distribution. Duncan SS, Valk PL, Shaffer CL, Bordenstein SR, Cover TL (2012) J Bacteriol 194(6): 1593-604
    › Primary publication · 22247512 (PubMed) · PMC3294863 (PubMed Central)
  25. Temperature affects the tripartite interactions between bacteriophage WO, Wolbachia, and cytoplasmic incompatibility. Bordenstein SR, Bordenstein SR (2011) PLoS One 6(12): e29106
    › Primary publication · 22194999 (PubMed) · PMC3240643 (PubMed Central)
  26. Evolutionary genomics of a temperate bacteriophage in an obligate intracellular bacteria (Wolbachia). Kent BN, Funkhouser LJ, Setia S, Bordenstein SR (2011) PLoS One 6(9): e24984
    › Primary publication · 21949820 (PubMed) · PMC3173496 (PubMed Central)
  27. Disruption of the termite gut microbiota and its prolonged consequences for fitness. Rosengaus RB, Zecher CN, Schultheis KF, Brucker RM, Bordenstein SR (2011) Appl Environ Microbiol 77(13): 4303-12
    › Primary publication · 21571887 (PubMed) · PMC3127728 (PubMed Central)
  28. Complete bacteriophage transfer in a bacterial endosymbiont (Wolbachia) determined by targeted genome capture. Kent BN, Salichos L, Gibbons JG, Rokas A, Newton IL, Clark ME, Bordenstein SR (2011) Genome Biol Evol : 209-18
    › Primary publication · 21292630 (PubMed) · PMC3068000 (PubMed Central)
  29. Decoupling of host-symbiont-phage coadaptations following transfer between insect species. Chafee ME, Zecher CN, Gourley ML, Schmidt VT, Chen JH, Bordenstein SR, Clark ME, Bordenstein SR (2011) Genetics 187(1): 203-15
    › Primary publication · 20944019 (PubMed) · PMC3018312 (PubMed Central)
  30. Molecular evolution of the Helicobacter pylori vacuolating toxin gene vacA. Gangwer KA, Shaffer CL, Suerbaum S, Lacy DB, Cover TL, Bordenstein SR (2010) J Bacteriol 192(23): 6126-35
    › Primary publication · 20870762 (PubMed) · PMC2981223 (PubMed Central)
  31. Correlations between bacterial ecology and mobile DNA. Newton IL, Bordenstein SR (2011) Curr Microbiol 62(1): 198-208
    › Primary publication · 20577742 (PubMed) · PMC3006647 (PubMed Central)
  32. Phage WO of Wolbachia: lambda of the endosymbiont world. Kent BN, Bordenstein SR (2010) Trends Microbiol 18(4): 173-81
    › Primary publication · 20083406 (PubMed) · PMC2862486 (PubMed Central)
  33. Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Nasonia Genome Working Group, Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Beukeboom LW, Desplan C, Elsik CG, Grimmelikhuijzen CJ, Kitts P, Lynch JA, Murphy T, Oliveira DC, Smith CD, van de Zande L, Worley KC, Zdobnov EM, Aerts M, Albert S, Anaya VH, Anzola JM, Barchuk AR, Behura SK, Bera AN, Berenbaum MR, Bertossa RC, Bitondi MM, Bordenstein SR, Bork P, Bornberg-Bauer E, Brunain M, Cazzamali G, Chaboub L, Chacko J, Chavez D, Childers CP, Choi JH, Clark ME, Claudianos C, Clinton RA, Cree AG, Cristino AS, Dang PM, Darby AC, de Graaf DC, Devreese B, Dinh HH, Edwards R, Elango N, Elhaik E, Ermolaeva O, Evans JD, Foret S, Fowler GR, Gerlach D, Gibson JD, Gilbert DG, Graur D, Gründer S, Hagen DE, Han Y, Hauser F, Hultmark D, Hunter HC, Hurst GD, Jhangian SN, Jiang H, Johnson RM, Jones AK, Junier T, Kadowaki T, Kamping A, Kapustin Y, Kechavarzi B, Kim J, Kim J, Kiryutin B, Koevoets T, Kovar CL, Kriventseva EV, Kucharski R, Lee H, Lee SL, Lees K, Lewis LR, Loehlin DW, Logsdon JM, Lopez JA, Lozado RJ, Maglott D, Maleszka R, Mayampurath A, Mazur DJ, McClure MA, Moore AD, Morgan MB, Muller J, Munoz-Torres MC, Muzny DM, Nazareth LV, Neupert S, Nguyen NB, Nunes FM, Oakeshott JG, Okwuonu GO, Pannebakker BA, Pejaver VR, Peng Z, Pratt SC, Predel R, Pu LL, Ranson H, Raychoudhury R, Rechtsteiner A, Reese JT, Reid JG, Riddle M, Robertson HM, Romero-Severson J, Rosenberg M, Sackton TB, Sattelle DB, Schlüns H, Schmitt T, Schneider M, Schüler A, Schurko AM, Shuker DM, Simões ZL, Sinha S, Smith Z, Solovyev V, Souvorov A, Springauf A, Stafflinger E, Stage DE, Stanke M, Tanaka Y, Telschow A, Trent C, Vattathil S, Verhulst EC, Viljakainen L, Wanner KW, Waterhouse RM, Whitfield JB, Wilkes TE, Williamson M, Willis JH, Wolschin F, Wyder S, Yamada T, Yi SV, Zecher CN, Zhang L, Gibbs RA (2010) Science 327(5963): 343-8
    › Primary publication · 20075255 (PubMed) · PMC2849982 (PubMed Central)
  34. Lateral phage transfer in obligate intracellular bacteria (wolbachia): verification from natural populations. Chafee ME, Funk DJ, Harrison RG, Bordenstein SR (2010) Mol Biol Evol 27(3): 501-5
    › Primary publication · 19906794 (PubMed) · PMC2822291 (PubMed Central)
  35. Extensive genomic diversity of closely related Wolbachia strains. Ishmael N, Dunning Hotopp JC, Ioannidis P, Biber S, Sakamoto J, Siozios S, Nene V, Werren J, Bourtzis K, Bordenstein SR, Tettelin H (2009) Microbiology 155(Pt 7): 2211-22
    › Primary publication · 19389774 (PubMed) · PMC2888116 (PubMed Central)
  36. Parasitism and mutualism in Wolbachia: what the phylogenomic trees can and cannot say. Bordenstein SR, Paraskevopoulos C, Dunning Hotopp JC, Sapountzis P, Lo N, Bandi C, Tettelin H, Werren JH, Bourtzis K (2009) Mol Biol Evol 26(1): 231-41
    › Primary publication · 18974066 (PubMed) · PMC2721558 (PubMed Central)
  37. Evolutionary genomics: transdomain gene transfers. Bordenstein SR (2007) Curr Biol 17(21): R935-6
    › Primary publication · 17983575 (PubMed)
  38. New criteria for selecting the origin of DNA replication in Wolbachia and closely related bacteria. Ioannidis P, Dunning Hotopp JC, Sapountzis P, Siozios S, Tsiamis G, Bordenstein SR, Baldo L, Werren JH, Bourtzis K (2007) BMC Genomics : 182
    › Primary publication · 17584494 (PubMed) · PMC1914354 (PubMed Central)
  39. Bidirectional incompatibility among divergent Wolbachia and incompatibility level differences among closely related Wolbachia in Nasonia. Bordenstein SR, Werren JH (2007) Heredity (Edinb) 99(3): 278-87
    › Primary publication · 17519968 (PubMed)
  40. Taxonomic status of the intracellular bacterium Wolbachia pipientis. Lo N, Paraskevopoulos C, Bourtzis K, O'Neill SL, Werren JH, Bordenstein SR, Bandi C (2007) Int J Syst Evol Microbiol 57(Pt 3): 654-7
    › Primary publication · 17329802 (PubMed)
  41. Disruption of the Wolbachia surface protein gene wspB by a transposable element in mosquitoes of the Culex pipiens complex (Diptera, Culicidae). Sanogo YO, Dobson SL, Bordenstein SR, Novak RJ (2007) Insect Mol Biol 16(2): 143-54
    › Primary publication · 17298560 (PubMed)
  42. Toward a Wolbachia multilocus sequence typing system: discrimination of Wolbachia strains present in Drosophila species. Paraskevopoulos C, Bordenstein SR, Wernegreen JJ, Werren JH, Bourtzis K (2006) Curr Microbiol 53(5): 388-95
    › Primary publication · 17036209 (PubMed)
  43. Multilocus sequence typing system for the endosymbiont Wolbachia pipientis. Baldo L, Dunning Hotopp JC, Jolley KA, Bordenstein SR, Biber SA, Choudhury RR, Hayashi C, Maiden MC, Tettelin H, Werren JH (2006) Appl Environ Microbiol 72(11): 7098-110
    › Primary publication · 16936055 (PubMed) · PMC1636189 (PubMed Central)
  44. The tripartite associations between bacteriophage, Wolbachia, and arthropods. Bordenstein SR, Marshall ML, Fry AJ, Kim U, Wernegreen JJ (2006) PLoS Pathog 2(5): e43
    › Primary publication · 16710453 (PubMed) · PMC1463016 (PubMed Central)
  45. Phylogeny of Wolbachia pipientis based on gltA, groEL and ftsZ gene sequences: clustering of arthropod and nematode symbionts in the F supergroup, and evidence for further diversity in the Wolbachia tree. Casiraghi M, Bordenstein SR, Baldo L, Lo N, Beninati T, Wernegreen JJ, Werren JH, Bandi C (2005) Microbiology 151(Pt 12): 4015-22
    › Primary publication · 16339946 (PubMed)
  46. Widespread recombination throughout Wolbachia genomes. Baldo L, Bordenstein S, Wernegreen JJ, Werren JH (2006) Mol Biol Evol 23(2): 437-49
    › Primary publication · 16267140 (PubMed)
  47. Discovery of a novel Wolbachia super group in Isoptera. Bordenstein S, Rosengaus RB (2005) Curr Microbiol 51(6): 393-8
    › Primary publication · 16252129 (PubMed)
  48. Mobile DNA in obligate intracellular bacteria. Bordenstein SR, Reznikoff WS (2005) Nat Rev Microbiol 3(9): 688-99
    › Primary publication · 16138097 (PubMed)
  49. Comparative sequence analysis of IS50/Tn5 transposase. Reznikoff WS, Bordenstein SR, Apodaca J (2004) J Bacteriol 186(24): 8240-7
    › Primary publication · 15576772 (PubMed) · PMC532410 (PubMed Central)
  50. Bacteriophage flux in endosymbionts (Wolbachia): infection frequency, lateral transfer, and recombination rates. Bordenstein SR, Wernegreen JJ (2004) Mol Biol Evol 21(10): 1981-91
    › Primary publication · 15254259 (PubMed)