Antonios Rokas
Last active: 3/21/2018

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Publications

The following timeline graph is generated from all co-authored publications.

Featured publications are shown below:

  1. Copy Number Variation in Fungi and Its Implications for Wine Yeast Genetic Diversity and Adaptation. Steenwyk JL, Rokas A (2018) Front Microbiol : 288
    › Primary publication · 29520259 (PubMed) · PMC5826948 (PubMed Central)
  2. Factors driving metabolic diversity in the budding yeast subphylum. Opulente DA, Rollinson EJ, Bernick-Roehr C, Hulfachor AB, Rokas A, Kurtzman CP, Hittinger CT (2018) BMC Biol 16(1): 26
    › Primary publication · 29499717 (PubMed) · PMC5833115 (PubMed Central)
  3. Examination of Signatures of Recent Positive Selection on Genes Involved in Human Sialic Acid Biology. Moon JM, Aronoff DM, Capra JA, Abbot P, Rokas A (2018) G3 (Bethesda) 8(4): 1315-1325
    › Primary publication · 29467190 (PubMed) · PMC5873920 (PubMed Central)
  4. Inverted formin 2 regulates intracellular trafficking, placentation, and pregnancy outcome. Lamm KYB, Johnson ML, Baker Phillips J, Muntifering MB, James JM, Jones HN, Redline RW, Rokas A, Muglia LJ (2018) Elife
    › Primary publication · 29309034 (PubMed) · PMC5758111 (PubMed Central)
  5. Evaluating Fast Maximum Likelihood-Based Phylogenetic Programs Using Empirical Phylogenomic Data Sets. Zhou X, Shen XX, Hittinger CT, Rokas A (2018) Mol Biol Evol 35(2): 486-503
    › Primary publication · 29177474 (PubMed) · PMC5850867 (PubMed Central)
  6. Drivers of genetic diversity in secondary metabolic gene clusters within a fungal species. Lind AL, Wisecaver JH, Lameiras C, Wiemann P, Palmer JM, Keller NP, Rodrigues F, Goldman GH, Rokas A (2017) PLoS Biol 15(11): e2003583
    › Primary publication · 29149178 (PubMed) · PMC5711037 (PubMed Central)
  7. Selective base excision repair of DNA damage by the non-base-flipping DNA glycosylase AlkC. Shi R, Mullins EA, Shen XX, Lay KT, Yuen PK, David SS, Rokas A, Eichman BF (2018) EMBO J 37(1): 63-74
    › Primary publication · 29054852 (PubMed) · PMC5753038 (PubMed Central)
  8. Embracing Uncertainty in Reconstructing Early Animal Evolution. King N, Rokas A (2017) Curr Biol 27(19): R1081-R1088
    › Primary publication · 29017048 (PubMed) · PMC5679448 (PubMed Central)
  9. The transformative potential of an integrative approach to pregnancy. Eidem HR, McGary KL, Capra JA, Abbot P, Rokas A (2017) Placenta : 204-215
    › Primary publication · 28864013 (PubMed)
  10. Correction: Heredity: The gene family that cheats Mendel. Shropshire JD, Rokas A (2017) Elife
    › Primary publication · 28829287 (PubMed) · PMC5577989 (PubMed Central)
  11. LFO1 Is an IsdG Family Heme Oxygenase. Lojek LJ, Farrand AJ, Wisecaver JH, Blaby-Haas CE, Michel BW, Merchant SS, Rokas A, Skaar EP (2017) mSphere 2(4)
    › Primary publication · 28815214 (PubMed) · PMC5557675 (PubMed Central)
  12. Contentious relationships in phylogenomic studies can be driven by a handful of genes. Shen XX, Hittinger CT, Rokas A (2017) Nat Ecol Evol 1(5): 126
    › Primary publication · 28812701 (PubMed) · PMC5560076 (PubMed Central)
  13. Functional variants of the melanocortin-4 receptor associated with the Odontoceti and Mysticeti suborders of cetaceans. Zhao L, Zhou X, Rokas A, Cone RD (2017) Sci Rep 7(1): 5684
    › Primary publication · 28720755 (PubMed) · PMC5515947 (PubMed Central)
  14. MybA, a transcription factor involved in conidiation and conidial viability of the human pathogen Aspergillus fumigatus. Valsecchi I, Sarikaya-Bayram Ö, Wong Sak Hoi J, Muszkieta L, Gibbons J, Prevost MC, Mallet A, Krijnse-Locker J, Ibrahim-Granet O, Mouyna I, Carr P, Bromley M, Aimanianda V, Yu JH, Rokas A, Braus GH, Saveanu C, Bayram Ö, Latgé JP (2017) Mol Microbiol 105(6): 880-900
    › Primary publication · 28677124 (PubMed)
  15. WetA bridges cellular and chemical development in Aspergillus flavus. Wu MY, Mead ME, Kim SC, Rokas A, Yu JH (2017) PLoS One 12(6): e0179571
    › Primary publication · 28658268 (PubMed) · PMC5489174 (PubMed Central)
  16. The gene family that cheats Mendel. Shropshire JD, Rokas A (2017) Elife
    › Primary publication · 28631611 (PubMed) · PMC5478260 (PubMed Central)
  17. Collagen IV and basement membrane at the evolutionary dawn of metazoan tissues. Fidler AL, Darris CE, Chetyrkin SV, Pedchenko VK, Boudko SP, Brown KL, Gray Jerome W, Hudson JK, Rokas A, Hudson BG (2017) Elife
    › Primary publication · 28418331 (PubMed) · PMC5395295 (PubMed Central)
  18. A Global Coexpression Network Approach for Connecting Genes to Specialized Metabolic Pathways in Plants. Wisecaver JH, Borowsky AT, Tzin V, Jander G, Kliebenstein DJ, Rokas A (2017) Plant Cell 29(5): 944-959
    › Primary publication · 28408660 (PubMed) · PMC5466033 (PubMed Central)
  19. Extensive Copy Number Variation in Fermentation-Related Genes Among Wine Strains. Steenwyk J, Rokas A (2017) G3 (Bethesda) 7(5): 1475-1485
    › Primary publication · 28292787 (PubMed) · PMC5427499 (PubMed Central)
  20. Mammalian pregnancy. Abbot P, Rokas A (2017) Curr Biol 27(4): R127-R128
    › Primary publication · 28222284 (PubMed)
  21. CTDGFinder: A Novel Homology-Based Algorithm for Identifying Closely Spaced Clusters of Tandemly Duplicated Genes. Ortiz JF, Rokas A (2017) Mol Biol Evol 34(1): 215-229
    › Primary publication · 28007975 (PubMed)
  22. Regulation of Secondary Metabolism by the Velvet Complex Is Temperature-Responsive in Aspergillus. Lind AL, Smith TD, Saterlee T, Calvo AM, Rokas A (2016) G3 (Bethesda) 6(12): 4023-4033
    › Primary publication · 27694115 (PubMed) · PMC5144971 (PubMed Central)
  23. Reconstructing the Backbone of the Saccharomycotina Yeast Phylogeny Using Genome-Scale Data. Shen XX, Zhou X, Kominek J, Kurtzman CP, Hittinger CT, Rokas A (2016) G3 (Bethesda) 6(12): 3927-3939
    › Primary publication · 27672114 (PubMed) · PMC5144963 (PubMed Central)
  24. Whole Genome Sequencer and Analyzer (iWGS): a Computational Pipeline to Guide the Design and Analysis of Genome Sequencing Studies. Zhou X, Peris D, Kominek J, Kurtzman CP, Hittinger CT, Rokas A (2016) G3 (Bethesda) 6(11): 3655-3662
    › Primary publication · 27638685 (PubMed) · PMC5100864 (PubMed Central)
  25. Comparative genomics of biotechnologically important yeasts. Riley R, Haridas S, Wolfe KH, Lopes MR, Hittinger CT, Göker M, Salamov AA, Wisecaver JH, Long TM, Calvey CH, Aerts AL, Barry KW, Choi C, Clum A, Coughlan AY, Deshpande S, Douglass AP, Hanson SJ, Klenk HP, LaButti KM, Lapidus A, Lindquist EA, Lipzen AM, Meier-Kolthoff JP, Ohm RA, Otillar RP, Pangilinan JL, Peng Y, Rokas A, Rosa CA, Scheuner C, Sibirny AA, Slot JC, Stielow JB, Sun H, Kurtzman CP, Blackwell M, Grigoriev IV, Jeffries TW (2016) Proc Natl Acad Sci U S A 113(35): 9882-7
    › Primary publication · 27535936 (PubMed) · PMC5024638 (PubMed Central)
  26. A Genome-Scale Investigation of How Sequence, Function, and Tree-Based Gene Properties Influence Phylogenetic Inference. Shen XX, Salichos L, Rokas A (2016) Genome Biol Evol 8(8): 2565-80
    › Primary publication · 27492233 (PubMed) · PMC5010910 (PubMed Central)
  27. Comprehensive RNA profiling of villous trophoblast and decidua basalis in pregnancies complicated by preterm birth following intra-amniotic infection. Ackerman WE, Buhimschi IA, Eidem HR, Rinker DC, Rokas A, Rood K, Zhao G, Summerfield TL, Landon MB, Buhimschi CS (2016) Placenta : 23-33
    › Primary publication · 27452435 (PubMed)
  28. Comparing human and macaque placental transcriptomes to disentangle preterm birth pathology from gestational age effects. Eidem HR, Rinker DC, Ackerman WE, Buhimschi IA, Buhimschi CS, Dunn-Fletcher C, Kallapur SG, Pavličev M, Muglia LJ, Abbot P, Rokas A (2016) Placenta : 74-82
    › Primary publication · 27208410 (PubMed)
  29. Dynamic Evolution of Nitric Oxide Detoxifying Flavohemoglobins, a Family of Single-Protein Metabolic Modules in Bacteria and Eukaryotes. Wisecaver JH, Alexander WG, King SB, Hittinger CT, Rokas A (2016) Mol Biol Evol 33(8): 1979-87
    › Primary publication · 27189567 (PubMed)
  30. Horizontally acquired genes in early-diverging pathogenic fungi enable the use of host nucleosides and nucleotides. Alexander WG, Wisecaver JH, Rokas A, Hittinger CT (2016) Proc Natl Acad Sci U S A 113(15): 4116-21
    › Primary publication · 27035945 (PubMed) · PMC4839431 (PubMed Central)
  31. Computing the Internode Certainty and Related Measures from Partial Gene Trees. Kobert K, Salichos L, Rokas A, Stamatakis A (2016) Mol Biol Evol 33(6): 1606-17
    › Primary publication · 26915959 (PubMed) · PMC4868120 (PubMed Central)
  32. Evolution of a Heavy Metal Homeostasis/Resistance Island Reflects Increasing Copper Stress in Enterobacteria. Staehlin BM, Gibbons JG, Rokas A, O'Halloran TV, Slot JC (2016) Genome Biol Evol 8(3): 811-26
    › Primary publication · 26893455 (PubMed) · PMC4824010 (PubMed Central)
  33. Editorial overview: Genomes and evolution: "Seq-ing" answers in life's genomes. Rokas A, Soltis PS (2015) Curr Opin Genet Dev : iv-vi
    › Primary publication · 26684354 (PubMed)
  34. Genomics and the making of yeast biodiversity. Hittinger CT, Rokas A, Bai FY, Boekhout T, Gonçalves P, Jeffries TW, Kominek J, Lachance MA, Libkind D, Rosa CA, Sampaio JP, Kurtzman CP (2015) Curr Opin Genet Dev : 100-9
    › Primary publication · 26649756 (PubMed) · PMC4771062 (PubMed Central)
  35. Integrating Diverse Types of Genomic Data to Identify Genes that Underlie Adverse Pregnancy Phenotypes. Hirbo J, Eidem H, Rokas A, Abbot P (2015) PLoS One 10(12): e0144155
    › Primary publication · 26641094 (PubMed) · PMC4671692 (PubMed Central)
  36. A Genome-Scale Investigation of Incongruence in Culicidae Mosquitoes. Wang Y, Zhou X, Yang D, Rokas A (2015) Genome Biol Evol 7(12): 3463-71
    › Primary publication · 26608059 (PubMed) · PMC4700963 (PubMed Central)
  37. GEneSTATION 1.0: a synthetic resource of diverse evolutionary and functional genomic data for studying the evolution of pregnancy-associated tissues and phenotypes. Kim M, Cooper BA, Venkat R, Phillips JB, Eidem HR, Hirbo J, Nutakki S, Williams SM, Muglia LJ, Capra JA, Petren K, Abbot P, Rokas A, McGary KL (2016) Nucleic Acids Res 44(D1): D908-16
    › Primary publication · 26567549 (PubMed) · PMC4702823 (PubMed Central)
  38. Correction: The Evolution of Fungal Metabolic Pathways. Wisecaver JH, Slot JC, Rokas A (2015) PLoS Genet 11(9): e1005449
    › Primary publication · 26378934 (PubMed) · PMC4574946 (PubMed Central)
  39. Chemoreceptor Evolution in Hymenoptera and Its Implications for the Evolution of Eusociality. Zhou X, Rokas A, Berger SL, Liebig J, Ray A, Zwiebel LJ (2015) Genome Biol Evol 7(8): 2407-16
    › Primary publication · 26272716 (PubMed) · PMC4558866 (PubMed Central)
  40. Is preterm birth a human-specific syndrome? Phillips JB, Abbot P, Rokas A (2015) Evol Med Public Health 2015(1): 136-48
    › Primary publication · 26077822 (PubMed) · PMC4493222 (PubMed Central)
  41. Gestational tissue transcriptomics in term and preterm human pregnancies: a systematic review and meta-analysis. Eidem HR, Ackerman WE, McGary KL, Abbot P, Rokas A (2015) BMC Med Genomics : 27
    › Primary publication · 26044726 (PubMed) · PMC4456776 (PubMed Central)
  42. Examining the evolution of the regulatory circuit controlling secondary metabolism and development in the fungal genus Aspergillus. Lind AL, Wisecaver JH, Smith TD, Feng X, Calvo AM, Rokas A (2015) PLoS Genet 11(3): e1005096
    › Primary publication · 25786130 (PubMed) · PMC4364702 (PubMed Central)
  43. Fungal metabolic gene clusters-caravans traveling across genomes and environments. Wisecaver JH, Rokas A (2015) Front Microbiol : 161
    › Primary publication · 25784900 (PubMed) · PMC4347624 (PubMed Central)
  44. Shared Selective Pressures on Fungal and Human Metabolic Pathways Lead to Divergent yet Analogous Genetic Responses. Eidem HR, McGary KL, Rokas A (2015) Mol Biol Evol 32(6): 1449-55
    › Primary publication · 25681382 (PubMed)
  45. Clustering of two genes putatively involved in cyanate detoxification evolved recently and independently in multiple fungal lineages. Elmore MH, McGary KL, Wisecaver JH, Slot JC, Geiser DM, Sink S, O'Donnell K, Rokas A (2015) Genome Biol Evol 7(3): 789-800
    › Primary publication · 25663439 (PubMed) · PMC4438557 (PubMed Central)
  46. Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes. Neafsey DE, Waterhouse RM, Abai MR, Aganezov SS, Alekseyev MA, Allen JE, Amon J, Arcà B, Arensburger P, Artemov G, Assour LA, Basseri H, Berlin A, Birren BW, Blandin SA, Brockman AI, Burkot TR, Burt A, Chan CS, Chauve C, Chiu JC, Christensen M, Costantini C, Davidson VL, Deligianni E, Dottorini T, Dritsou V, Gabriel SB, Guelbeogo WM, Hall AB, Han MV, Hlaing T, Hughes DS, Jenkins AM, Jiang X, Jungreis I, Kakani EG, Kamali M, Kemppainen P, Kennedy RC, Kirmitzoglou IK, Koekemoer LL, Laban N, Langridge N, Lawniczak MK, Lirakis M, Lobo NF, Lowy E, MacCallum RM, Mao C, Maslen G, Mbogo C, McCarthy J, Michel K, Mitchell SN, Moore W, Murphy KA, Naumenko AN, Nolan T, Novoa EM, O'Loughlin S, Oringanje C, Oshaghi MA, Pakpour N, Papathanos PA, Peery AN, Povelones M, Prakash A, Price DP, Rajaraman A, Reimer LJ, Rinker DC, Rokas A, Russell TL, Sagnon N, Sharakhova MV, Shea T, Simão FA, Simard F, Slotman MA, Somboon P, Stegniy V, Struchiner CJ, Thomas GW, Tojo M, Topalis P, Tubio JM, Unger MF, Vontas J, Walton C, Wilding CS, Willis JH, Wu YC, Yan G, Zdobnov EM, Zhou X, Catteruccia F, Christophides GK, Collins FH, Cornman RS, Crisanti A, Donnelly MJ, Emrich SJ, Fontaine MC, Gelbart W, Hahn MW, Hansen IA, Howell PI, Kafatos FC, Kellis M, Lawson D, Louis C, Luckhart S, Muskavitch MA, Ribeiro JM, Riehle MA, Sharakhov IV, Tu Z, Zwiebel LJ, Besansky NJ (2015) Science 347(6217): 1258522
    › Primary publication · 25554792 (PubMed) · PMC4380271 (PubMed Central)
  47. The evolution of fungal metabolic pathways. Wisecaver JH, Slot JC, Rokas A (2014) PLoS Genet 10(12): e1004816
    › Primary publication · 25474404 (PubMed) · PMC4256263 (PubMed Central)
  48. Divergent and conserved elements comprise the chemoreceptive repertoire of the nonblood-feeding mosquito Toxorhynchites amboinensis. Zhou X, Rinker DC, Pitts RJ, Rokas A, Zwiebel LJ (2014) Genome Biol Evol 6(10): 2883-96
    › Primary publication · 25326137 (PubMed) · PMC4224357 (PubMed Central)
  49. Evaluating rare amino acid substitutions (RGC_CAMs) in a yeast model clade. Polzin K, Rokas A (2014) PLoS One 9(3): e92213
    › Primary publication · 24637883 (PubMed) · PMC3956930 (PubMed Central)
  50. Novel information theory-based measures for quantifying incongruence among phylogenetic trees. Salichos L, Stamatakis A, Rokas A (2014) Mol Biol Evol 31(5): 1261-71
    › Primary publication · 24509691 (PubMed)
  51. Prevention, diagnosis and treatment of high-throughput sequencing data pathologies. Zhou X, Rokas A (2014) Mol Ecol 23(7): 1679-700
    › Primary publication · 24471475 (PubMed)
  52. Functional divergence for every paralog. Soria PS, McGary KL, Rokas A (2014) Mol Biol Evol 31(4): 984-92
    › Primary publication · 24451325 (PubMed)
  53. Ecology drives the distribution of specialized tyrosine metabolism modules in fungi. Greene GH, McGary KL, Rokas A, Slot JC (2014) Genome Biol Evol 6(1): 121-32
    › Primary publication · 24391152 (PubMed) · PMC3914699 (PubMed Central)
  54. Genetics. My oldest sister is a sea walnut? Rokas A (2013) Science 342(6164): 1327-9
    › Primary publication · 24337283 (PubMed)
  55. Recurrent tissue-specific mtDNA mutations are common in humans. Samuels DC, Li C, Li B, Song Z, Torstenson E, Boyd Clay H, Rokas A, Thornton-Wells TA, Moore JH, Hughes TM, Hoffman RD, Haines JL, Murdock DG, Mortlock DP, Williams SM (2013) PLoS Genet 9(11): e1003929
    › Primary publication · 24244193 (PubMed) · PMC3820769 (PubMed Central)
  56. Antennal transcriptome profiles of anopheline mosquitoes reveal human host olfactory specialization in Anopheles gambiae. Rinker DC, Zhou X, Pitts RJ, AGC Consortium, Rokas A, Zwiebel LJ (2013) BMC Genomics : 749
    › Primary publication · 24182346 (PubMed) · PMC3833343 (PubMed Central)
  57. The fumagillin gene cluster, an example of hundreds of genes under veA control in Aspergillus fumigatus. Dhingra S, Lind AL, Lin HC, Tang Y, Rokas A, Calvo AM (2013) PLoS One 8(10): e77147
    › Primary publication · 24116213 (PubMed) · PMC3792039 (PubMed Central)
  58. Repeated loss of an anciently horizontally transferred gene cluster in Botrytis. Campbell MA, Staats M, van Kan JA, Rokas A, Slot JC (2013) Mycologia 105(5): 1126-34
    › Primary publication · 23921237 (PubMed)
  59. Physical linkage of metabolic genes in fungi is an adaptation against the accumulation of toxic intermediate compounds. McGary KL, Slot JC, Rokas A (2013) Proc Natl Acad Sci U S A 110(28): 11481-6
    › Primary publication · 23798424 (PubMed) · PMC3710872 (PubMed Central)
  60. Inferring ancient divergences requires genes with strong phylogenetic signals. Salichos L, Rokas A (2013) Nature 497(7449): 327-31
    › Primary publication · 23657258 (PubMed)
  61. Blood meal-induced changes to antennal transcriptome profiles reveal shifts in odor sensitivities in Anopheles gambiae. Rinker DC, Pitts RJ, Zhou X, Suh E, Rokas A, Zwiebel LJ (2013) Proc Natl Acad Sci U S A 110(20): 8260-5
    › Primary publication · 23630291 (PubMed) · PMC3657813 (PubMed Central)
  62. Putting pleiotropy and selection into context defines a new paradigm for interpreting genetic data. Predazzi IM, Rokas A, Deinard A, Schnetz-Boutaud N, Williams ND, Bush WS, Tacconelli A, Friedrich K, Fazio S, Novelli G, Haines JL, Sirugo G, Williams SM (2013) Circ Cardiovasc Genet 6(3): 299-307
    › Primary publication · 23616601 (PubMed) · PMC3889706 (PubMed Central)
  63. Aspergillus. Rokas A (2013) Curr Biol 23(5): R187-8
    › Primary publication · 23473556 (PubMed)
  64. Non-optimal codon usage is a mechanism to achieve circadian clock conditionality. Xu Y, Ma P, Shah P, Rokas A, Liu Y, Johnson CH (2013) Nature 495(7439): 116-20
    › Primary publication · 23417065 (PubMed) · PMC3593822 (PubMed Central)
  65. Assessing the genome-wide effect of promoter region tandem repeat natural variation on gene expression. Elmore MH, Gibbons JG, Rokas A (2012) G3 (Bethesda) 2(12): 1643-9
    › Primary publication · 23275886 (PubMed) · PMC3516485 (PubMed Central)
  66. Non-productive DNA damage binding by DNA glycosylase-like protein Mag2 from Schizosaccharomyces pombe. Adhikary S, Cato MC, McGary KL, Rokas A, Eichman BF (2013) DNA Repair (Amst) 12(3): 196-204
    › Primary publication · 23273506 (PubMed) · PMC4008723 (PubMed Central)
  67. The diverse applications of RNA-seq for functional genomic studies in Aspergillus fumigatus. Rokas A, Gibbons JG, Zhou X, Beauvais A, Latgé JP (2012) Ann N Y Acad Sci : 25-34
    › Primary publication · 23230834 (PubMed) · PMC3531914 (PubMed Central)
  68. Phylogenetic and transcriptomic analysis of chemosensory receptors in a pair of divergent ant species reveals sex-specific signatures of odor coding. Zhou X, Slone JD, Rokas A, Berger SL, Liebig J, Ray A, Reinberg D, Zwiebel LJ (2012) PLoS Genet 8(8): e1002930
    › Primary publication · 22952454 (PubMed) · PMC3431598 (PubMed Central)
  69. Two different secondary metabolism gene clusters occupied the same ancestral locus in fungal dermatophytes of the arthrodermataceae. Zhang H, Rokas A, Slot JC (2012) PLoS One 7(7): e41903
    › Primary publication · 22860027 (PubMed) · PMC3408471 (PubMed Central)
  70. The evolutionary imprint of domestication on genome variation and function of the filamentous fungus Aspergillus oryzae. Gibbons JG, Salichos L, Slot JC, Rinker DC, McGary KL, King JG, Klich MA, Tabb DL, McDonald WH, Rokas A (2012) Curr Biol 22(15): 1403-9
    › Primary publication · 22795693 (PubMed) · PMC3416971 (PubMed Central)
  71. The ASP3 locus in Saccharomyces cerevisiae originated by horizontal gene transfer from Wickerhamomyces. League GP, Slot JC, Rokas A (2012) FEMS Yeast Res 12(7): 859-63
    › Primary publication · 22776361 (PubMed)
  72. Transcriptome-wide analysis of small RNA expression in early zebrafish development. Wei C, Salichos L, Wittgrove CM, Rokas A, Patton JG (2012) RNA 18(5): 915-29
    › Primary publication · 22408181 (PubMed) · PMC3334700 (PubMed Central)
  73. Global transcriptome changes underlying colony growth in the opportunistic human pathogen Aspergillus fumigatus. Gibbons JG, Beauvais A, Beau R, McGary KL, Latgé JP, Rokas A (2012) Eukaryot Cell 11(1): 68-78
    › Primary publication · 21724936 (PubMed) · PMC3255943 (PubMed Central)
  74. Transcriptome profiling of chemosensory appendages in the malaria vector Anopheles gambiae reveals tissue- and sex-specific signatures of odor coding. Pitts RJ, Rinker DC, Jones PL, Rokas A, Zwiebel LJ (2011) BMC Genomics : 271
    › Primary publication · 21619637 (PubMed) · PMC3126782 (PubMed Central)
  75. Evaluating ortholog prediction algorithms in a yeast model clade. Salichos L, Rokas A (2011) PLoS One 6(4): e18755
    › Primary publication · 21533202 (PubMed) · PMC3076445 (PubMed Central)
  76. Complete bacteriophage transfer in a bacterial endosymbiont (Wolbachia) determined by targeted genome capture. Kent BN, Salichos L, Gibbons JG, Rokas A, Newton IL, Clark ME, Bordenstein SR (2011) Genome Biol Evol : 209-18
    › Primary publication · 21292630 (PubMed) · PMC3068000 (PubMed Central)
  77. The molecular evolution of the p120-catenin subfamily and its functional associations. Carnahan RH, Rokas A, Gaucher EA, Reynolds AB (2010) PLoS One 5(12): e15747
    › Primary publication · 21209830 (PubMed) · PMC3013132 (PubMed Central)
  78. Horizontal transfer of a large and highly toxic secondary metabolic gene cluster between fungi. Slot JC, Rokas A (2011) Curr Biol 21(2): 134-9
    › Primary publication · 21194949 (PubMed)
  79. Multiple GAL pathway gene clusters evolved independently and by different mechanisms in fungi. Slot JC, Rokas A (2010) Proc Natl Acad Sci U S A 107(22): 10136-41
    › Primary publication · 20479238 (PubMed) · PMC2890473 (PubMed Central)
  80. The diversity and evolution of circadian clock proteins in fungi. Salichos L, Rokas A (2010) Mycologia 102(2): 269-78
    › Primary publication · 20361495 (PubMed)
  81. Benchmarking next-generation transcriptome sequencing for functional and evolutionary genomics. Gibbons JG, Janson EM, Hittinger CT, Johnston M, Abbot P, Rokas A (2009) Mol Biol Evol 26(12): 2731-44
    › Primary publication · 19706727 (PubMed)
  82. Harnessing genomics for evolutionary insights. Rokas A, Abbot P (2009) Trends Ecol Evol 24(4): 192-200
    › Primary publication · 19201503 (PubMed)
  83. The effect of domestication on the fungal proteome. Rokas A (2009) Trends Genet 25(2): 60-3
    › Primary publication · 19081651 (PubMed)
  84. Comparative and functional characterization of intragenic tandem repeats in 10 Aspergillus genomes. Gibbons JG, Rokas A (2009) Mol Biol Evol 26(3): 591-602
    › Primary publication · 19056904 (PubMed)
  85. Frequent and widespread parallel evolution of protein sequences. Rokas A, Carroll SB (2008) Mol Biol Evol 25(9): 1943-53
    › Primary publication · 18583353 (PubMed)
  86. What can comparative genomics tell us about species concepts in the genus Aspergillus? Rokas A, Payne G, Fedorova ND, Baker SE, Machida M, Yu J, Georgianna DR, Dean RA, Bhatnagar D, Cleveland TE, Wortman JR, Maiti R, Joardar V, Amedeo P, Denning DW, Nierman WC (2007) Stud Mycol : 11-7
    › Primary publication · 18490942 (PubMed) · PMC2275189 (PubMed Central)